Wall clock time and date at job start Mon Mar 30 2020 01:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46728 * 2 1 4 4 H 1.09002 * 109.47186 * 54.21861 * 3 2 1 5 5 C 1.50704 * 109.46614 * 174.21540 * 3 2 1 6 6 H 1.08005 * 119.99791 * 120.00685 * 5 3 2 7 7 C 1.37875 * 120.00390 * 299.99675 * 5 3 2 8 8 N 1.31508 * 120.00423 * 180.02562 * 7 5 3 9 9 Si 1.86805 * 119.99578 * 0.02562 * 7 5 3 10 10 H 1.48495 * 109.47562 * 89.99671 * 9 7 5 11 11 H 1.48508 * 109.46779 * 209.99755 * 9 7 5 12 12 H 1.48504 * 109.47187 * 329.99587 * 9 7 5 13 13 N 1.46899 * 109.47381 * 294.21524 * 3 2 1 14 14 C 1.46895 * 110.99961 * 150.98434 * 13 3 2 15 15 H 1.08997 * 109.52870 * 327.12738 * 14 13 3 16 16 C 1.53118 * 109.53068 * 87.27042 * 14 13 3 17 17 O 1.42907 * 109.39633 * 177.12324 * 16 14 13 18 18 C 1.42906 * 114.22358 * 298.77083 * 17 16 14 19 19 C 1.53116 * 109.39416 * 61.30229 * 18 17 16 20 20 C 1.53071 * 109.13026 * 302.68932 * 19 18 17 21 21 O 1.43613 * 109.52083 * 176.66928 * 20 19 18 22 22 C 1.44814 * 104.78638 * 95.76349 * 21 20 19 23 23 C 1.54926 * 101.73986 * 35.97127 * 22 21 20 24 24 O 1.43260 * 109.66921 * 296.17503 * 20 19 18 25 25 H 1.09001 * 109.47225 * 296.46303 * 1 2 3 26 26 H 1.08993 * 109.47355 * 56.47220 * 1 2 3 27 27 H 1.09007 * 109.46656 * 176.47160 * 1 2 3 28 28 H 1.09006 * 109.46727 * 240.00095 * 2 1 3 29 29 H 1.08997 * 109.47133 * 120.00020 * 2 1 3 30 30 H 0.97000 * 119.99976 * 180.02562 * 8 7 5 31 31 H 1.00904 * 110.99864 * 27.02595 * 13 3 2 32 32 H 1.09005 * 109.48151 * 297.17101 * 16 14 13 33 33 H 1.08997 * 109.48598 * 57.21635 * 16 14 13 34 34 H 1.09002 * 109.48256 * 301.32606 * 18 17 16 35 35 H 1.08997 * 109.49561 * 181.28732 * 18 17 16 36 36 H 1.09000 * 109.52931 * 182.79112 * 19 18 17 37 37 H 1.09006 * 109.58735 * 62.61651 * 19 18 17 38 38 H 1.09000 * 110.97678 * 277.85938 * 22 21 20 39 39 H 1.09004 * 110.97743 * 154.08012 * 22 21 20 40 40 H 1.09005 * 110.69286 * 206.11543 * 23 22 21 41 41 H 1.08993 * 110.70052 * 82.90594 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5945 1.9854 0.8337 5 6 3.5402 1.4449 0.1432 6 1 4.1554 1.8861 -0.6271 7 6 4.1273 0.8841 1.2576 8 7 5.4364 0.8866 1.3828 9 14 3.0630 0.1207 2.5896 10 1 2.8460 -1.3167 2.2867 11 1 3.7435 0.2526 3.9030 12 1 1.7536 0.8195 2.6381 13 7 1.6676 2.0936 -1.2631 14 6 1.4936 3.5404 -1.0783 15 1 1.1063 3.7360 -0.0783 16 6 2.8422 4.2445 -1.2517 17 8 2.6582 5.6571 -1.1378 18 6 1.7886 6.2165 -2.1242 19 6 0.3961 5.5952 -1.9856 20 6 0.5093 4.0748 -2.1218 21 8 -0.7802 3.4771 -1.9156 22 6 -1.3217 3.2982 -3.2467 23 6 -0.0519 2.9376 -4.0578 24 8 0.9716 3.7415 -3.4361 25 1 -0.3634 0.4579 0.9200 26 1 -0.3634 0.5676 -0.8566 27 1 -0.3633 -1.0258 -0.0633 28 1 1.8933 -0.5139 -0.8901 29 1 1.8934 -0.5138 0.8900 30 1 5.8494 0.4918 2.1666 31 1 0.8360 1.6762 -1.6536 32 1 3.5323 3.9032 -0.4800 33 1 3.2509 4.0102 -2.2346 34 1 2.1834 6.0061 -3.1182 35 1 1.7216 7.2949 -1.9805 36 1 -0.2557 5.9836 -2.7682 37 1 -0.0193 5.8436 -1.0089 38 1 -1.7695 4.2220 -3.6132 39 1 -2.0432 2.4814 -3.2679 40 1 -0.1735 3.2119 -5.1057 41 1 0.1791 1.8769 -3.9604 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255155238.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:18 Heat of formation + Delta-G solvation = -146.612027 kcal Electronic energy + Delta-G solvation = -23285.532841 eV Core-core repulsion = 19972.015535 eV Total energy + Delta-G solvation = -3313.517306 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.07647 -39.36878 -38.17167 -36.00594 -34.63365 -33.81517 -32.90154 -30.42432 -29.45773 -28.63521 -25.17554 -24.67019 -24.07781 -23.71931 -21.67645 -21.13546 -18.84606 -18.43801 -17.85620 -17.32255 -17.06572 -16.75815 -16.53625 -16.06626 -15.55475 -15.40484 -15.10758 -14.85025 -14.48657 -14.26230 -14.05204 -13.96611 -13.63514 -13.51258 -13.25777 -13.06916 -12.81994 -12.52908 -12.51373 -12.36932 -12.16739 -11.74615 -11.44922 -11.32380 -11.26318 -11.07724 -10.72920 -10.68790 -10.39432 -9.16020 -8.25090 -6.25717 1.26717 1.33419 1.42437 2.31741 2.41567 2.73806 2.89816 3.06071 3.40108 3.52202 3.75554 3.83613 4.02516 4.11426 4.16780 4.21532 4.26644 4.27360 4.34720 4.39551 4.49432 4.64666 4.67740 4.76896 4.78783 4.81844 4.86117 4.96341 5.00646 5.03959 5.05814 5.14521 5.21553 5.40848 5.70079 5.96903 6.12015 6.23953 6.47384 6.79628 6.86441 7.37727 8.91469 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.021101 B = 0.007467 C = 0.006144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.626735 B = 3749.117591 C = 4556.339758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.136 4.136 3 C 0.194 3.806 4 H -0.011 1.011 5 C -0.493 4.493 6 H 0.043 0.957 7 C 0.010 3.990 8 N -0.947 5.947 9 Si 0.942 3.058 10 H -0.264 1.264 11 H -0.300 1.300 12 H -0.255 1.255 13 N -0.658 5.658 14 C 0.068 3.932 15 H 0.037 0.963 16 C 0.089 3.911 17 O -0.403 6.403 18 C 0.058 3.942 19 C -0.164 4.164 20 C 0.260 3.740 21 O -0.389 6.389 22 C 0.013 3.987 23 C 0.012 3.988 24 O -0.379 6.379 25 H 0.043 0.957 26 H 0.063 0.937 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.041 0.959 30 H 0.264 0.736 31 H 0.338 0.662 32 H 0.079 0.921 33 H 0.050 0.950 34 H 0.058 0.942 35 H 0.123 0.877 36 H 0.109 0.891 37 H 0.085 0.915 38 H 0.096 0.904 39 H 0.131 0.869 40 H 0.127 0.873 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.487 6.235 -10.651 21.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.174 4.174 3 C 0.085 3.915 4 H 0.007 0.993 5 C -0.532 4.532 6 H 0.061 0.939 7 C -0.186 4.186 8 N -0.589 5.589 9 Si 0.770 3.230 10 H -0.190 1.190 11 H -0.228 1.228 12 H -0.179 1.179 13 N -0.293 5.293 14 C -0.044 4.044 15 H 0.055 0.945 16 C 0.012 3.988 17 O -0.322 6.322 18 C -0.018 4.018 19 C -0.202 4.202 20 C 0.182 3.818 21 O -0.310 6.310 22 C -0.063 4.063 23 C -0.064 4.064 24 O -0.300 6.300 25 H 0.063 0.937 26 H 0.082 0.918 27 H 0.092 0.908 28 H 0.085 0.915 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.159 0.841 32 H 0.097 0.903 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.141 0.859 36 H 0.127 0.873 37 H 0.103 0.897 38 H 0.114 0.886 39 H 0.149 0.851 40 H 0.145 0.855 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -16.525 6.368 -10.518 20.597 hybrid contribution -0.645 -0.725 1.150 1.505 sum -17.170 5.643 -9.368 20.357 Atomic orbital electron populations 1.21818 0.94554 1.02512 1.01494 1.22032 0.96182 0.98095 1.01093 1.19541 0.94152 0.91167 0.86681 0.99332 1.21277 0.91224 1.36132 1.04547 0.93884 1.25743 0.95840 0.96819 1.00244 1.70033 1.10952 1.47637 1.30230 0.85953 0.79438 0.79652 0.77953 1.18965 1.22801 1.17940 1.60252 1.39888 1.00853 1.28260 1.22291 0.95289 0.90456 0.96341 0.94471 1.22395 0.95810 0.78967 1.01626 1.87902 1.67533 1.21649 1.55077 1.22756 0.87830 0.99219 0.91993 1.22777 0.99904 0.92696 1.04844 1.23336 0.81580 0.93090 0.83768 1.89247 1.30275 1.82472 1.28989 1.24699 0.97026 1.04325 0.80206 1.24476 0.85696 0.96560 0.99661 1.88921 1.43592 1.71085 1.26438 0.93744 0.91847 0.90772 0.91536 0.94049 0.92728 0.84138 0.90278 0.93140 0.92361 0.85896 0.87281 0.89668 0.88585 0.85090 0.85493 0.90959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.72 9.81 71.98 0.71 -4.02 16 2 C -0.14 -5.71 4.98 30.60 0.15 -5.56 16 3 C 0.19 9.26 1.62 44.17 0.07 9.34 16 4 H -0.01 -0.54 6.39 -2.39 -0.02 -0.56 16 5 C -0.49 -28.63 8.03 25.60 0.21 -28.43 16 6 H 0.04 2.80 7.29 -2.91 -0.02 2.78 16 7 C 0.01 0.61 5.45 84.66 0.46 1.07 16 8 N -0.95 -60.44 13.96 21.45 0.30 -60.14 16 9 Si 0.94 46.16 24.41 68.60 1.67 47.84 16 10 H -0.26 -12.16 6.82 99.48 0.68 -11.48 16 11 H -0.30 -14.73 7.11 99.48 0.71 -14.02 16 12 H -0.26 -11.83 6.53 99.48 0.65 -11.18 16 13 N -0.66 -27.57 5.96 -472.99 -2.82 -30.39 16 14 C 0.07 2.67 2.20 44.98 0.10 2.77 16 15 H 0.04 1.62 7.35 -2.39 -0.02 1.60 16 16 C 0.09 3.82 5.83 72.02 0.42 4.24 16 17 O -0.40 -15.20 10.76 -148.98 -1.60 -16.80 16 18 C 0.06 1.57 6.71 72.02 0.48 2.06 16 19 C -0.16 -4.09 5.49 30.66 0.17 -3.92 16 20 C 0.26 7.83 0.58 30.64 0.02 7.84 16 21 O -0.39 -10.55 10.31 -126.22 -1.30 -11.85 16 22 C 0.01 0.22 7.92 72.64 0.58 0.79 16 23 C 0.01 0.23 7.88 72.64 0.57 0.80 16 24 O -0.38 -11.00 9.72 -126.22 -1.23 -12.22 16 25 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.06 1.87 6.40 -2.39 -0.02 1.85 16 27 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 28 H 0.07 2.77 8.14 -2.38 -0.02 2.75 16 29 H 0.04 1.85 3.21 -2.39 -0.01 1.84 16 30 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 31 H 0.34 12.47 5.31 -89.69 -0.48 11.99 16 32 H 0.08 4.04 6.39 -2.38 -0.02 4.03 16 33 H 0.05 2.20 7.86 -2.39 -0.02 2.19 16 34 H 0.06 1.56 7.85 -2.39 -0.02 1.54 16 35 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 36 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16 38 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.13 1.54 8.14 -2.38 -0.02 1.52 16 40 H 0.13 1.67 8.14 -2.38 -0.02 1.65 16 41 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -71.75 309.86 -0.58 -72.34 By element: Atomic # 1 Polarization: 23.77 SS G_CDS: 0.46 Total: 24.24 kcal Atomic # 6 Polarization: -16.93 SS G_CDS: 3.93 Total: -13.00 kcal Atomic # 7 Polarization: -88.01 SS G_CDS: -2.52 Total: -90.53 kcal Atomic # 8 Polarization: -36.74 SS G_CDS: -4.13 Total: -40.87 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 1.67 Total: 47.84 kcal Total: -71.75 -0.58 -72.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255155238.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.276 kcal (2) G-P(sol) polarization free energy of solvation -71.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds