Wall clock time and date at job start Mon Mar 30 2020 01:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45198 * 109.47179 * 2 1 4 4 C 1.34231 * 116.99790 * 179.97438 * 3 2 1 5 5 O 1.20828 * 120.00119 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99868 * 180.02562 * 4 3 2 7 7 H 1.09003 * 109.50512 * 304.91219 * 6 4 3 8 8 C 1.53094 * 109.50871 * 64.99621 * 6 4 3 9 9 N 1.47008 * 109.25746 * 176.78249 * 8 6 4 10 10 C 1.46900 * 111.00128 * 177.61117 * 9 8 6 11 11 H 1.09006 * 109.47014 * 58.06738 * 10 9 8 12 12 C 1.50696 * 109.47040 * 298.07131 * 10 9 8 13 13 H 1.07996 * 120.00424 * 359.97438 * 12 10 9 14 14 C 1.37876 * 120.00200 * 179.97438 * 12 10 9 15 15 N 1.31520 * 119.99823 * 359.97438 * 14 12 10 16 16 Si 1.86802 * 120.00406 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.47449 * 180.02562 * 16 14 12 18 18 H 1.48505 * 109.46844 * 299.99813 * 16 14 12 19 19 H 1.48497 * 109.47099 * 59.99347 * 16 14 12 20 20 C 1.53001 * 109.47554 * 178.07122 * 10 9 8 21 21 C 1.53001 * 109.47104 * 59.23021 * 20 10 9 22 22 C 1.47021 * 110.75474 * 301.38542 * 9 8 6 23 23 C 1.53102 * 109.25493 * 58.62000 * 22 9 8 24 24 O 1.43018 * 109.50322 * 184.78500 * 6 4 3 25 25 H 1.08997 * 109.46894 * 60.00102 * 1 2 3 26 26 H 1.08997 * 109.47308 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47454 * 300.00090 * 1 2 3 28 28 H 1.08993 * 109.47073 * 239.99377 * 2 1 3 29 29 H 1.09004 * 109.46707 * 120.00204 * 2 1 3 30 30 H 1.09007 * 109.50445 * 56.85106 * 8 6 4 31 31 H 1.08996 * 109.51032 * 296.72544 * 8 6 4 32 32 H 0.97007 * 119.99588 * 179.97438 * 15 14 12 33 33 H 1.09000 * 109.47113 * 179.23574 * 20 10 9 34 34 H 1.09002 * 109.46702 * 299.23409 * 20 10 9 35 35 H 1.09000 * 109.46903 * 305.09811 * 21 20 10 36 36 H 1.08993 * 109.46999 * 65.09927 * 21 20 10 37 37 H 1.08996 * 109.47096 * 185.10024 * 21 20 10 38 38 H 1.08998 * 109.50296 * 178.54736 * 22 9 8 39 39 H 1.08995 * 109.50553 * 298.68398 * 22 9 8 40 40 H 1.08995 * 109.50178 * 183.21957 * 23 22 9 41 41 H 1.08990 * 109.50817 * 63.08337 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0808 0.5865 0.0015 6 6 3.9208 2.9373 0.0012 7 1 3.5168 3.4987 -0.8414 8 6 3.5521 3.6425 1.3090 9 7 4.1807 4.9711 1.3374 10 6 3.8054 5.7053 2.5532 11 1 4.1001 5.1297 3.4307 12 6 2.3138 5.9192 2.5705 13 1 1.7054 5.5474 1.7593 14 6 1.7256 6.5896 3.6219 15 7 2.4663 7.0419 4.6101 16 14 -0.1235 6.8541 3.6438 17 1 -0.5029 7.5963 4.8727 18 1 -0.5254 7.6384 2.4485 19 1 -0.8120 5.5385 3.6269 20 6 4.5151 7.0606 2.5702 21 6 4.1163 7.8608 1.3287 22 6 5.6419 4.8588 1.2198 23 6 5.9895 4.1415 -0.0873 24 8 5.3448 2.8651 -0.1108 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.9090 3.0529 2.1536 31 1 2.4693 3.7507 1.3716 32 1 2.0524 7.5139 5.3497 33 1 4.2261 7.6109 3.4656 34 1 5.5941 6.9056 2.5715 35 1 4.3226 7.2718 0.4350 36 1 3.0524 8.0936 1.3728 37 1 4.6897 8.7871 1.2937 38 1 6.0844 5.8549 1.2171 39 1 6.0321 4.2887 2.0628 40 1 7.0690 4.0051 -0.1516 41 1 5.6464 4.7382 -0.9324 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255172514.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:59 Heat of formation + Delta-G solvation = -124.129105 kcal Electronic energy + Delta-G solvation = -22272.032468 eV Core-core repulsion = 18959.490095 eV Total energy + Delta-G solvation = -3312.542373 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.52266 -38.97824 -36.60525 -35.96417 -32.87120 -32.13687 -31.23709 -30.60778 -27.81028 -25.62219 -24.65161 -23.15595 -22.78883 -21.43101 -20.27429 -19.05462 -17.60380 -16.79566 -16.52660 -16.09160 -15.70625 -15.52099 -14.74561 -14.47276 -14.25731 -13.74384 -13.63204 -13.35345 -12.89840 -12.83548 -12.65812 -12.03712 -11.93403 -11.89558 -11.61787 -11.37138 -11.01805 -10.98250 -10.88134 -10.60477 -10.51471 -10.45067 -10.13407 -9.96967 -9.88125 -9.55624 -9.19006 -8.89960 -8.44939 -7.37065 -6.05228 -4.09568 2.30818 2.44973 3.29565 3.34491 3.36986 4.14938 4.35917 4.60061 4.87409 4.91337 4.99601 5.15899 5.20391 5.28529 5.29437 5.46777 5.57640 5.61930 5.71979 5.75368 5.92798 5.95113 6.24500 6.33768 6.35905 6.46559 6.48192 6.53971 6.70113 7.03321 7.14175 7.24733 7.29497 7.55283 7.64132 7.77556 7.90191 7.99295 8.23762 8.46300 8.94365 9.54724 11.01158 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.014661 B = 0.006959 C = 0.004994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.324974 B = 4022.478619 C = 5605.761938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.063 3.937 3 O -0.350 6.350 4 C 0.475 3.525 5 O -0.496 6.496 6 C 0.104 3.896 7 H 0.102 0.898 8 C 0.044 3.956 9 N -0.524 5.524 10 C 0.218 3.782 11 H 0.000 1.000 12 C -0.500 4.500 13 H 0.063 0.937 14 C 0.062 3.938 15 N -0.892 5.892 16 Si 0.894 3.106 17 H -0.289 1.289 18 H -0.276 1.276 19 H -0.277 1.277 20 C -0.113 4.113 21 C -0.122 4.122 22 C 0.009 3.991 23 C 0.068 3.932 24 O -0.370 6.370 25 H 0.067 0.933 26 H 0.078 0.922 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.035 0.965 31 H 0.107 0.893 32 H 0.261 0.739 33 H 0.094 0.906 34 H 0.015 0.985 35 H 0.045 0.955 36 H 0.056 0.944 37 H 0.016 0.984 38 H 0.091 0.909 39 H 0.033 0.967 40 H 0.097 0.903 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.454 -7.490 -8.573 11.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.011 4.011 3 O -0.267 6.267 4 C 0.316 3.684 5 O -0.382 6.382 6 C 0.044 3.956 7 H 0.120 0.880 8 C -0.085 4.085 9 N -0.250 5.250 10 C 0.112 3.888 11 H 0.018 0.982 12 C -0.539 4.539 13 H 0.081 0.919 14 C -0.140 4.140 15 N -0.531 5.531 16 Si 0.722 3.278 17 H -0.214 1.214 18 H -0.202 1.202 19 H -0.203 1.203 20 C -0.151 4.151 21 C -0.179 4.179 22 C -0.120 4.120 23 C -0.008 4.008 24 O -0.289 6.289 25 H 0.086 0.914 26 H 0.096 0.904 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.053 0.947 31 H 0.125 0.875 32 H 0.071 0.929 33 H 0.112 0.888 34 H 0.034 0.966 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.035 0.965 38 H 0.109 0.891 39 H 0.051 0.949 40 H 0.115 0.885 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.560 -7.611 -8.799 11.648 hybrid contribution -0.721 -0.183 0.886 1.157 sum -0.161 -7.795 -7.913 11.108 Atomic orbital electron populations 1.21808 0.92500 1.02770 1.03918 1.23023 0.95441 0.80171 1.02473 1.86524 1.23809 1.32319 1.84037 1.23259 0.80740 0.91911 0.72498 1.90643 1.60433 1.42803 1.44365 1.21530 0.83295 0.89054 1.01694 0.88008 1.22460 1.02788 0.90459 0.92750 1.62401 1.05006 1.14089 1.43456 1.19309 0.95691 0.90007 0.83746 0.98222 1.20987 0.91035 1.36012 1.05855 0.91878 1.24893 0.98061 0.95601 0.95438 1.69867 1.35072 1.38291 1.09867 0.86615 0.85507 0.78332 0.77322 1.21427 1.20168 1.20292 1.21609 0.94964 0.98551 1.00004 1.21476 1.01143 0.96880 0.98435 1.22840 0.91724 1.00989 0.96457 1.22782 0.96895 0.83475 0.97679 1.87954 1.16507 1.29793 1.94636 0.91409 0.90375 0.91091 0.91364 0.91208 0.94726 0.87474 0.92876 0.88791 0.96633 0.93583 0.92501 0.96499 0.89118 0.94906 0.88526 0.92198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 10.29 37.16 0.38 -1.04 16 2 C 0.06 0.75 6.19 37.16 0.23 0.98 16 3 O -0.35 -5.36 10.21 -39.26 -0.40 -5.76 16 4 C 0.47 8.16 7.29 36.01 0.26 8.42 16 5 O -0.50 -9.60 16.26 -25.46 -0.41 -10.02 16 6 C 0.10 1.78 3.33 -27.83 -0.09 1.68 16 7 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 8 C 0.04 0.86 4.69 -3.72 -0.02 0.84 16 9 N -0.52 -10.61 3.71 -227.72 -0.85 -11.45 16 10 C 0.22 5.19 1.75 -68.87 -0.12 5.07 16 11 H 0.00 0.00 8.14 -51.93 -0.42 -0.42 16 12 C -0.50 -12.85 6.78 -34.44 -0.23 -13.08 16 13 H 0.06 1.62 6.82 -52.49 -0.36 1.26 16 14 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 15 N -0.89 -24.47 11.32 55.43 0.63 -23.85 16 16 Si 0.89 20.61 29.54 -169.99 -5.02 15.59 16 17 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 19 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 20 C -0.11 -2.56 4.96 -26.73 -0.13 -2.70 16 21 C -0.12 -2.53 9.39 37.16 0.35 -2.19 16 22 C 0.01 0.15 5.08 -3.71 -0.02 0.13 16 23 C 0.07 1.02 7.01 37.21 0.26 1.29 16 24 O -0.37 -6.54 10.01 -55.11 -0.55 -7.09 16 25 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.07 0.76 8.13 -51.93 -0.42 0.34 16 29 H 0.07 0.84 8.13 -51.93 -0.42 0.41 16 30 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.11 2.17 6.52 -51.93 -0.34 1.83 16 32 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 33 H 0.09 2.41 6.05 -51.93 -0.31 2.09 16 34 H 0.02 0.32 6.32 -51.93 -0.33 -0.01 16 35 H 0.05 0.90 7.29 -51.93 -0.38 0.53 16 36 H 0.06 1.29 7.43 -51.93 -0.39 0.90 16 37 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.09 1.53 5.99 -51.93 -0.31 1.22 16 39 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 326.84 15.07 4.93 4.93 Total: -1.00 -29.27 326.84 -7.53 -36.79 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -6.62 Total: -0.08 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: 0.77 Total: 0.94 kcal Atomic # 7 Polarization: -35.08 SS G_CDS: -0.22 Total: -35.30 kcal Atomic # 8 Polarization: -21.50 SS G_CDS: -1.37 Total: -22.87 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.27 -7.53 -36.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172514.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.335 kcal (2) G-P(sol) polarization free energy of solvation -29.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds