Wall clock time and date at job start Mon Mar 30 2020 01:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47015 * 2 1 4 4 H 1.08997 * 109.47322 * 177.87696 * 3 2 1 5 5 C 1.50701 * 109.47104 * 297.87741 * 3 2 1 6 6 H 1.08002 * 120.00265 * 116.02284 * 5 3 2 7 7 C 1.37884 * 119.99976 * 296.02065 * 5 3 2 8 8 N 1.31515 * 119.99756 * 350.05470 * 7 5 3 9 9 Si 1.86800 * 119.99981 * 170.04879 * 7 5 3 10 10 H 1.48504 * 109.47234 * 270.00075 * 9 7 5 11 11 H 1.48494 * 109.47009 * 30.00187 * 9 7 5 12 12 H 1.48501 * 109.46844 * 150.00621 * 9 7 5 13 13 N 1.46897 * 109.47323 * 57.87597 * 3 2 1 14 14 C 1.46897 * 111.00074 * 116.67161 * 13 3 2 15 15 C 1.50702 * 109.54048 * 65.17328 * 14 13 3 16 16 O 1.20829 * 119.99796 * 146.01970 * 15 14 13 17 17 O 1.34229 * 119.99936 * 326.01548 * 15 14 13 18 18 C 1.45202 * 116.99810 * 180.02562 * 17 15 14 19 19 C 1.53178 * 109.54544 * 304.99713 * 14 13 3 20 20 C 1.53280 * 109.05911 * 297.02898 * 19 14 13 21 21 O 1.42903 * 109.46177 * 302.44197 * 20 19 14 22 22 C 1.42905 * 114.09762 * 61.16428 * 21 20 19 23 23 C 1.53097 * 109.41343 * 298.84053 * 22 21 20 24 24 H 1.08999 * 109.46800 * 305.36390 * 1 2 3 25 25 H 1.08991 * 109.47411 * 65.37099 * 1 2 3 26 26 H 1.09007 * 109.47114 * 185.36680 * 1 2 3 27 27 H 1.08998 * 109.47121 * 240.00141 * 2 1 3 28 28 H 1.09000 * 109.47236 * 120.00143 * 2 1 3 29 29 H 0.97000 * 119.99974 * 4.28695 * 8 7 5 30 30 H 1.00908 * 111.00019 * 240.62882 * 13 3 2 31 31 H 1.09008 * 109.47313 * 300.00272 * 18 17 15 32 32 H 1.09002 * 109.47189 * 59.99905 * 18 17 15 33 33 H 1.08995 * 109.47381 * 179.97438 * 18 17 15 34 34 H 1.09001 * 109.52110 * 57.01291 * 19 14 13 35 35 H 1.08997 * 109.52066 * 177.20951 * 19 14 13 36 36 H 1.08997 * 109.45607 * 182.44909 * 20 19 14 37 37 H 1.08997 * 109.46951 * 62.44897 * 20 19 14 38 38 H 1.08997 * 109.48622 * 178.86029 * 22 21 20 39 39 H 1.09000 * 109.49058 * 58.82373 * 22 21 20 40 40 H 1.09003 * 109.51846 * 297.70567 * 23 22 21 41 41 H 1.08998 * 109.57721 * 177.54185 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1293 1.4428 0.0381 5 6 1.5810 2.1375 -1.2559 6 1 0.9054 2.9777 -1.1921 7 6 2.0238 1.7009 -2.4866 8 7 2.9909 0.8126 -2.5602 9 14 1.2499 2.3709 -4.0492 10 1 0.0991 1.5164 -4.4374 11 1 0.7783 3.7588 -3.8122 12 1 2.2574 2.3698 -5.1402 13 7 1.5089 2.1496 1.1729 14 6 2.5934 2.5680 2.0711 15 6 3.4579 3.5883 1.3764 16 8 3.9692 4.4799 2.0117 17 8 3.6600 3.5065 0.0519 18 6 4.5043 4.5230 -0.5500 19 6 3.4421 1.3508 2.4513 20 6 2.5710 0.3554 3.2258 21 8 2.0239 0.9982 4.3789 22 6 1.1841 2.1153 4.0808 23 6 1.9980 3.1811 3.3424 24 1 -0.3633 0.5948 0.8381 25 1 -0.3634 0.4282 -0.9341 26 1 -0.3634 -1.0232 0.0961 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 3.3501 0.4184 -1.7500 30 1 0.9450 2.9389 0.8946 31 1 4.0658 5.5066 -0.3807 32 1 5.4961 4.4851 -0.0995 33 1 4.5852 4.3404 -1.6215 34 1 3.8247 0.8769 1.5473 35 1 4.2755 1.6692 3.0775 36 1 3.1794 -0.4936 3.5373 37 1 1.7610 0.0066 2.5853 38 1 0.7933 2.5341 5.0081 39 1 0.3558 1.7898 3.4514 40 1 2.8024 3.5363 3.9866 41 1 1.3498 4.0157 3.0751 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255155772.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:01 Heat of formation + Delta-G solvation = -129.392113 kcal Electronic energy + Delta-G solvation = -23646.928879 eV Core-core repulsion = 20334.158285 eV Total energy + Delta-G solvation = -3312.770594 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.62579 -38.70395 -36.38801 -35.90149 -33.74897 -31.38911 -30.80934 -29.66474 -27.42709 -25.70486 -24.51762 -23.85759 -23.07072 -21.25559 -19.87870 -18.63944 -17.33518 -17.01653 -16.59499 -15.87005 -15.53658 -15.38002 -14.65142 -14.26645 -14.13553 -13.74543 -13.16846 -12.92514 -12.81725 -12.57838 -12.54608 -12.29486 -12.06035 -11.66823 -11.32018 -11.18162 -11.06319 -10.81717 -10.65339 -10.47625 -10.21520 -10.16792 -10.14114 -9.96802 -9.70855 -9.68997 -9.30659 -8.69820 -8.17514 -7.60919 -6.32056 -4.00734 2.64188 3.25937 3.41114 3.41759 3.57218 4.15502 4.49624 4.81296 4.88979 5.02822 5.20907 5.25936 5.40532 5.56745 5.56978 5.62771 5.73983 5.76582 5.85800 5.90274 6.02025 6.05882 6.16958 6.22557 6.29464 6.36392 6.46749 6.56076 6.91441 6.96247 7.00790 7.18323 7.41700 7.46310 7.53843 7.77509 7.85955 8.23699 8.40573 8.54019 8.87589 9.65987 11.04466 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.019184 B = 0.008690 C = 0.006838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.185548 B = 3221.446001 C = 4093.840789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.111 4.111 3 C 0.201 3.799 4 H 0.031 0.969 5 C -0.584 4.584 6 H 0.046 0.954 7 C 0.028 3.972 8 N -0.910 5.910 9 Si 1.060 2.940 10 H -0.289 1.289 11 H -0.292 1.292 12 H -0.288 1.288 13 N -0.659 5.659 14 C 0.131 3.869 15 C 0.429 3.571 16 O -0.534 6.534 17 O -0.300 6.300 18 C 0.035 3.965 19 C -0.141 4.141 20 C 0.069 3.931 21 O -0.389 6.389 22 C 0.073 3.927 23 C -0.130 4.130 24 H 0.049 0.951 25 H 0.054 0.946 26 H 0.018 0.982 27 H 0.059 0.941 28 H 0.026 0.974 29 H 0.270 0.730 30 H 0.341 0.659 31 H 0.052 0.948 32 H 0.050 0.950 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.069 0.931 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.067 0.933 40 H 0.079 0.921 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.207 1.899 8.047 8.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.149 4.149 3 C 0.093 3.907 4 H 0.048 0.952 5 C -0.623 4.623 6 H 0.064 0.936 7 C -0.177 4.177 8 N -0.546 5.546 9 Si 0.890 3.110 10 H -0.216 1.216 11 H -0.219 1.219 12 H -0.214 1.214 13 N -0.291 5.291 14 C 0.037 3.963 15 C 0.271 3.729 16 O -0.423 6.423 17 O -0.214 6.214 18 C -0.059 4.059 19 C -0.179 4.179 20 C -0.007 4.007 21 O -0.308 6.308 22 C -0.003 4.003 23 C -0.169 4.169 24 H 0.068 0.932 25 H 0.073 0.927 26 H 0.038 0.962 27 H 0.078 0.922 28 H 0.045 0.955 29 H 0.082 0.918 30 H 0.160 0.840 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.118 0.882 34 H 0.107 0.893 35 H 0.087 0.913 36 H 0.104 0.896 37 H 0.096 0.904 38 H 0.105 0.895 39 H 0.085 0.915 40 H 0.098 0.902 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.039 1.488 7.053 7.283 hybrid contribution 0.468 1.296 0.621 1.512 sum -0.570 2.784 7.674 8.183 Atomic orbital electron populations 1.21455 0.96912 0.97887 1.01800 1.21671 0.95920 0.98622 0.98711 1.19417 0.94382 0.90416 0.86438 0.95171 1.22033 1.31351 1.16865 0.92046 0.93561 1.25448 0.94753 0.96374 1.01104 1.70762 1.22554 1.28632 1.32697 0.83660 0.75959 0.75465 0.75938 1.21603 1.21858 1.21363 1.60900 1.18466 1.29203 1.20534 1.21055 0.90551 0.91308 0.93402 1.25570 0.79428 0.85895 0.82026 1.90558 1.48763 1.35994 1.66997 1.87130 1.62469 1.49833 1.21925 1.23153 0.93144 0.90659 0.98969 1.22319 0.98084 0.95667 1.01871 1.22631 0.97221 0.93624 0.87262 1.87832 1.65948 1.45361 1.31631 1.22439 0.92637 0.85937 0.99325 1.22090 1.00883 0.98746 0.95147 0.93189 0.92706 0.96243 0.92233 0.95520 0.91796 0.83956 0.92954 0.93171 0.88215 0.89292 0.91263 0.89553 0.90400 0.89535 0.91451 0.90227 0.90879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.41 9.50 37.16 0.35 -2.06 16 2 C -0.11 -2.32 5.30 -26.73 -0.14 -2.46 16 3 C 0.20 4.32 0.40 -68.87 -0.03 4.30 16 4 H 0.03 0.73 3.90 -51.93 -0.20 0.53 16 5 C -0.58 -14.26 6.25 -34.44 -0.22 -14.48 16 6 H 0.05 1.17 7.36 -52.49 -0.39 0.78 16 7 C 0.03 0.73 5.17 -17.82 -0.09 0.64 16 8 N -0.91 -25.03 13.05 55.43 0.72 -24.31 16 9 Si 1.06 23.87 29.92 -169.99 -5.09 18.78 16 10 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 12 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 13 N -0.66 -12.18 3.84 -95.23 -0.37 -12.55 16 14 C 0.13 2.29 0.52 -132.57 -0.07 2.22 16 15 C 0.43 8.51 6.64 36.01 0.24 8.75 16 16 O -0.53 -11.14 15.80 -18.75 -0.30 -11.43 16 17 O -0.30 -6.31 6.61 -39.25 -0.26 -6.57 16 18 C 0.04 0.62 10.56 101.05 1.07 1.69 16 19 C -0.14 -2.36 4.58 -26.49 -0.12 -2.48 16 20 C 0.07 1.05 6.37 37.30 0.24 1.29 16 21 O -0.39 -6.04 10.77 -35.23 -0.38 -6.42 16 22 C 0.07 1.02 6.68 37.21 0.25 1.27 16 23 C -0.13 -1.99 4.70 -26.59 -0.12 -2.12 16 24 H 0.05 0.93 7.37 -51.93 -0.38 0.54 16 25 H 0.05 1.17 7.47 -51.93 -0.39 0.78 16 26 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 1.41 6.25 -51.93 -0.32 1.09 16 28 H 0.03 0.51 5.73 -51.93 -0.30 0.21 16 29 H 0.27 7.42 5.96 -40.82 -0.24 7.18 16 30 H 0.34 6.57 7.80 -39.29 -0.31 6.26 16 31 H 0.05 0.87 8.13 -51.92 -0.42 0.44 16 32 H 0.05 0.82 8.13 -51.93 -0.42 0.40 16 33 H 0.10 1.70 8.14 -51.93 -0.42 1.28 16 34 H 0.09 1.60 6.12 -51.93 -0.32 1.29 16 35 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.08 1.27 5.43 -51.93 -0.28 0.99 16 38 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.07 0.96 7.75 -51.93 -0.40 0.56 16 40 H 0.08 1.26 7.77 -51.93 -0.40 0.86 16 41 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 LS Contribution 312.01 15.07 4.70 4.70 Total: -1.00 -27.90 312.01 -5.72 -33.62 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -6.11 Total: 7.61 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: 1.35 Total: -3.44 kcal Atomic # 7 Polarization: -37.21 SS G_CDS: 0.36 Total: -36.86 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: -0.94 Total: -24.42 kcal Atomic # 14 Polarization: 23.87 SS G_CDS: -5.09 Total: 18.78 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -27.90 -5.72 -33.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255155772.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.771 kcal (2) G-P(sol) polarization free energy of solvation -27.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds