Wall clock time and date at job start Mon Mar 30 2020 01:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45205 * 109.47210 * 2 1 4 4 C 1.34229 * 117.00234 * 179.97438 * 3 2 1 5 5 O 1.20828 * 119.99808 * 0.02562 * 4 3 2 6 6 C 1.50704 * 119.99892 * 179.97438 * 4 3 2 7 7 C 1.52996 * 109.46754 * 177.88392 * 6 4 3 8 8 N 1.46900 * 113.00098 * 290.80317 * 7 6 4 9 9 C 1.46899 * 111.00143 * 293.67021 * 8 7 6 10 10 H 1.09002 * 109.46920 * 23.25345 * 9 8 7 11 11 C 1.50696 * 109.47085 * 263.25340 * 9 8 7 12 12 H 1.07994 * 120.00326 * 0.02562 * 11 9 8 13 13 C 1.37884 * 119.99598 * 179.97438 * 11 9 8 14 14 N 1.31510 * 120.00024 * 0.02562 * 13 11 9 15 15 Si 1.86806 * 119.99752 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.46869 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.46656 * 120.00631 * 15 13 11 18 18 H 1.48501 * 109.46862 * 240.00213 * 15 13 11 19 19 C 1.53001 * 109.46825 * 143.25160 * 9 8 7 20 20 C 1.53001 * 109.47365 * 295.33412 * 19 9 8 21 21 C 1.54032 * 113.81587 * 158.81698 * 7 6 4 22 22 O 1.44173 * 85.52185 * 223.19398 * 21 7 6 23 23 C 1.44180 * 93.33675 * 24.19442 * 22 21 7 24 24 H 1.08997 * 109.46896 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47068 * 299.99768 * 1 2 3 26 26 H 1.08998 * 109.47215 * 59.99729 * 1 2 3 27 27 H 1.08992 * 109.47273 * 240.00446 * 2 1 3 28 28 H 1.08999 * 109.47236 * 119.99721 * 2 1 3 29 29 H 1.09000 * 109.46900 * 297.88419 * 6 4 3 30 30 H 1.08996 * 109.46872 * 57.88736 * 6 4 3 31 31 H 1.00903 * 111.00323 * 169.71789 * 8 7 6 32 32 H 0.97006 * 120.00212 * 179.97438 * 14 13 11 33 33 H 1.09000 * 109.47259 * 55.33874 * 19 9 8 34 34 H 1.09000 * 109.46616 * 175.33611 * 19 9 8 35 35 H 1.08991 * 109.47025 * 305.45374 * 20 19 9 36 36 H 1.09001 * 109.46796 * 65.45362 * 20 19 9 37 37 H 1.09003 * 109.46710 * 185.44923 * 20 19 9 38 38 H 1.08996 * 113.86546 * 337.34362 * 21 7 6 39 39 H 1.09001 * 113.86400 * 109.04719 * 21 7 6 40 40 H 1.09002 * 113.86139 * 221.65614 * 23 22 21 41 41 H 1.09002 * 113.86459 * 89.95736 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9207 2.9375 0.0000 7 6 5.4476 2.8578 0.0540 8 7 5.9515 2.3670 1.3437 9 6 5.6616 3.3231 2.4206 10 1 4.8166 3.9489 2.1331 11 6 6.8702 4.1905 2.6610 12 1 7.7641 4.0463 2.0725 13 6 6.8343 5.1690 3.6318 14 7 5.7456 5.3449 4.3482 15 14 8.3323 6.2447 3.9294 16 1 9.4192 5.8483 2.9984 17 1 7.9747 7.6669 3.6955 18 1 8.7934 6.0743 5.3307 19 6 5.3185 2.5599 3.7014 20 6 4.0252 1.7693 3.4932 21 6 6.1550 4.1300 -0.4497 22 8 7.0471 3.2269 -1.1333 23 6 6.0776 2.1602 -1.1662 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5137 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.6158 3.4564 -0.9088 30 1 3.5543 3.4825 0.8699 31 1 6.9393 2.1673 1.2937 32 1 5.7204 6.0331 5.0314 33 1 6.1294 1.8728 3.9433 34 1 5.1845 3.2665 4.5205 35 1 3.2374 2.4435 3.1574 36 1 4.1883 0.9976 2.7409 37 1 3.7288 1.3036 4.4331 38 1 5.5457 4.7381 -1.1183 39 1 6.6340 4.7100 0.3391 40 1 6.4953 1.1778 -0.9457 41 1 5.4446 2.1668 -2.0536 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255156507.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:05 Heat of formation + Delta-G solvation = -122.640367 kcal Electronic energy + Delta-G solvation = -22623.271779 eV Core-core repulsion = 19310.793962 eV Total energy + Delta-G solvation = -3312.477817 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.04993 -40.86390 -37.60908 -37.29980 -34.38065 -33.19997 -32.55266 -31.17969 -28.39685 -27.41209 -27.12284 -24.62371 -24.10655 -22.19793 -21.48966 -19.96767 -18.73639 -18.54329 -17.64280 -17.39776 -17.13459 -16.69106 -16.57947 -16.08300 -15.40018 -15.26334 -14.89341 -14.67610 -14.23635 -13.85289 -13.56441 -13.45192 -13.26647 -13.21021 -12.97924 -12.77740 -12.64597 -12.61582 -12.42056 -12.30470 -12.15127 -11.58866 -11.49113 -11.39113 -11.36969 -11.24841 -10.85349 -10.64582 -10.42962 -9.03478 -8.05704 -6.23379 1.37803 1.39721 1.42975 1.51878 1.79764 2.41788 2.81135 3.15592 3.26739 3.62666 3.76962 4.07633 4.09753 4.19290 4.23412 4.37018 4.42419 4.53388 4.56105 4.66990 4.73829 4.78934 4.89838 4.91438 4.98060 5.04744 5.12272 5.19202 5.21290 5.26151 5.36450 5.53432 5.60270 5.64085 5.75717 6.07561 6.18713 6.40642 6.76515 6.94680 7.00609 7.46409 8.92439 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.021419 B = 0.006189 C = 0.005208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.931931 B = 4523.100025 C = 5374.539942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.055 3.945 3 O -0.369 6.369 4 C 0.472 3.528 5 O -0.510 6.510 6 C -0.103 4.103 7 C 0.077 3.923 8 N -0.652 5.652 9 C 0.225 3.775 10 H 0.019 0.981 11 C -0.548 4.548 12 H 0.049 0.951 13 C 0.028 3.972 14 N -0.906 5.906 15 Si 0.942 3.058 16 H -0.275 1.275 17 H -0.280 1.280 18 H -0.284 1.284 19 C -0.101 4.101 20 C -0.121 4.121 21 C 0.001 3.999 22 O -0.404 6.404 23 C 0.054 3.946 24 H 0.099 0.901 25 H 0.063 0.937 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.058 0.942 29 H 0.137 0.863 30 H 0.101 0.899 31 H 0.333 0.667 32 H 0.262 0.738 33 H 0.021 0.979 34 H 0.065 0.935 35 H 0.034 0.966 36 H 0.045 0.955 37 H 0.040 0.960 38 H 0.101 0.899 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.551 -6.289 -9.835 15.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.019 4.019 3 O -0.287 6.287 4 C 0.315 3.685 5 O -0.398 6.398 6 C -0.141 4.141 7 C -0.017 4.017 8 N -0.281 5.281 9 C 0.117 3.883 10 H 0.036 0.964 11 C -0.587 4.587 12 H 0.067 0.933 13 C -0.172 4.172 14 N -0.545 5.545 15 Si 0.769 3.231 16 H -0.200 1.200 17 H -0.206 1.206 18 H -0.210 1.210 19 C -0.140 4.140 20 C -0.178 4.178 21 C -0.078 4.078 22 O -0.323 6.323 23 C -0.023 4.023 24 H 0.118 0.882 25 H 0.082 0.918 26 H 0.091 0.909 27 H 0.090 0.910 28 H 0.077 0.923 29 H 0.155 0.845 30 H 0.119 0.881 31 H 0.151 0.849 32 H 0.071 0.929 33 H 0.039 0.961 34 H 0.083 0.917 35 H 0.053 0.947 36 H 0.064 0.936 37 H 0.059 0.941 38 H 0.119 0.881 39 H 0.108 0.892 40 H 0.107 0.893 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -9.725 -6.886 -9.638 15.326 hybrid contribution 1.503 1.242 0.544 2.024 sum -8.222 -5.644 -9.093 13.496 Atomic orbital electron populations 1.21810 0.90570 1.04231 1.03579 1.23202 0.96937 0.79537 1.02211 1.86504 1.24431 1.33497 1.84281 1.23547 0.80388 0.92634 0.71923 1.90636 1.60605 1.43416 1.45096 1.21570 0.94261 0.91565 1.06726 1.23534 0.92770 0.93181 0.92205 1.60698 1.20988 1.44502 1.01888 1.18963 0.94356 0.87625 0.87385 0.96362 1.22067 1.00259 1.17319 1.19018 0.93310 1.25512 0.97883 0.98261 0.95582 1.69979 1.28188 1.33460 1.22893 0.85752 0.80603 0.79012 0.77696 1.19971 1.20562 1.21004 1.21377 0.94889 0.97293 1.00443 1.21531 0.97466 0.99121 0.99695 1.25005 0.91960 0.94823 0.95974 1.89617 1.34734 1.26949 1.81028 1.24184 0.89343 0.92516 0.96235 0.88236 0.91832 0.90937 0.91016 0.92333 0.84495 0.88129 0.84921 0.92864 0.96062 0.91696 0.94705 0.93598 0.94124 0.88142 0.89234 0.89335 0.88207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 10.29 71.98 0.74 -1.46 16 2 C 0.05 1.21 6.19 71.98 0.45 1.65 16 3 O -0.37 -10.20 10.22 -51.41 -0.53 -10.72 16 4 C 0.47 14.66 7.74 71.24 0.55 15.21 16 5 O -0.51 -18.04 14.56 21.96 0.32 -17.72 16 6 C -0.10 -3.09 5.27 29.85 0.16 -2.93 16 7 C 0.08 2.65 0.30 4.22 0.00 2.65 16 8 N -0.65 -26.92 5.44 -484.14 -2.63 -29.55 16 9 C 0.22 10.54 1.60 44.17 0.07 10.62 16 10 H 0.02 0.92 6.04 -2.39 -0.01 0.91 16 11 C -0.55 -28.31 6.75 25.60 0.17 -28.14 16 12 H 0.05 2.58 7.31 -2.91 -0.02 2.56 16 13 C 0.03 1.48 5.29 84.66 0.45 1.93 16 14 N -0.91 -49.48 11.29 21.45 0.24 -49.24 16 15 Si 0.94 42.60 29.54 68.60 2.03 44.62 16 16 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 17 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 18 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 19 C -0.10 -4.81 5.45 30.60 0.17 -4.65 16 20 C -0.12 -4.93 9.73 71.98 0.70 -4.22 16 21 C 0.00 0.03 8.28 72.27 0.60 0.63 16 22 O -0.40 -14.89 12.38 -148.98 -1.84 -16.73 16 23 C 0.05 1.71 7.07 72.27 0.51 2.22 16 24 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.07 1.49 8.13 -2.39 -0.02 1.47 16 28 H 0.06 1.41 8.13 -2.39 -0.02 1.39 16 29 H 0.14 3.02 7.99 -2.39 -0.02 3.00 16 30 H 0.10 3.34 6.45 -2.39 -0.02 3.33 16 31 H 0.33 14.64 7.97 -89.69 -0.72 13.92 16 32 H 0.26 13.70 8.31 -92.70 -0.77 12.93 16 33 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.06 3.44 5.96 -2.39 -0.01 3.43 16 35 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.04 1.87 7.90 -2.39 -0.02 1.85 16 37 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.10 2.82 7.99 -2.39 -0.02 2.81 16 39 H 0.09 3.75 5.79 -2.39 -0.01 3.74 16 40 H 0.09 2.94 8.12 -2.39 -0.02 2.92 16 41 H 0.10 2.57 8.10 -2.39 -0.02 2.55 16 Total: -1.00 -60.09 331.76 2.45 -57.63 By element: Atomic # 1 Polarization: 27.90 SS G_CDS: 0.30 Total: 28.20 kcal Atomic # 6 Polarization: -11.05 SS G_CDS: 4.56 Total: -6.49 kcal Atomic # 7 Polarization: -76.40 SS G_CDS: -2.39 Total: -78.79 kcal Atomic # 8 Polarization: -43.13 SS G_CDS: -2.05 Total: -45.18 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.62 kcal Total: -60.09 2.45 -57.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255156507.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.007 kcal (2) G-P(sol) polarization free energy of solvation -60.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds