Wall clock time and date at job start Mon Mar 30 2020 01:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.47075 * 2 1 4 4 H 1.08995 * 109.47274 * 305.00341 * 3 2 1 5 5 C 1.50696 * 109.47240 * 185.00126 * 3 2 1 6 6 H 1.08004 * 119.99955 * 240.00017 * 5 3 2 7 7 C 1.37876 * 120.00000 * 59.99871 * 5 3 2 8 8 N 1.31509 * 119.99833 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 119.99864 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.47243 * 60.00607 * 9 7 5 11 11 H 1.48502 * 109.46989 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47406 * 300.00356 * 9 7 5 13 13 N 1.46906 * 109.46551 * 65.00320 * 3 2 1 14 14 C 1.47011 * 111.00380 * 63.58465 * 13 3 2 15 15 C 1.53094 * 109.29287 * 182.40854 * 14 13 3 16 16 O 1.43010 * 109.26369 * 303.13278 * 15 14 13 17 17 C 1.43011 * 113.73865 * 58.66714 * 16 15 14 18 18 C 1.47105 * 111.05660 * 187.20012 * 13 3 2 19 19 H 1.08999 * 109.53399 * 297.59176 * 18 13 3 20 20 C 1.53006 * 109.49337 * 57.68693 * 18 13 3 21 21 C 1.50696 * 109.46867 * 185.08614 * 20 18 13 22 22 O 1.20829 * 120.00179 * 5.69075 * 21 20 18 23 23 O 1.34230 * 119.99717 * 185.69439 * 21 20 18 24 24 C 1.45209 * 116.99753 * 180.02562 * 23 21 20 25 25 H 1.08993 * 109.47197 * 59.99697 * 1 2 3 26 26 H 1.08998 * 109.47292 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.47171 * 299.99621 * 1 2 3 28 28 H 1.08996 * 109.47430 * 240.00660 * 2 1 3 29 29 H 1.09002 * 109.47691 * 119.99976 * 2 1 3 30 30 H 0.97006 * 120.00059 * 179.97438 * 8 7 5 31 31 H 1.09002 * 109.50508 * 62.45740 * 14 13 3 32 32 H 1.08995 * 109.50436 * 302.37389 * 14 13 3 33 33 H 1.09001 * 109.50623 * 63.07022 * 15 14 13 34 34 H 1.09008 * 109.50324 * 183.19377 * 15 14 13 35 35 H 1.08999 * 109.50516 * 61.26741 * 17 16 15 36 36 H 1.09007 * 109.50831 * 181.39733 * 17 16 15 37 37 H 1.09001 * 109.46883 * 305.08291 * 20 18 13 38 38 H 1.09002 * 109.47075 * 65.08448 * 20 18 13 39 39 H 1.08998 * 109.47356 * 59.99883 * 24 23 21 40 40 H 1.09004 * 109.46656 * 179.97438 * 24 23 21 41 41 H 1.09003 * 109.46963 * 299.99543 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4444 -0.1239 6 1 4.1472 1.8890 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3376 -2.1733 9 14 6.0048 0.8815 -1.3818 10 1 6.5975 0.1474 -0.2349 11 1 6.3977 0.2180 -2.6510 12 1 6.4994 2.2817 -1.3821 13 7 1.6514 2.0992 1.2553 14 6 2.2893 1.4493 2.4094 15 6 1.8118 2.1244 3.6979 16 8 2.1050 3.5227 3.6346 17 6 1.4989 4.1883 2.5233 18 6 1.9734 3.5342 1.2229 19 1 3.0510 3.6638 1.1224 20 6 1.2670 4.1893 0.0342 21 6 1.6950 5.6302 -0.0725 22 8 2.5594 6.0592 0.6546 23 8 1.1158 6.4372 -0.9754 24 6 1.5784 7.8128 -1.0226 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8901 28 1 1.8934 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.8292 -0.0602 -2.9503 31 1 3.3721 1.5449 2.3283 32 1 2.0175 0.3940 2.4290 33 1 0.7365 1.9825 3.8061 34 1 2.3255 1.6830 4.5520 35 1 0.4145 4.1064 2.5973 36 1 1.7864 5.2397 2.5279 37 1 1.5332 3.6623 -0.8820 38 1 0.1880 4.1406 0.1810 39 1 2.6433 7.8303 -1.2546 40 1 1.0300 8.3542 -1.7936 41 1 1.4094 8.2864 -0.0555 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255174721.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:31 Heat of formation + Delta-G solvation = -125.729588 kcal Electronic energy + Delta-G solvation = -22788.882186 eV Core-core repulsion = 19476.270411 eV Total energy + Delta-G solvation = -3312.611775 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.38221 -39.02813 -36.32175 -36.06360 -33.18728 -32.07758 -30.97298 -28.74713 -27.57505 -26.61631 -25.17924 -23.08393 -22.59867 -20.70427 -20.02390 -18.89161 -17.40822 -16.57752 -16.40674 -16.15522 -15.74264 -15.51125 -14.61799 -14.37822 -14.12993 -13.85209 -13.38467 -13.19587 -12.86536 -12.71855 -12.40827 -12.06099 -11.92352 -11.54179 -11.36360 -11.24287 -11.01029 -10.88737 -10.73012 -10.63762 -10.52615 -10.33800 -10.11036 -9.73991 -9.71720 -9.54274 -9.27197 -8.85236 -8.39392 -7.27222 -6.05425 -4.18445 2.49604 2.93104 3.26322 3.30931 3.35437 4.33650 4.36387 4.79743 5.11154 5.16010 5.18518 5.23089 5.36461 5.44862 5.58058 5.62138 5.75441 5.80770 5.89638 5.94613 6.17314 6.24417 6.31660 6.41559 6.44331 6.58945 6.62271 6.69239 6.80861 7.01291 7.09057 7.23931 7.50954 7.61513 7.69342 7.84021 8.00778 8.05964 8.16737 8.36011 8.89874 9.49739 10.93844 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.012989 B = 0.008063 C = 0.006491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2155.211359 B = 3471.894986 C = 4312.525074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.112 4.112 3 C 0.208 3.792 4 H 0.046 0.954 5 C -0.547 4.547 6 H 0.057 0.943 7 C 0.071 3.929 8 N -0.884 5.884 9 Si 0.885 3.115 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.278 1.278 13 N -0.527 5.527 14 C 0.026 3.974 15 C 0.060 3.940 16 O -0.388 6.388 17 C 0.067 3.933 18 C 0.069 3.931 19 H 0.067 0.933 20 C -0.107 4.107 21 C 0.464 3.536 22 O -0.508 6.508 23 O -0.362 6.362 24 C 0.035 3.965 25 H 0.039 0.961 26 H 0.026 0.974 27 H 0.047 0.953 28 H 0.094 0.906 29 H 0.033 0.967 30 H 0.262 0.738 31 H 0.051 0.949 32 H 0.082 0.918 33 H 0.049 0.951 34 H 0.086 0.914 35 H 0.047 0.953 36 H 0.095 0.905 37 H 0.126 0.874 38 H 0.104 0.896 39 H 0.061 0.939 40 H 0.097 0.903 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.429 7.153 3.983 10.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.150 4.150 3 C 0.102 3.898 4 H 0.063 0.937 5 C -0.586 4.586 6 H 0.075 0.925 7 C -0.132 4.132 8 N -0.522 5.522 9 Si 0.713 3.287 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.203 1.203 13 N -0.253 5.253 14 C -0.102 4.102 15 C -0.017 4.017 16 O -0.307 6.307 17 C -0.010 4.010 18 C -0.040 4.040 19 H 0.085 0.915 20 C -0.144 4.144 21 C 0.308 3.692 22 O -0.395 6.395 23 O -0.279 6.279 24 C -0.059 4.059 25 H 0.059 0.941 26 H 0.045 0.955 27 H 0.066 0.934 28 H 0.112 0.888 29 H 0.052 0.948 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.100 0.900 33 H 0.067 0.933 34 H 0.104 0.896 35 H 0.065 0.935 36 H 0.113 0.887 37 H 0.144 0.856 38 H 0.122 0.878 39 H 0.080 0.920 40 H 0.115 0.885 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.551 7.258 4.196 10.639 hybrid contribution 1.968 0.028 -0.562 2.047 sum -4.583 7.286 3.634 9.343 Atomic orbital electron populations 1.21720 0.98766 0.98580 1.00572 1.21617 0.92282 0.98987 1.02144 1.19420 0.93316 0.91339 0.85713 0.93683 1.21687 0.92751 1.38439 1.05696 0.92509 1.24870 0.97822 0.94862 0.95618 1.69848 1.34917 1.38093 1.09375 0.86757 0.86207 0.78338 0.77365 1.20266 1.21213 1.20324 1.62739 1.57275 1.00120 1.05144 1.22589 0.98670 0.98955 0.90030 1.22745 0.99583 0.81502 0.97878 1.87926 1.74121 1.21439 1.47168 1.22829 0.96289 0.96610 0.85284 1.21793 0.99604 0.90267 0.92371 0.91460 1.21467 1.02857 0.86793 1.03319 1.24043 0.79138 0.89416 0.76623 1.90640 1.30158 1.76564 1.42159 1.86535 1.61907 1.23023 1.56414 1.23199 1.00741 0.79287 1.02641 0.94143 0.95515 0.93396 0.88797 0.94803 0.92757 0.93104 0.89998 0.93252 0.89588 0.93522 0.88664 0.85608 0.87795 0.92033 0.88464 0.92146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 9.80 37.16 0.36 -2.27 16 2 C -0.11 -2.49 5.12 -26.73 -0.14 -2.62 16 3 C 0.21 4.75 1.47 -68.86 -0.10 4.65 16 4 H 0.05 1.10 5.79 -51.93 -0.30 0.80 16 5 C -0.55 -14.09 7.13 -34.44 -0.25 -14.33 16 6 H 0.06 1.52 5.80 -52.48 -0.30 1.22 16 7 C 0.07 1.88 5.29 -17.82 -0.09 1.78 16 8 N -0.88 -23.85 11.29 55.43 0.63 -23.23 16 9 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 N -0.53 -10.50 3.96 -219.72 -0.87 -11.37 16 14 C 0.03 0.50 5.00 -3.71 -0.02 0.48 16 15 C 0.06 0.99 7.01 37.21 0.26 1.25 16 16 O -0.39 -7.21 10.83 -35.23 -0.38 -7.59 16 17 C 0.07 1.17 6.00 37.21 0.22 1.40 16 18 C 0.07 1.33 1.44 -67.55 -0.10 1.23 16 19 H 0.07 1.54 6.74 -51.93 -0.35 1.19 16 20 C -0.11 -1.83 5.16 -27.88 -0.14 -1.98 16 21 C 0.46 7.88 7.60 36.00 0.27 8.15 16 22 O -0.51 -9.69 13.96 -18.75 -0.26 -9.95 16 23 O -0.36 -5.38 10.57 -39.26 -0.41 -5.80 16 24 C 0.04 0.40 10.56 101.05 1.07 1.46 16 25 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.86 7.75 -51.92 -0.40 0.46 16 28 H 0.09 2.36 5.95 -51.93 -0.31 2.05 16 29 H 0.03 0.74 6.20 -51.93 -0.32 0.42 16 30 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 31 H 0.05 1.10 6.35 -51.93 -0.33 0.77 16 32 H 0.08 1.53 6.19 -51.93 -0.32 1.21 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.09 1.23 8.14 -51.92 -0.42 0.80 16 35 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.10 1.68 6.27 -51.92 -0.33 1.35 16 37 H 0.13 2.39 5.96 -51.93 -0.31 2.08 16 38 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 39 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 40 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 LS Contribution 317.62 15.07 4.79 4.79 Total: -1.00 -28.46 317.62 -6.40 -34.86 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -6.21 Total: 3.10 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: 1.35 Total: -0.80 kcal Atomic # 7 Polarization: -34.35 SS G_CDS: -0.25 Total: -34.60 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: -1.06 Total: -23.34 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -28.46 -6.40 -34.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255174721.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.870 kcal (2) G-P(sol) polarization free energy of solvation -28.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds