Wall clock time and date at job start Mon Mar 30 2020 01:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46811 * 2 1 4 4 H 1.09004 * 109.47117 * 304.10428 * 3 2 1 5 5 C 1.50699 * 109.46791 * 184.10572 * 3 2 1 6 6 H 1.08005 * 120.00063 * 239.99819 * 5 3 2 7 7 C 1.37876 * 120.00004 * 60.00017 * 5 3 2 8 8 N 1.31512 * 120.00412 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99730 * 180.02562 * 7 5 3 10 10 H 1.48491 * 109.47311 * 90.00066 * 9 7 5 11 11 H 1.48500 * 109.46872 * 209.99900 * 9 7 5 12 12 H 1.48504 * 109.47055 * 329.99454 * 9 7 5 13 13 N 1.46899 * 109.47081 * 64.10566 * 3 2 1 14 14 C 1.46907 * 110.99859 * 205.70338 * 13 3 2 15 15 H 1.09000 * 109.53628 * 322.11660 * 14 13 3 16 16 C 1.53169 * 109.54208 * 82.38535 * 14 13 3 17 17 C 1.53090 * 109.16562 * 62.88848 * 16 14 13 18 18 O 1.42899 * 109.41540 * 57.60684 * 17 16 14 19 19 C 1.42910 * 114.09645 * 298.84359 * 18 17 16 20 20 C 1.53085 * 109.41444 * 61.15608 * 19 18 17 21 21 H 1.09005 * 109.51774 * 62.29963 * 20 19 18 22 22 C 1.50697 * 109.57465 * 182.45313 * 20 19 18 23 23 O 1.20823 * 120.00030 * 119.71938 * 22 20 19 24 24 O 1.34234 * 120.00233 * 299.72335 * 22 20 19 25 25 C 1.45196 * 117.00251 * 180.02562 * 24 22 20 26 26 H 1.09000 * 109.46988 * 294.46737 * 1 2 3 27 27 H 1.08998 * 109.46703 * 174.47193 * 1 2 3 28 28 H 1.08998 * 109.46967 * 54.47283 * 1 2 3 29 29 H 1.09004 * 109.46902 * 120.00030 * 2 1 3 30 30 H 1.08994 * 109.46914 * 239.99588 * 2 1 3 31 31 H 0.97001 * 120.00172 * 180.02562 * 8 7 5 32 32 H 1.00901 * 111.00251 * 81.75121 * 13 3 2 33 33 H 1.09004 * 109.52201 * 182.79260 * 16 14 13 34 34 H 1.09002 * 109.52505 * 302.98011 * 16 14 13 35 35 H 1.09004 * 109.47807 * 297.61970 * 17 16 14 36 36 H 1.09005 * 109.48161 * 177.59073 * 17 16 14 37 37 H 1.08998 * 109.47949 * 301.17295 * 19 18 17 38 38 H 1.09004 * 109.48787 * 181.15214 * 19 18 17 39 39 H 1.09000 * 109.47240 * 179.97438 * 25 24 22 40 40 H 1.09005 * 109.46906 * 299.99150 * 25 24 22 41 41 H 1.08996 * 109.47303 * 59.99511 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6178 1.9772 -0.8510 5 6 3.5436 1.4437 -0.1017 6 1 4.1374 1.8924 0.6809 7 6 4.1611 0.8721 -1.1939 8 7 3.4381 0.3254 -2.1467 9 14 6.0249 0.8730 -1.3196 10 1 6.5645 -0.3557 -0.6839 11 1 6.4245 0.9070 -2.7494 12 1 6.5672 2.0687 -0.6256 13 7 1.6329 2.1058 1.2459 14 6 1.5405 3.5604 1.0621 15 1 2.3442 3.8968 0.4071 16 6 0.1868 3.9129 0.4381 17 6 -0.9317 3.5060 1.4010 18 8 -0.7426 4.1655 2.6545 19 6 0.4856 3.8370 3.3071 20 6 1.6610 4.2572 2.4208 21 1 1.6421 5.3378 2.2789 22 6 2.9570 3.8582 3.0782 23 8 3.7082 3.0949 2.5189 24 8 3.2767 4.3507 4.2853 25 6 4.5408 3.9234 4.8579 26 1 -0.3633 0.4256 0.9354 27 1 -0.3633 -1.0229 -0.0990 28 1 -0.3633 0.5972 -0.8363 29 1 1.8934 -0.5139 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 3.8726 -0.0771 -2.9150 32 1 2.2624 1.8760 2.0003 33 1 0.1381 4.9865 0.2561 34 1 0.0693 3.3772 -0.5039 35 1 -0.9077 2.4266 1.5507 36 1 -1.8956 3.7935 0.9808 37 1 0.5282 2.7620 3.4819 38 1 0.5429 4.3627 4.2603 39 1 4.6762 4.3941 5.8316 40 1 4.5387 2.8397 4.9750 41 1 5.3565 4.2159 4.1967 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255161930.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:12 Heat of formation + Delta-G solvation = -134.459683 kcal Electronic energy + Delta-G solvation = -22986.025738 eV Core-core repulsion = 19673.035398 eV Total energy + Delta-G solvation = -3312.990341 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.68602 -38.82275 -36.54822 -35.62895 -33.40030 -31.64847 -31.11888 -29.60953 -27.58984 -25.93199 -24.23133 -23.98476 -22.68942 -21.12325 -19.47585 -18.83528 -17.38641 -16.64925 -16.58905 -16.34202 -15.51266 -15.44344 -14.84879 -14.52895 -14.03000 -13.86498 -13.24350 -13.09086 -12.89379 -12.64824 -12.46032 -11.98830 -11.92122 -11.56321 -11.33364 -11.18314 -11.02809 -10.84981 -10.66412 -10.64306 -10.53170 -10.23479 -10.08892 -9.81173 -9.52319 -9.41250 -9.27585 -8.83627 -8.26504 -7.19954 -5.88370 -3.96749 2.43694 2.84377 3.33232 3.39766 3.45237 4.12368 4.50463 4.75019 4.96130 5.09143 5.17898 5.22383 5.26146 5.38051 5.43693 5.49620 5.59278 5.63810 5.83800 5.92411 6.03813 6.26656 6.38786 6.44034 6.47188 6.51899 6.56002 6.60389 6.75519 7.16989 7.17868 7.42404 7.50669 7.64172 7.87108 8.00031 8.20739 8.28873 8.41232 8.79944 9.20059 9.69889 11.12866 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.015090 B = 0.008423 C = 0.005994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.126123 B = 3323.422709 C = 4670.091327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.106 4.106 3 C 0.218 3.782 4 H 0.030 0.970 5 C -0.534 4.534 6 H 0.073 0.927 7 C 0.062 3.938 8 N -0.893 5.893 9 Si 0.886 3.114 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.277 1.277 13 N -0.684 5.684 14 C 0.103 3.897 15 H 0.058 0.942 16 C -0.138 4.138 17 C 0.064 3.936 18 O -0.383 6.383 19 C 0.084 3.916 20 C -0.115 4.115 21 H 0.110 0.890 22 C 0.455 3.545 23 O -0.468 6.468 24 O -0.366 6.366 25 C 0.035 3.965 26 H 0.045 0.955 27 H 0.023 0.977 28 H 0.036 0.964 29 H 0.028 0.972 30 H 0.090 0.910 31 H 0.258 0.742 32 H 0.336 0.664 33 H 0.061 0.939 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.065 0.935 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.063 0.937 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.809 7.611 10.654 13.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.145 4.145 3 C 0.111 3.889 4 H 0.048 0.952 5 C -0.573 4.573 6 H 0.091 0.909 7 C -0.139 4.139 8 N -0.532 5.532 9 Si 0.715 3.285 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.202 1.202 13 N -0.319 5.319 14 C -0.008 4.008 15 H 0.076 0.924 16 C -0.177 4.177 17 C -0.012 4.012 18 O -0.302 6.302 19 C 0.006 3.994 20 C -0.135 4.135 21 H 0.128 0.872 22 C 0.296 3.704 23 O -0.352 6.352 24 O -0.283 6.283 25 C -0.058 4.058 26 H 0.064 0.936 27 H 0.042 0.958 28 H 0.055 0.945 29 H 0.047 0.953 30 H 0.108 0.892 31 H 0.068 0.932 32 H 0.157 0.843 33 H 0.080 0.920 34 H 0.100 0.900 35 H 0.089 0.911 36 H 0.101 0.899 37 H 0.083 0.917 38 H 0.112 0.888 39 H 0.115 0.885 40 H 0.082 0.918 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.319 7.289 10.296 13.691 hybrid contribution 2.645 -0.047 -0.418 2.679 sum -2.674 7.242 9.878 12.537 Atomic orbital electron populations 1.21711 0.99154 0.98228 1.00105 1.21502 0.91875 0.99498 1.01631 1.19118 0.92993 0.90754 0.86073 0.95196 1.22177 0.92877 1.36477 1.05788 0.90936 1.24939 0.97567 0.95497 0.95886 1.69883 1.34578 1.38995 1.09789 0.86696 0.86819 0.78263 0.76769 1.20929 1.21524 1.20213 1.61156 1.55882 1.04100 1.10754 1.21214 0.96826 0.91350 0.91416 0.92371 1.22155 0.94961 1.00552 1.00003 1.22591 0.97441 0.98063 0.83085 1.87863 1.37415 1.69749 1.35125 1.22303 0.82237 1.00927 0.93892 1.21991 0.90400 1.03317 0.97792 0.87194 1.23767 0.88634 0.78622 0.79413 1.90804 1.50513 1.31434 1.62406 1.86488 1.40144 1.67413 1.34256 1.23208 0.83357 1.01045 0.98232 0.93643 0.95781 0.94453 0.95329 0.89158 0.93244 0.84254 0.92021 0.89978 0.91092 0.89893 0.91701 0.88760 0.88516 0.91819 0.92053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.70 9.72 37.16 0.36 -2.34 16 2 C -0.11 -2.55 5.45 -26.73 -0.15 -2.70 16 3 C 0.22 5.34 1.79 -68.87 -0.12 5.21 16 4 H 0.03 0.80 6.92 -51.93 -0.36 0.44 16 5 C -0.53 -14.71 8.29 -34.44 -0.29 -15.00 16 6 H 0.07 2.06 5.69 -52.48 -0.30 1.76 16 7 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 8 N -0.89 -25.66 11.30 55.43 0.63 -25.03 16 9 Si 0.89 22.14 29.54 -169.99 -5.02 17.12 16 10 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 13 N -0.68 -13.97 4.22 -100.76 -0.43 -14.39 16 14 C 0.10 1.87 1.77 -67.53 -0.12 1.75 16 15 H 0.06 1.24 7.70 -51.93 -0.40 0.84 16 16 C -0.14 -2.19 5.70 -26.60 -0.15 -2.34 16 17 C 0.06 0.94 6.68 37.20 0.25 1.18 16 18 O -0.38 -5.64 10.77 -35.23 -0.38 -6.02 16 19 C 0.08 1.16 5.90 37.20 0.22 1.38 16 20 C -0.12 -1.74 2.64 -91.64 -0.24 -1.98 16 21 H 0.11 1.48 8.14 -51.93 -0.42 1.05 16 22 C 0.45 7.45 6.77 36.00 0.24 7.70 16 23 O -0.47 -9.50 11.81 -18.75 -0.22 -9.72 16 24 O -0.37 -5.06 10.50 -39.27 -0.41 -5.47 16 25 C 0.04 0.40 10.56 101.05 1.07 1.47 16 26 H 0.04 0.85 6.99 -51.93 -0.36 0.49 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.09 2.43 5.97 -51.93 -0.31 2.12 16 31 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 32 H 0.34 7.29 5.39 -39.29 -0.21 7.07 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.08 1.41 7.22 -51.93 -0.37 1.04 16 35 H 0.07 1.12 6.85 -51.93 -0.36 0.77 16 36 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.06 0.96 7.75 -51.93 -0.40 0.56 16 38 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 39 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 41 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 LS Contribution 320.21 15.07 4.83 4.83 Total: -1.00 -29.97 320.21 -6.47 -36.44 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -6.44 Total: 6.27 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: 0.98 Total: -4.02 kcal Atomic # 7 Polarization: -39.62 SS G_CDS: 0.20 Total: -39.42 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: -1.01 Total: -21.22 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.97 -6.47 -36.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255161930.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.021 kcal (2) G-P(sol) polarization free energy of solvation -29.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds