Wall clock time and date at job start Mon Mar 30 2020 01:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47036 * 2 1 4 4 H 1.09007 * 109.46884 * 54.49765 * 3 2 1 5 5 C 1.50698 * 109.46853 * 174.48806 * 3 2 1 6 6 H 1.08008 * 119.99573 * 120.00017 * 5 3 2 7 7 C 1.37879 * 120.00648 * 300.00296 * 5 3 2 8 8 N 1.31515 * 119.99761 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 120.00191 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.46770 * 60.00035 * 9 7 5 11 11 H 1.48499 * 109.46782 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47190 * 300.00011 * 9 7 5 13 13 N 1.46891 * 109.47598 * 294.49267 * 3 2 1 14 14 C 1.46901 * 111.00430 * 156.28132 * 13 3 2 15 15 H 1.09004 * 109.61030 * 335.30653 * 14 13 3 16 16 C 1.53171 * 109.54330 * 95.52895 * 14 13 3 17 17 C 1.53094 * 109.16501 * 62.89046 * 16 14 13 18 18 O 1.42906 * 109.41528 * 57.60311 * 17 16 14 19 19 C 1.42904 * 114.09932 * 298.84398 * 18 17 16 20 20 C 1.53091 * 109.41197 * 61.16004 * 19 18 17 21 21 H 1.09000 * 109.52845 * 62.29778 * 20 19 18 22 22 C 1.50706 * 109.52301 * 182.48666 * 20 19 18 23 23 O 1.20823 * 120.00302 * 128.54543 * 22 20 19 24 24 O 1.34232 * 119.99293 * 308.54696 * 22 20 19 25 25 C 1.45205 * 116.99381 * 179.97438 * 24 22 20 26 26 H 1.09006 * 109.47473 * 186.22734 * 1 2 3 27 27 H 1.09004 * 109.47282 * 306.22283 * 1 2 3 28 28 H 1.09002 * 109.47028 * 66.22215 * 1 2 3 29 29 H 1.08999 * 109.47152 * 239.99730 * 2 1 3 30 30 H 1.08999 * 109.46767 * 119.99937 * 2 1 3 31 31 H 0.96993 * 120.00225 * 179.97438 * 8 7 5 32 32 H 1.00910 * 110.99998 * 32.32539 * 13 3 2 33 33 H 1.08993 * 109.52481 * 302.98286 * 16 14 13 34 34 H 1.09002 * 109.52424 * 182.78954 * 16 14 13 35 35 H 1.08993 * 109.48512 * 177.58980 * 17 16 14 36 36 H 1.09004 * 109.47774 * 297.62804 * 17 16 14 37 37 H 1.09001 * 109.47685 * 181.13885 * 19 18 17 38 38 H 1.08994 * 109.48023 * 301.16481 * 19 18 17 39 39 H 1.08993 * 109.47398 * 300.00343 * 25 24 22 40 40 H 1.09000 * 109.46738 * 60.00411 * 25 24 22 41 41 H 1.08999 * 109.46770 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5983 1.9839 0.8367 5 6 3.5407 1.4446 0.1365 6 1 4.1526 1.8869 -0.6359 7 6 4.1329 0.8820 1.2472 8 7 3.3879 0.3438 2.1880 9 14 5.9933 0.8840 1.4159 10 1 6.4887 2.2839 1.4156 11 1 6.3754 0.2245 2.6904 12 1 6.5945 0.1459 0.2763 13 7 1.6619 2.0956 -1.2602 14 6 1.6113 3.5552 -1.1023 15 1 1.4298 3.8040 -0.0567 16 6 2.9426 4.1656 -1.5508 17 6 3.1510 3.8781 -3.0400 18 8 2.0521 4.4078 -3.7844 19 6 0.7867 3.8394 -3.4410 20 6 0.4834 4.1254 -1.9679 21 1 0.4138 5.2020 -1.8126 22 6 -0.8217 3.4751 -1.5870 23 8 -0.8802 2.7634 -0.6123 24 8 -1.9190 3.6866 -2.3306 25 6 -3.1408 3.0276 -1.9047 26 1 -0.3634 -1.0216 0.1115 27 1 -0.3634 0.6073 0.8291 28 1 -0.3633 0.4144 -0.9405 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.8044 -0.0524 2.9692 32 1 0.7827 1.7382 -1.6032 33 1 3.7574 3.7240 -0.9771 34 1 2.9228 5.2431 -1.3872 35 1 4.0763 4.3468 -3.3747 36 1 3.2111 2.8012 -3.1974 37 1 0.0090 4.2803 -4.0645 38 1 0.8160 2.7621 -3.6037 39 1 -2.9905 1.9481 -1.9047 40 1 -3.4003 3.3583 -0.8990 41 1 -3.9489 3.2824 -2.5903 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255161929.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:10 Heat of formation + Delta-G solvation = -133.120364 kcal Electronic energy + Delta-G solvation = -23022.533865 eV Core-core repulsion = 19709.601601 eV Total energy + Delta-G solvation = -3312.932263 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.77575 -38.82817 -36.63225 -35.73501 -33.43011 -31.67531 -31.30247 -29.22399 -27.67910 -26.28433 -24.20985 -24.02537 -22.63528 -21.15274 -19.58680 -18.85625 -17.44792 -16.70078 -16.60130 -16.30558 -15.48126 -15.39954 -14.85676 -14.68370 -14.09651 -13.90455 -13.30387 -13.15792 -12.85979 -12.67604 -12.40419 -12.12021 -11.94241 -11.68185 -11.41893 -11.17986 -11.02621 -10.81650 -10.73309 -10.66426 -10.58754 -10.27945 -10.00167 -9.79080 -9.53031 -9.49130 -9.15615 -8.90401 -8.28680 -7.21950 -5.91721 -3.96053 2.31764 2.75901 3.34780 3.39799 3.41968 4.15433 4.46544 4.70028 4.91903 5.04172 5.09072 5.17055 5.21542 5.37804 5.42503 5.50781 5.58190 5.67362 5.87398 5.94655 6.09796 6.32790 6.34488 6.36444 6.43596 6.51101 6.58504 6.62248 6.77631 7.02645 7.24961 7.29353 7.49646 7.61445 7.84763 7.86549 7.95949 8.34457 8.45403 8.78787 9.10856 9.68137 11.13512 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.019481 B = 0.007237 C = 0.005647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.960220 B = 3867.823100 C = 4957.140563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.123 4.123 3 C 0.226 3.774 4 H 0.005 0.995 5 C -0.494 4.494 6 H 0.063 0.937 7 C 0.055 3.945 8 N -0.894 5.894 9 Si 0.892 3.108 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.278 1.278 13 N -0.676 5.676 14 C 0.111 3.889 15 H 0.057 0.943 16 C -0.141 4.141 17 C 0.064 3.936 18 O -0.384 6.384 19 C 0.083 3.917 20 C -0.125 4.125 21 H 0.114 0.886 22 C 0.458 3.542 23 O -0.480 6.480 24 O -0.363 6.363 25 C 0.035 3.965 26 H 0.028 0.972 27 H 0.046 0.954 28 H 0.031 0.969 29 H 0.035 0.965 30 H 0.097 0.903 31 H 0.259 0.741 32 H 0.317 0.683 33 H 0.101 0.899 34 H 0.056 0.944 35 H 0.084 0.916 36 H 0.071 0.929 37 H 0.095 0.905 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.689 6.781 -9.236 14.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.161 4.161 3 C 0.119 3.881 4 H 0.023 0.977 5 C -0.533 4.533 6 H 0.081 0.919 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.720 3.280 10 H -0.205 1.205 11 H -0.216 1.216 12 H -0.204 1.204 13 N -0.309 5.309 14 C 0.000 4.000 15 H 0.075 0.925 16 C -0.179 4.179 17 C -0.012 4.012 18 O -0.303 6.303 19 C 0.005 3.995 20 C -0.145 4.145 21 H 0.132 0.868 22 C 0.299 3.701 23 O -0.365 6.365 24 O -0.280 6.280 25 C -0.059 4.059 26 H 0.047 0.953 27 H 0.065 0.935 28 H 0.050 0.950 29 H 0.054 0.946 30 H 0.115 0.885 31 H 0.069 0.931 32 H 0.136 0.864 33 H 0.119 0.881 34 H 0.074 0.926 35 H 0.102 0.898 36 H 0.089 0.911 37 H 0.114 0.886 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.058 6.582 -9.125 13.839 hybrid contribution -0.110 -0.253 1.189 1.220 sum -8.168 6.329 -7.937 13.030 Atomic orbital electron populations 1.21780 0.99185 0.98638 0.99956 1.21726 0.91518 1.00360 1.02541 1.19157 0.94882 0.89951 0.84098 0.97694 1.21244 0.91346 1.36493 1.04172 0.91899 1.24967 0.97807 0.95783 0.95990 1.69879 1.34638 1.39359 1.09548 0.86667 0.86111 0.78072 0.77125 1.20468 1.21571 1.20378 1.60951 1.34875 1.01120 1.33963 1.21324 0.91106 0.90888 0.96694 0.92497 1.22253 0.99284 0.99190 0.97146 1.22599 0.87904 0.99874 0.90827 1.87862 1.15113 1.65268 1.62078 1.22308 0.86624 0.99167 0.91352 1.22224 0.89484 1.02238 1.00595 0.86820 1.23774 0.85618 0.79393 0.81279 1.90784 1.85147 1.34428 1.26160 1.86505 1.18996 1.67923 1.54586 1.23224 0.83572 0.97920 1.01147 0.95299 0.93509 0.95002 0.94584 0.88505 0.93127 0.86356 0.88073 0.92573 0.89834 0.91081 0.88647 0.92051 0.91809 0.92060 0.88406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 8.76 37.16 0.33 -2.61 16 2 C -0.12 -3.00 5.37 -26.73 -0.14 -3.14 16 3 C 0.23 5.63 2.00 -68.87 -0.14 5.50 16 4 H 0.01 0.15 7.40 -51.93 -0.38 -0.23 16 5 C -0.49 -13.19 7.91 -34.44 -0.27 -13.46 16 6 H 0.06 1.65 6.35 -52.48 -0.33 1.32 16 7 C 0.05 1.51 5.29 -17.82 -0.09 1.41 16 8 N -0.89 -25.62 11.29 55.43 0.63 -24.99 16 9 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 N -0.68 -14.03 4.77 -100.77 -0.48 -14.51 16 14 C 0.11 2.05 1.87 -67.53 -0.13 1.92 16 15 H 0.06 1.20 7.24 -51.93 -0.38 0.83 16 16 C -0.14 -2.41 5.66 -26.59 -0.15 -2.56 16 17 C 0.06 1.01 6.68 37.21 0.25 1.26 16 18 O -0.38 -5.90 10.77 -35.23 -0.38 -6.28 16 19 C 0.08 1.16 5.78 37.20 0.22 1.38 16 20 C -0.13 -1.88 2.60 -91.63 -0.24 -2.12 16 21 H 0.11 1.51 8.14 -51.93 -0.42 1.09 16 22 C 0.46 7.12 6.52 36.01 0.23 7.35 16 23 O -0.48 -8.95 12.56 -18.75 -0.24 -9.19 16 24 O -0.36 -4.74 10.26 -39.26 -0.40 -5.14 16 25 C 0.04 0.36 10.56 101.05 1.07 1.43 16 26 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.05 1.05 7.98 -51.93 -0.41 0.64 16 28 H 0.03 0.63 5.83 -51.93 -0.30 0.33 16 29 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.10 2.64 5.94 -51.93 -0.31 2.34 16 31 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 32 H 0.32 6.42 3.82 -39.29 -0.15 6.27 16 33 H 0.10 1.99 5.89 -51.93 -0.31 1.68 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.07 1.23 7.75 -51.93 -0.40 0.83 16 37 H 0.10 1.13 8.05 -51.93 -0.42 0.71 16 38 H 0.06 0.91 7.45 -51.93 -0.39 0.53 16 39 H 0.06 0.69 8.13 -51.93 -0.42 0.26 16 40 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 41 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 316.63 15.07 4.77 4.77 Total: -1.00 -29.51 316.63 -6.49 -36.00 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -6.30 Total: 6.75 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: 0.93 Total: -3.65 kcal Atomic # 7 Polarization: -39.65 SS G_CDS: 0.15 Total: -39.50 kcal Atomic # 8 Polarization: -19.59 SS G_CDS: -1.02 Total: -20.61 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.51 -6.49 -36.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255161929.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.119 kcal (2) G-P(sol) polarization free energy of solvation -29.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds