Wall clock time and date at job start Mon Mar 30 2020 01:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46671 * 2 1 4 4 H 1.09005 * 109.47396 * 54.32763 * 3 2 1 5 5 C 1.50701 * 109.46773 * 174.32227 * 3 2 1 6 6 H 1.08005 * 119.99852 * 119.99752 * 5 3 2 7 7 C 1.37873 * 120.00395 * 300.00026 * 5 3 2 8 8 N 1.31512 * 120.00489 * 179.97438 * 7 5 3 9 9 Si 1.86807 * 119.99824 * 0.02562 * 7 5 3 10 10 H 1.48497 * 109.47053 * 89.99608 * 9 7 5 11 11 H 1.48500 * 109.47048 * 210.00191 * 9 7 5 12 12 H 1.48502 * 109.46889 * 329.99667 * 9 7 5 13 13 N 1.46898 * 109.47440 * 294.32174 * 3 2 1 14 14 C 1.46899 * 111.00267 * 155.57381 * 13 3 2 15 15 H 1.09001 * 109.52637 * 33.60246 * 14 13 3 16 16 C 1.53128 * 109.52738 * 273.46758 * 14 13 3 17 17 O 1.42906 * 109.39691 * 182.87737 * 16 14 13 18 18 C 1.42909 * 114.21960 * 61.22909 * 17 16 14 19 19 C 1.53125 * 109.39251 * 298.69091 * 18 17 16 20 20 C 1.53059 * 109.53015 * 153.73738 * 14 13 3 21 21 O 1.43644 * 109.47516 * 56.42943 * 20 14 13 22 22 C 1.44811 * 104.77551 * 215.75100 * 21 20 14 23 23 C 1.54923 * 101.73444 * 35.99924 * 22 21 20 24 24 O 1.43230 * 109.73855 * 296.92083 * 20 14 13 25 25 H 1.09000 * 109.46983 * 185.66439 * 1 2 3 26 26 H 1.09002 * 109.47109 * 305.66087 * 1 2 3 27 27 H 1.08998 * 109.47335 * 65.66067 * 1 2 3 28 28 H 1.08991 * 109.46935 * 240.00506 * 2 1 3 29 29 H 1.09003 * 109.46998 * 119.99743 * 2 1 3 30 30 H 0.96996 * 120.00393 * 179.97438 * 8 7 5 31 31 H 1.00902 * 111.00140 * 31.61926 * 13 3 2 32 32 H 1.08999 * 109.47842 * 302.77956 * 16 14 13 33 33 H 1.08994 * 109.48327 * 62.82042 * 16 14 13 34 34 H 1.08997 * 109.48704 * 178.71003 * 18 17 16 35 35 H 1.09004 * 109.49331 * 58.67008 * 18 17 16 36 36 H 1.09005 * 109.52491 * 297.41137 * 19 18 17 37 37 H 1.08997 * 109.58592 * 177.24305 * 19 18 17 38 38 H 1.08998 * 110.97586 * 277.88611 * 22 21 20 39 39 H 1.08993 * 110.97633 * 154.11149 * 22 21 20 40 40 H 1.09003 * 110.69030 * 206.11731 * 23 22 21 41 41 H 1.08995 * 110.84453 * 82.98067 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5960 1.9849 0.8349 5 6 3.5404 1.4449 0.1406 6 1 4.1543 1.8864 -0.6306 7 6 4.1295 0.8834 1.2535 8 7 5.4389 0.8850 1.3759 9 14 3.0677 0.1190 2.5869 10 1 2.8503 -1.3183 2.2833 11 1 3.7504 0.2501 3.8992 12 1 1.7583 0.8177 2.6382 13 7 1.6654 2.0944 -1.2620 14 6 1.5978 3.5530 -1.1014 15 1 2.3488 3.8752 -0.3801 16 6 0.2054 3.9491 -0.6023 17 8 0.1212 5.3727 -0.5110 18 6 0.3050 6.0518 -1.7550 19 6 1.7022 5.7441 -2.3006 20 6 1.8602 4.2288 -2.4494 21 8 0.9196 3.7426 -3.4201 22 6 1.6651 3.6849 -4.6602 23 6 3.0675 3.2512 -4.1648 24 8 3.1869 3.9227 -2.8939 25 1 -0.3633 -1.0227 0.1014 26 1 -0.3633 0.5991 0.8350 27 1 -0.3634 0.4235 -0.9363 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 5.8533 0.4903 2.1591 31 1 0.7930 1.7285 -1.6130 32 1 -0.5481 3.5853 -1.3008 33 1 0.0329 3.5098 0.3802 34 1 0.2031 7.1261 -1.6013 35 1 -0.4466 5.7137 -2.4685 36 1 2.4549 6.1227 -1.6091 37 1 1.8280 6.2207 -3.2727 38 1 1.7054 4.6641 -5.1372 39 1 1.2425 2.9409 -5.3353 40 1 3.8412 3.5903 -4.8538 41 1 3.1158 2.1701 -4.0353 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255155240.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:20 Heat of formation + Delta-G solvation = -147.403953 kcal Electronic energy + Delta-G solvation = -23248.780315 eV Core-core repulsion = 19935.228669 eV Total energy + Delta-G solvation = -3313.551646 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.91999 -39.42470 -38.14068 -35.84840 -34.66918 -33.78489 -32.89587 -30.43264 -29.52270 -28.26755 -25.20900 -24.79888 -24.05587 -23.56046 -21.73471 -21.09597 -18.83897 -18.21264 -17.96565 -17.25159 -17.08585 -16.81885 -16.50279 -15.99046 -15.64819 -15.36634 -15.03749 -14.75370 -14.53427 -14.24374 -13.92559 -13.80849 -13.66311 -13.43326 -13.29152 -12.89733 -12.74265 -12.52358 -12.46466 -12.30925 -12.10194 -11.88000 -11.66306 -11.27914 -11.23730 -10.99279 -10.79238 -10.70101 -10.39532 -8.98276 -8.25367 -6.26507 1.27159 1.33310 1.42993 2.31694 2.53737 2.75366 2.98145 3.07833 3.40512 3.63394 3.83075 3.85649 4.03406 4.12887 4.15495 4.24184 4.27357 4.34016 4.35287 4.41646 4.47459 4.58908 4.67204 4.69846 4.80362 4.85548 4.88951 4.97665 5.05495 5.08079 5.11528 5.12088 5.21966 5.43389 5.71618 5.99108 6.16445 6.27528 6.46771 6.81595 6.93822 7.37149 8.92364 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.020191 B = 0.007106 C = 0.006653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.454505 B = 3939.285783 C = 4207.587243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.134 4.134 3 C 0.197 3.803 4 H -0.007 1.007 5 C -0.492 4.492 6 H 0.029 0.971 7 C 0.005 3.995 8 N -0.953 5.953 9 Si 0.948 3.052 10 H -0.264 1.264 11 H -0.301 1.301 12 H -0.248 1.248 13 N -0.655 5.655 14 C 0.061 3.939 15 H 0.059 0.941 16 C 0.050 3.950 17 O -0.398 6.398 18 C 0.067 3.933 19 C -0.171 4.171 20 C 0.273 3.727 21 O -0.375 6.375 22 C 0.023 3.977 23 C 0.019 3.981 24 O -0.394 6.394 25 H 0.070 0.930 26 H 0.049 0.951 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.039 0.961 30 H 0.263 0.737 31 H 0.337 0.663 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.123 0.877 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.103 0.897 38 H 0.093 0.907 39 H 0.129 0.871 40 H 0.112 0.888 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.138 6.851 -11.375 19.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.172 4.172 3 C 0.088 3.912 4 H 0.011 0.989 5 C -0.531 4.531 6 H 0.048 0.952 7 C -0.191 4.191 8 N -0.594 5.594 9 Si 0.775 3.225 10 H -0.190 1.190 11 H -0.229 1.229 12 H -0.172 1.172 13 N -0.288 5.288 14 C -0.051 4.051 15 H 0.078 0.922 16 C -0.029 4.029 17 O -0.315 6.315 18 C -0.009 4.009 19 C -0.210 4.210 20 C 0.195 3.805 21 O -0.295 6.295 22 C -0.052 4.052 23 C -0.057 4.057 24 O -0.315 6.315 25 H 0.089 0.911 26 H 0.068 0.932 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.157 0.843 32 H 0.090 0.910 33 H 0.105 0.895 34 H 0.141 0.859 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.122 0.878 38 H 0.112 0.888 39 H 0.147 0.853 40 H 0.130 0.870 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.442 6.902 -11.198 18.807 hybrid contribution 0.048 -0.607 1.038 1.203 sum -13.395 6.295 -10.160 17.952 Atomic orbital electron populations 1.21853 0.94225 1.02573 1.02003 1.21983 0.96423 0.97898 1.00853 1.19434 0.93603 0.91158 0.87016 0.98911 1.21271 0.91691 1.35833 1.04320 0.95227 1.25832 0.95949 0.96889 1.00438 1.70062 1.11168 1.47891 1.30318 0.85871 0.79522 0.79600 0.77505 1.18990 1.22930 1.17177 1.60240 1.36846 1.01607 1.30077 1.22374 0.97237 0.90161 0.95364 0.92221 1.23283 0.95805 0.81695 1.02133 1.87871 1.92548 1.18356 1.32767 1.22732 0.94167 0.98599 0.85403 1.22840 1.00102 0.94034 1.04029 1.23167 0.76090 0.92437 0.88810 1.89127 1.34379 1.87088 1.18928 1.24523 0.89625 1.03712 0.87376 1.24267 0.99255 0.98057 0.84139 1.88929 1.26656 1.77766 1.38134 0.91135 0.93166 0.91231 0.91893 0.94240 0.92816 0.84260 0.90952 0.89524 0.85943 0.91225 0.91020 0.87835 0.88850 0.85273 0.87035 0.92231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.54 9.64 71.98 0.69 -3.84 16 2 C -0.13 -5.50 5.02 30.60 0.15 -5.34 16 3 C 0.20 9.26 1.44 44.17 0.06 9.32 16 4 H -0.01 -0.32 6.32 -2.38 -0.02 -0.33 16 5 C -0.49 -29.31 9.05 25.60 0.23 -29.08 16 6 H 0.03 2.03 8.06 -2.91 -0.02 2.01 16 7 C 0.00 0.30 5.45 84.65 0.46 0.76 16 8 N -0.95 -62.04 13.96 21.45 0.30 -61.74 16 9 Si 0.95 46.22 24.41 68.60 1.67 47.90 16 10 H -0.26 -12.12 6.82 99.48 0.68 -11.44 16 11 H -0.30 -14.76 7.11 99.48 0.71 -14.05 16 12 H -0.25 -11.16 6.53 99.48 0.65 -10.51 16 13 N -0.65 -26.75 5.78 -472.99 -2.74 -29.49 16 14 C 0.06 2.35 1.95 44.98 0.09 2.44 16 15 H 0.06 2.88 7.61 -2.39 -0.02 2.86 16 16 C 0.05 1.60 5.96 72.02 0.43 2.03 16 17 O -0.40 -12.40 10.76 -148.98 -1.60 -14.00 16 18 C 0.07 1.60 6.70 72.02 0.48 2.08 16 19 C -0.17 -4.65 5.49 30.66 0.17 -4.48 16 20 C 0.27 9.05 0.74 30.64 0.02 9.07 16 21 O -0.37 -10.44 9.79 -126.22 -1.24 -11.68 16 22 C 0.02 0.49 7.92 72.64 0.58 1.07 16 23 C 0.02 0.53 8.08 72.64 0.59 1.12 16 24 O -0.39 -15.13 10.80 -126.22 -1.36 -16.50 16 25 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.07 1.84 6.65 -2.39 -0.02 1.83 16 28 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 29 H 0.04 1.74 3.21 -2.39 -0.01 1.73 16 30 H 0.26 16.04 8.31 -92.71 -0.77 15.27 16 31 H 0.34 11.89 6.28 -89.69 -0.56 11.33 16 32 H 0.07 2.07 7.78 -2.39 -0.02 2.05 16 33 H 0.09 2.89 7.57 -2.39 -0.02 2.87 16 34 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.07 1.48 7.83 -2.39 -0.02 1.46 16 36 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 37 H 0.10 2.21 8.14 -2.39 -0.02 2.20 16 38 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.13 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 41 H 0.06 1.92 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -74.33 314.43 -0.63 -74.96 By element: Atomic # 1 Polarization: 25.02 SS G_CDS: 0.37 Total: 25.39 kcal Atomic # 6 Polarization: -18.81 SS G_CDS: 3.96 Total: -14.85 kcal Atomic # 7 Polarization: -88.79 SS G_CDS: -2.44 Total: -91.23 kcal Atomic # 8 Polarization: -37.97 SS G_CDS: -4.20 Total: -42.17 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 1.67 Total: 47.90 kcal Total: -74.33 -0.63 -74.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255155240.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.441 kcal (2) G-P(sol) polarization free energy of solvation -74.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds