Wall clock time and date at job start Mon Mar 30 2020 01:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45199 * 109.47072 * 2 1 4 4 C 1.34236 * 117.00165 * 180.02562 * 3 2 1 5 5 O 1.20829 * 119.99499 * 359.97438 * 4 3 2 6 6 C 1.50701 * 120.00167 * 179.97438 * 4 3 2 7 7 H 1.09006 * 109.50635 * 55.08425 * 6 4 3 8 8 C 1.53096 * 109.50539 * 294.99689 * 6 4 3 9 9 N 1.47016 * 109.25624 * 183.21749 * 8 6 4 10 10 C 1.46895 * 110.99950 * 182.39619 * 9 8 6 11 11 H 1.08994 * 109.47601 * 54.99463 * 10 9 8 12 12 C 1.50702 * 109.46770 * 294.99547 * 10 9 8 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 10 9 14 14 C 1.37884 * 119.99942 * 179.72214 * 12 10 9 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 10 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 10 17 17 H 1.48501 * 109.47188 * 90.00793 * 16 14 12 18 18 H 1.48501 * 109.47085 * 210.00372 * 16 14 12 19 19 H 1.48498 * 109.47634 * 330.00608 * 16 14 12 20 20 C 1.52996 * 109.47260 * 175.00021 * 10 9 8 21 21 C 1.53001 * 109.47241 * 294.99440 * 20 10 9 22 22 C 1.47008 * 110.75470 * 58.61452 * 9 8 6 23 23 C 1.53098 * 109.25721 * 301.38680 * 22 9 8 24 24 O 1.43009 * 109.26159 * 56.84752 * 23 22 9 25 25 H 1.08994 * 109.47113 * 59.99874 * 1 2 3 26 26 H 1.08997 * 109.46904 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47066 * 299.99962 * 1 2 3 28 28 H 1.08996 * 109.47066 * 240.00038 * 2 1 3 29 29 H 1.08995 * 109.47563 * 119.99843 * 2 1 3 30 30 H 1.09004 * 109.50594 * 63.28081 * 8 6 4 31 31 H 1.08999 * 109.50828 * 303.15284 * 8 6 4 32 32 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 33 33 H 1.09003 * 109.47201 * 54.99295 * 20 10 9 34 34 H 1.09003 * 109.47459 * 174.99846 * 20 10 9 35 35 H 1.09003 * 109.46563 * 59.99857 * 21 20 10 36 36 H 1.08991 * 109.47795 * 179.97438 * 21 20 10 37 37 H 1.09003 * 109.47374 * 300.00289 * 21 20 10 38 38 H 1.09003 * 109.50513 * 61.31591 * 22 9 8 39 39 H 1.09000 * 109.51105 * 181.44976 * 22 9 8 40 40 H 1.09005 * 109.50656 * 296.91060 * 23 22 9 41 41 H 1.09004 * 109.50492 * 176.78161 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9375 -0.0012 7 1 3.5167 3.4988 0.8414 8 6 3.5521 3.6425 -1.3092 9 7 4.1807 4.9712 -1.3376 10 6 3.8053 5.7053 -2.5533 11 1 2.7190 5.7528 -2.6283 12 6 4.3616 4.9953 -3.7606 13 1 4.9361 4.0892 -3.6371 14 6 4.1318 5.4991 -5.0234 15 7 3.4318 6.6023 -5.1738 16 14 4.8148 4.6148 -6.5203 17 1 3.8215 3.6233 -7.0055 18 1 5.0937 5.6021 -7.5939 19 1 6.0722 3.9161 -6.1516 20 6 4.3746 7.1239 -2.4888 21 6 3.7163 7.8857 -1.3367 22 6 5.6417 4.8590 -1.2198 23 6 5.9893 4.1417 0.0873 24 8 5.3447 2.8653 0.1109 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 2.4693 3.7507 -1.3717 31 1 3.9090 3.0529 -2.1536 32 1 3.2704 6.9569 -6.0621 33 1 5.4511 7.0763 -2.3247 34 1 4.1725 7.6396 -3.4276 35 1 3.9183 7.3700 -0.3979 36 1 4.1221 8.8962 -1.2904 37 1 2.6397 7.9333 -1.5007 38 1 6.0321 4.2888 -2.0628 39 1 6.0843 5.8551 -1.2172 40 1 5.6461 4.7385 0.9324 41 1 7.0689 4.0054 0.1517 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255172513.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:57 Heat of formation + Delta-G solvation = -127.567440 kcal Electronic energy + Delta-G solvation = -22238.528968 eV Core-core repulsion = 18925.837497 eV Total energy + Delta-G solvation = -3312.691471 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.50594 -38.94150 -36.59234 -35.92454 -32.72689 -32.08952 -31.32391 -30.75918 -27.78382 -25.85944 -24.26462 -23.23426 -22.73290 -21.39545 -20.23619 -19.13892 -17.59574 -16.75850 -16.56439 -16.33657 -15.59578 -15.41507 -14.76397 -14.52348 -14.05349 -13.70936 -13.54993 -13.42945 -12.91719 -12.82714 -12.61880 -12.10398 -11.94199 -11.66893 -11.50554 -11.33501 -11.26622 -10.94175 -10.85329 -10.81051 -10.52526 -10.48159 -10.24066 -9.83426 -9.73802 -9.64316 -9.30585 -9.05915 -8.42427 -7.33196 -6.06029 -4.19189 2.32574 2.46062 3.23745 3.31291 3.35226 4.20288 4.35350 4.62883 4.85553 4.90789 5.04417 5.15898 5.19100 5.25807 5.31180 5.57015 5.60628 5.69180 5.73754 5.84795 5.89864 6.01302 6.29063 6.34907 6.41161 6.47149 6.51285 6.60636 6.68689 6.99814 7.09606 7.20072 7.29760 7.50263 7.67816 7.80144 7.91617 8.04127 8.13387 8.34203 8.88885 9.48873 10.93794 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.015521 B = 0.006064 C = 0.005324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.613507 B = 4616.090318 C = 5257.516912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.062 3.938 3 O -0.352 6.352 4 C 0.474 3.526 5 O -0.494 6.494 6 C 0.105 3.895 7 H 0.099 0.901 8 C 0.041 3.959 9 N -0.529 5.529 10 C 0.215 3.785 11 H 0.043 0.957 12 C -0.547 4.547 13 H 0.057 0.943 14 C 0.071 3.929 15 N -0.884 5.884 16 Si 0.887 3.113 17 H -0.281 1.281 18 H -0.285 1.285 19 H -0.275 1.275 20 C -0.112 4.112 21 C -0.139 4.139 22 C 0.017 3.983 23 C 0.065 3.935 24 O -0.369 6.369 25 H 0.069 0.931 26 H 0.078 0.922 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.088 0.912 31 H 0.053 0.947 32 H 0.262 0.738 33 H 0.034 0.966 34 H 0.094 0.906 35 H 0.047 0.953 36 H 0.026 0.974 37 H 0.040 0.960 38 H 0.052 0.948 39 H 0.086 0.914 40 H 0.055 0.945 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.763 -5.865 10.335 12.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.012 4.012 3 O -0.270 6.270 4 C 0.315 3.685 5 O -0.380 6.380 6 C 0.046 3.954 7 H 0.116 0.884 8 C -0.088 4.088 9 N -0.254 5.254 10 C 0.109 3.891 11 H 0.060 0.940 12 C -0.586 4.586 13 H 0.075 0.925 14 C -0.132 4.132 15 N -0.522 5.522 16 Si 0.715 3.285 17 H -0.207 1.207 18 H -0.211 1.211 19 H -0.200 1.200 20 C -0.150 4.150 21 C -0.196 4.196 22 C -0.111 4.111 23 C -0.011 4.011 24 O -0.288 6.288 25 H 0.088 0.912 26 H 0.096 0.904 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.106 0.894 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.053 0.947 34 H 0.112 0.888 35 H 0.066 0.934 36 H 0.045 0.955 37 H 0.059 0.941 38 H 0.070 0.930 39 H 0.104 0.896 40 H 0.073 0.927 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.710 -5.957 10.608 12.464 hybrid contribution 0.593 -0.849 -1.724 2.011 sum -2.118 -6.806 8.884 11.390 Atomic orbital electron populations 1.21801 0.92537 1.02798 1.03777 1.23019 0.95378 0.80226 1.02543 1.86500 1.23955 1.32323 1.84197 1.23298 0.80665 0.92015 0.72541 1.90649 1.60392 1.42793 1.44150 1.21480 0.83603 0.88916 1.01414 0.88384 1.22390 1.00887 0.91956 0.93583 1.62770 1.06692 1.13904 1.41986 1.19321 0.96378 0.89991 0.83434 0.93953 1.21705 1.34786 1.10216 0.91922 0.92532 1.24883 0.94743 0.94785 0.98811 1.69867 1.39093 1.20354 1.22860 0.86677 0.79511 0.79562 0.82791 1.20683 1.21091 1.19984 1.21628 0.97307 0.97237 0.98861 1.21720 1.00039 0.97985 0.99896 1.22682 0.91127 1.01073 0.96232 1.22854 0.96883 0.83403 0.97961 1.87957 1.16254 1.29953 1.94591 0.91165 0.90369 0.91460 0.91171 0.91365 0.89418 0.92836 0.92791 0.94736 0.88756 0.93433 0.95472 0.94072 0.92956 0.89620 0.92654 0.88623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 10.29 37.16 0.38 -0.95 16 2 C 0.06 0.73 6.19 37.16 0.23 0.96 16 3 O -0.35 -5.25 10.22 -39.27 -0.40 -5.65 16 4 C 0.47 8.14 7.29 36.01 0.26 8.41 16 5 O -0.49 -9.72 16.26 -25.46 -0.41 -10.13 16 6 C 0.11 1.80 3.33 -27.83 -0.09 1.71 16 7 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 8 C 0.04 0.79 4.63 -3.71 -0.02 0.77 16 9 N -0.53 -10.60 4.17 -227.73 -0.95 -11.55 16 10 C 0.21 5.03 1.74 -68.87 -0.12 4.91 16 11 H 0.04 1.10 8.12 -51.93 -0.42 0.68 16 12 C -0.55 -14.22 7.11 -34.44 -0.24 -14.47 16 13 H 0.06 1.51 5.79 -52.49 -0.30 1.21 16 14 C 0.07 1.88 5.30 -17.82 -0.09 1.78 16 15 N -0.88 -24.13 11.30 55.43 0.63 -23.51 16 16 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 20 C -0.11 -2.51 5.07 -26.73 -0.14 -2.64 16 21 C -0.14 -2.66 9.80 37.16 0.36 -2.29 16 22 C 0.02 0.32 5.00 -3.71 -0.02 0.31 16 23 C 0.07 1.03 7.01 37.21 0.26 1.29 16 24 O -0.37 -6.73 10.01 -55.11 -0.55 -7.28 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.84 8.13 -51.93 -0.42 0.42 16 29 H 0.07 0.75 8.13 -51.93 -0.42 0.33 16 30 H 0.09 1.64 8.13 -51.93 -0.42 1.22 16 31 H 0.05 1.17 6.86 -51.93 -0.36 0.81 16 32 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 33 H 0.03 0.75 6.14 -51.93 -0.32 0.43 16 34 H 0.09 2.39 5.96 -51.93 -0.31 2.08 16 35 H 0.05 0.86 7.75 -51.93 -0.40 0.46 16 36 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.05 1.11 6.47 -51.93 -0.34 0.77 16 39 H 0.09 1.55 6.12 -51.93 -0.32 1.24 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 326.63 15.07 4.92 4.92 Total: -1.00 -29.25 326.63 -7.56 -36.81 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -6.55 Total: 0.67 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: 0.78 Total: -0.21 kcal Atomic # 7 Polarization: -34.73 SS G_CDS: -0.32 Total: -35.06 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: -1.37 Total: -23.06 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.25 -7.56 -36.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172513.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.754 kcal (2) G-P(sol) polarization free energy of solvation -29.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds