Wall clock time and date at job start Mon Mar 30 2020 01:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46671 * 2 1 4 4 H 1.09005 * 109.47396 * 54.32763 * 3 2 1 5 5 C 1.50701 * 109.46773 * 174.32227 * 3 2 1 6 6 H 1.08005 * 119.99852 * 119.99752 * 5 3 2 7 7 C 1.37873 * 120.00395 * 300.00026 * 5 3 2 8 8 N 1.31512 * 120.00489 * 179.97438 * 7 5 3 9 9 Si 1.86807 * 119.99824 * 0.02562 * 7 5 3 10 10 H 1.48497 * 109.47053 * 89.99608 * 9 7 5 11 11 H 1.48500 * 109.47048 * 210.00191 * 9 7 5 12 12 H 1.48502 * 109.46889 * 329.99667 * 9 7 5 13 13 N 1.46898 * 109.47440 * 294.32174 * 3 2 1 14 14 C 1.46899 * 111.00267 * 155.57381 * 13 3 2 15 15 H 1.09001 * 109.52637 * 33.60246 * 14 13 3 16 16 C 1.53128 * 109.52738 * 273.46758 * 14 13 3 17 17 O 1.42906 * 109.39691 * 182.87737 * 16 14 13 18 18 C 1.42909 * 114.21960 * 61.22909 * 17 16 14 19 19 C 1.53125 * 109.39251 * 298.69091 * 18 17 16 20 20 C 1.53059 * 109.53015 * 153.73738 * 14 13 3 21 21 O 1.43644 * 109.47516 * 56.42943 * 20 14 13 22 22 C 1.44811 * 104.77551 * 215.75100 * 21 20 14 23 23 C 1.54923 * 101.73444 * 35.99924 * 22 21 20 24 24 O 1.43230 * 109.73855 * 296.92083 * 20 14 13 25 25 H 1.09000 * 109.46983 * 185.66439 * 1 2 3 26 26 H 1.09002 * 109.47109 * 305.66087 * 1 2 3 27 27 H 1.08998 * 109.47335 * 65.66067 * 1 2 3 28 28 H 1.08991 * 109.46935 * 240.00506 * 2 1 3 29 29 H 1.09003 * 109.46998 * 119.99743 * 2 1 3 30 30 H 0.96996 * 120.00393 * 179.97438 * 8 7 5 31 31 H 1.00902 * 111.00140 * 31.61926 * 13 3 2 32 32 H 1.08999 * 109.47842 * 302.77956 * 16 14 13 33 33 H 1.08994 * 109.48327 * 62.82042 * 16 14 13 34 34 H 1.08997 * 109.48704 * 178.71003 * 18 17 16 35 35 H 1.09004 * 109.49331 * 58.67008 * 18 17 16 36 36 H 1.09005 * 109.52491 * 297.41137 * 19 18 17 37 37 H 1.08997 * 109.58592 * 177.24305 * 19 18 17 38 38 H 1.08998 * 110.97586 * 277.88611 * 22 21 20 39 39 H 1.08993 * 110.97633 * 154.11149 * 22 21 20 40 40 H 1.09003 * 110.69030 * 206.11731 * 23 22 21 41 41 H 1.08995 * 110.84453 * 82.98067 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5960 1.9849 0.8349 5 6 3.5404 1.4449 0.1406 6 1 4.1543 1.8864 -0.6306 7 6 4.1295 0.8834 1.2535 8 7 5.4389 0.8850 1.3759 9 14 3.0677 0.1190 2.5869 10 1 2.8503 -1.3183 2.2833 11 1 3.7504 0.2501 3.8992 12 1 1.7583 0.8177 2.6382 13 7 1.6654 2.0944 -1.2620 14 6 1.5978 3.5530 -1.1014 15 1 2.3488 3.8752 -0.3801 16 6 0.2054 3.9491 -0.6023 17 8 0.1212 5.3727 -0.5110 18 6 0.3050 6.0518 -1.7550 19 6 1.7022 5.7441 -2.3006 20 6 1.8602 4.2288 -2.4494 21 8 0.9196 3.7426 -3.4201 22 6 1.6651 3.6849 -4.6602 23 6 3.0675 3.2512 -4.1648 24 8 3.1869 3.9227 -2.8939 25 1 -0.3633 -1.0227 0.1014 26 1 -0.3633 0.5991 0.8350 27 1 -0.3634 0.4235 -0.9363 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 5.8533 0.4903 2.1591 31 1 0.7930 1.7285 -1.6130 32 1 -0.5481 3.5853 -1.3008 33 1 0.0329 3.5098 0.3802 34 1 0.2031 7.1261 -1.6013 35 1 -0.4466 5.7137 -2.4685 36 1 2.4549 6.1227 -1.6091 37 1 1.8280 6.2207 -3.2727 38 1 1.7054 4.6641 -5.1372 39 1 1.2425 2.9409 -5.3353 40 1 3.8412 3.5903 -4.8538 41 1 3.1158 2.1701 -4.0353 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255155240.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:21 Heat of formation + Delta-G solvation = -121.631534 kcal Electronic energy + Delta-G solvation = -23247.662739 eV Core-core repulsion = 19935.228669 eV Total energy + Delta-G solvation = -3312.434070 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.67247 -38.15137 -36.48196 -34.59858 -32.91117 -31.98427 -31.59087 -29.14233 -28.07297 -26.49784 -23.99912 -23.29012 -22.73808 -22.15448 -19.97082 -19.70843 -17.01408 -16.84406 -16.59982 -15.94851 -15.62127 -15.42330 -15.16772 -14.36450 -14.11087 -13.86853 -13.72462 -13.37163 -13.10207 -12.76804 -12.43876 -12.39051 -12.16327 -12.00703 -11.81991 -11.60667 -11.37416 -11.12456 -10.91409 -10.54217 -10.51696 -10.25854 -10.12174 -9.86380 -9.58268 -9.47695 -9.12301 -9.03735 -8.47585 -7.33257 -5.98193 -3.94682 3.28203 3.38874 3.41074 3.67788 3.96183 4.22396 4.44776 4.79177 4.80036 4.92833 5.07313 5.13228 5.25973 5.30535 5.36315 5.42530 5.49015 5.61725 5.68995 5.72684 5.77110 5.81363 5.83343 5.95919 6.03943 6.09829 6.17710 6.25335 6.45701 6.48159 6.61738 6.71009 6.80179 7.14915 7.31783 7.47933 7.74726 7.96126 8.26419 8.80419 9.18609 9.64757 11.15248 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.020191 B = 0.007106 C = 0.006653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.454505 B = 3939.285783 C = 4207.587243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.135 4.135 3 C 0.189 3.811 4 H 0.001 0.999 5 C -0.492 4.492 6 H 0.085 0.915 7 C 0.066 3.934 8 N -0.901 5.901 9 Si 0.880 3.120 10 H -0.280 1.280 11 H -0.298 1.298 12 H -0.268 1.268 13 N -0.652 5.652 14 C 0.064 3.936 15 H 0.110 0.890 16 C 0.038 3.962 17 O -0.383 6.383 18 C 0.069 3.931 19 C -0.176 4.176 20 C 0.273 3.727 21 O -0.369 6.369 22 C 0.017 3.983 23 C 0.029 3.971 24 O -0.353 6.353 25 H 0.045 0.955 26 H 0.045 0.955 27 H 0.050 0.950 28 H 0.068 0.932 29 H 0.054 0.946 30 H 0.262 0.738 31 H 0.322 0.678 32 H 0.053 0.947 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.054 0.946 36 H 0.089 0.911 37 H 0.076 0.924 38 H 0.065 0.935 39 H 0.102 0.898 40 H 0.087 0.913 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.766 6.652 -10.287 16.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.172 4.172 3 C 0.081 3.919 4 H 0.018 0.982 5 C -0.530 4.530 6 H 0.103 0.897 7 C -0.135 4.135 8 N -0.540 5.540 9 Si 0.710 3.290 10 H -0.207 1.207 11 H -0.226 1.226 12 H -0.193 1.193 13 N -0.283 5.283 14 C -0.048 4.048 15 H 0.127 0.873 16 C -0.041 4.041 17 O -0.300 6.300 18 C -0.008 4.008 19 C -0.214 4.214 20 C 0.195 3.805 21 O -0.290 6.290 22 C -0.059 4.059 23 C -0.047 4.047 24 O -0.273 6.273 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.087 0.913 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.141 0.859 32 H 0.071 0.929 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.072 0.928 36 H 0.108 0.892 37 H 0.094 0.906 38 H 0.083 0.917 39 H 0.120 0.880 40 H 0.105 0.895 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -10.035 6.694 -10.074 15.716 hybrid contribution -1.115 -0.621 0.852 1.535 sum -11.150 6.073 -9.222 15.692 Atomic orbital electron populations 1.21929 0.98222 1.00628 1.00733 1.22110 0.92896 1.00406 1.01835 1.19691 0.97141 0.89225 0.85864 0.98191 1.21059 0.89007 1.37114 1.05856 0.89719 1.24958 0.94718 0.96103 0.97697 1.69886 1.08900 1.45992 1.29190 0.86987 0.80833 0.79715 0.81418 1.20717 1.22550 1.19330 1.60415 1.35754 1.00667 1.31502 1.22422 0.97002 0.90942 0.94426 0.87252 1.23493 0.97307 0.81024 1.02238 1.87888 1.92620 1.18792 1.30711 1.22465 0.94774 0.97224 0.86308 1.22860 0.99736 0.95970 1.02883 1.23237 0.76378 0.91196 0.89684 1.89171 1.34755 1.86973 1.18085 1.24292 0.91934 1.01362 0.88343 1.24066 0.96284 0.99437 0.84944 1.88946 1.25069 1.77304 1.36022 0.93589 0.93565 0.93131 0.91339 0.92763 0.92833 0.85899 0.92879 0.88780 0.88864 0.92758 0.89226 0.90566 0.91687 0.87997 0.89452 0.89894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.68 9.64 37.16 0.36 -2.32 16 2 C -0.13 -2.86 5.02 -26.73 -0.13 -2.99 16 3 C 0.19 4.39 1.44 -68.87 -0.10 4.29 16 4 H 0.00 0.01 6.32 -51.93 -0.33 -0.31 16 5 C -0.49 -13.90 9.05 -34.44 -0.31 -14.21 16 6 H 0.08 2.69 8.06 -52.48 -0.42 2.27 16 7 C 0.07 1.92 5.45 -17.82 -0.10 1.83 16 8 N -0.90 -27.93 13.96 55.43 0.77 -27.16 16 9 Si 0.88 22.06 24.41 -169.99 -4.15 17.91 16 10 H -0.28 -6.84 6.82 56.52 0.39 -6.45 16 11 H -0.30 -7.54 7.11 56.52 0.40 -7.14 16 12 H -0.27 -6.43 6.53 56.52 0.37 -6.06 16 13 N -0.65 -13.19 5.78 -100.85 -0.58 -13.78 16 14 C 0.06 1.22 1.95 -67.62 -0.13 1.09 16 15 H 0.11 2.46 7.61 -51.93 -0.39 2.07 16 16 C 0.04 0.64 5.96 37.22 0.22 0.86 16 17 O -0.38 -6.27 10.76 -35.23 -0.38 -6.65 16 18 C 0.07 0.92 6.70 37.22 0.25 1.17 16 19 C -0.18 -2.51 5.49 -26.63 -0.15 -2.65 16 20 C 0.27 4.59 0.74 -26.67 -0.02 4.57 16 21 O -0.37 -5.60 9.79 -59.04 -0.58 -6.18 16 22 C 0.02 0.21 7.92 38.17 0.30 0.51 16 23 C 0.03 0.42 8.08 38.17 0.31 0.73 16 24 O -0.35 -6.60 10.80 -59.04 -0.64 -7.24 16 25 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.05 0.77 6.65 -51.93 -0.35 0.42 16 28 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 29 H 0.05 1.25 3.21 -51.93 -0.17 1.08 16 30 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 31 H 0.32 5.91 6.28 -39.29 -0.25 5.67 16 32 H 0.05 0.83 7.78 -51.93 -0.40 0.43 16 33 H 0.09 1.61 7.57 -51.93 -0.39 1.22 16 34 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.05 0.69 7.83 -51.93 -0.41 0.28 16 36 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 37 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 314.43 15.07 4.74 4.74 Total: -1.00 -31.93 314.43 -6.84 -38.77 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -6.52 Total: 6.72 kcal Atomic # 6 Polarization: -7.63 SS G_CDS: 0.50 Total: -7.13 kcal Atomic # 7 Polarization: -41.13 SS G_CDS: 0.19 Total: -40.94 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: -1.59 Total: -20.07 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.15 Total: 17.91 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.93 -6.84 -38.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255155240.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.866 kcal (2) G-P(sol) polarization free energy of solvation -31.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds