Wall clock time and date at job start Mon Mar 30 2020 01:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.47075 * 2 1 4 4 H 1.08995 * 109.47274 * 305.00341 * 3 2 1 5 5 C 1.50696 * 109.47240 * 185.00126 * 3 2 1 6 6 H 1.08004 * 119.99955 * 240.00017 * 5 3 2 7 7 C 1.37876 * 120.00000 * 59.99871 * 5 3 2 8 8 N 1.31509 * 119.99833 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 119.99864 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.47243 * 60.00607 * 9 7 5 11 11 H 1.48502 * 109.46989 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47406 * 300.00356 * 9 7 5 13 13 N 1.46906 * 109.46551 * 65.00320 * 3 2 1 14 14 C 1.47011 * 111.00380 * 63.58465 * 13 3 2 15 15 C 1.53094 * 109.29287 * 182.40854 * 14 13 3 16 16 O 1.43010 * 109.26369 * 303.13278 * 15 14 13 17 17 C 1.43011 * 113.73865 * 58.66714 * 16 15 14 18 18 C 1.47105 * 111.05660 * 187.20012 * 13 3 2 19 19 H 1.08999 * 109.53399 * 297.59176 * 18 13 3 20 20 C 1.53006 * 109.49337 * 57.68693 * 18 13 3 21 21 C 1.50696 * 109.46867 * 185.08614 * 20 18 13 22 22 O 1.20829 * 120.00179 * 5.69075 * 21 20 18 23 23 O 1.34230 * 119.99717 * 185.69439 * 21 20 18 24 24 C 1.45209 * 116.99753 * 180.02562 * 23 21 20 25 25 H 1.08993 * 109.47197 * 59.99697 * 1 2 3 26 26 H 1.08998 * 109.47292 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.47171 * 299.99621 * 1 2 3 28 28 H 1.08996 * 109.47430 * 240.00660 * 2 1 3 29 29 H 1.09002 * 109.47691 * 119.99976 * 2 1 3 30 30 H 0.97006 * 120.00059 * 179.97438 * 8 7 5 31 31 H 1.09002 * 109.50508 * 62.45740 * 14 13 3 32 32 H 1.08995 * 109.50436 * 302.37389 * 14 13 3 33 33 H 1.09001 * 109.50623 * 63.07022 * 15 14 13 34 34 H 1.09008 * 109.50324 * 183.19377 * 15 14 13 35 35 H 1.08999 * 109.50516 * 61.26741 * 17 16 15 36 36 H 1.09007 * 109.50831 * 181.39733 * 17 16 15 37 37 H 1.09001 * 109.46883 * 305.08291 * 20 18 13 38 38 H 1.09002 * 109.47075 * 65.08448 * 20 18 13 39 39 H 1.08998 * 109.47356 * 59.99883 * 24 23 21 40 40 H 1.09004 * 109.46656 * 179.97438 * 24 23 21 41 41 H 1.09003 * 109.46963 * 299.99543 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4444 -0.1239 6 1 4.1472 1.8890 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3376 -2.1733 9 14 6.0048 0.8815 -1.3818 10 1 6.5975 0.1474 -0.2349 11 1 6.3977 0.2180 -2.6510 12 1 6.4994 2.2817 -1.3821 13 7 1.6514 2.0992 1.2553 14 6 2.2893 1.4493 2.4094 15 6 1.8118 2.1244 3.6979 16 8 2.1050 3.5227 3.6346 17 6 1.4989 4.1883 2.5233 18 6 1.9734 3.5342 1.2229 19 1 3.0510 3.6638 1.1224 20 6 1.2670 4.1893 0.0342 21 6 1.6950 5.6302 -0.0725 22 8 2.5594 6.0592 0.6546 23 8 1.1158 6.4372 -0.9754 24 6 1.5784 7.8128 -1.0226 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8901 28 1 1.8934 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.8292 -0.0602 -2.9503 31 1 3.3721 1.5449 2.3283 32 1 2.0175 0.3940 2.4290 33 1 0.7365 1.9825 3.8061 34 1 2.3255 1.6830 4.5520 35 1 0.4145 4.1064 2.5973 36 1 1.7864 5.2397 2.5279 37 1 1.5332 3.6623 -0.8820 38 1 0.1880 4.1406 0.1810 39 1 2.6433 7.8303 -1.2546 40 1 1.0300 8.3542 -1.7936 41 1 1.4094 8.2864 -0.0555 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255174721.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:30 Heat of formation + Delta-G solvation = -144.095601 kcal Electronic energy + Delta-G solvation = -22789.678596 eV Core-core repulsion = 19476.270411 eV Total energy + Delta-G solvation = -3313.408185 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.74078 -40.49818 -37.71744 -37.57441 -34.88455 -33.82255 -32.60437 -30.07032 -29.14766 -27.87058 -26.89852 -24.70641 -24.12207 -22.08797 -21.60125 -20.60907 -18.75380 -18.30182 -17.74916 -17.57525 -17.34151 -16.88210 -16.45489 -15.85943 -15.53732 -15.31320 -15.03652 -14.76431 -14.37187 -14.01742 -13.90997 -13.61155 -13.27415 -13.10871 -12.99740 -12.82191 -12.68140 -12.60014 -12.35395 -12.16560 -12.07197 -11.77346 -11.54982 -11.50640 -11.38135 -11.13423 -11.04712 -10.44143 -10.33828 -9.04027 -8.06551 -6.25848 1.14699 1.32616 1.35192 1.41325 1.72677 2.37265 2.95889 3.12845 3.28229 3.74611 3.90892 4.07984 4.22820 4.30787 4.32642 4.34302 4.43524 4.47481 4.59485 4.67801 4.70577 4.76666 4.81477 4.85526 4.95286 5.02787 5.10303 5.19113 5.29480 5.37520 5.49261 5.50274 5.64259 5.81103 6.04523 6.16566 6.23397 6.33323 6.53660 6.72832 6.91994 7.43760 8.88335 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.012989 B = 0.008063 C = 0.006491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2155.211359 B = 3471.894986 C = 4312.525074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.108 4.108 3 C 0.214 3.786 4 H 0.030 0.970 5 C -0.552 4.552 6 H 0.038 0.962 7 C 0.031 3.969 8 N -0.901 5.901 9 Si 0.932 3.068 10 H -0.277 1.277 11 H -0.279 1.279 12 H -0.284 1.284 13 N -0.514 5.514 14 C 0.025 3.975 15 C 0.065 3.935 16 O -0.405 6.405 17 C 0.074 3.926 18 C 0.072 3.928 19 H 0.021 0.979 20 C -0.101 4.101 21 C 0.470 3.530 22 O -0.534 6.534 23 O -0.363 6.363 24 C 0.027 3.973 25 H 0.037 0.963 26 H 0.043 0.957 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.031 0.969 30 H 0.262 0.738 31 H 0.017 0.983 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.110 0.890 35 H 0.073 0.927 36 H 0.093 0.907 37 H 0.105 0.895 38 H 0.134 0.866 39 H 0.054 0.946 40 H 0.134 0.866 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.990 7.665 4.692 12.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.146 4.146 3 C 0.107 3.893 4 H 0.048 0.952 5 C -0.592 4.592 6 H 0.056 0.944 7 C -0.169 4.169 8 N -0.540 5.540 9 Si 0.759 3.241 10 H -0.202 1.202 11 H -0.204 1.204 12 H -0.210 1.210 13 N -0.239 5.239 14 C -0.103 4.103 15 C -0.011 4.011 16 O -0.323 6.323 17 C -0.003 4.003 18 C -0.038 4.038 19 H 0.039 0.961 20 C -0.139 4.139 21 C 0.314 3.686 22 O -0.424 6.424 23 O -0.279 6.279 24 C -0.066 4.066 25 H 0.056 0.944 26 H 0.062 0.938 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.050 0.950 30 H 0.072 0.928 31 H 0.035 0.965 32 H 0.105 0.895 33 H 0.090 0.910 34 H 0.128 0.872 35 H 0.091 0.909 36 H 0.111 0.889 37 H 0.123 0.877 38 H 0.152 0.848 39 H 0.073 0.927 40 H 0.153 0.847 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.122 7.776 4.900 12.266 hybrid contribution 2.470 -0.069 -0.793 2.596 sum -5.651 7.707 4.106 10.402 Atomic orbital electron populations 1.21580 0.95835 0.99922 1.01054 1.21466 0.94827 0.97840 1.00479 1.19237 0.91376 0.91972 0.86689 0.95243 1.21890 0.94523 1.37710 1.05029 0.94410 1.25404 1.00752 0.95067 0.95712 1.69939 1.35814 1.38678 1.09596 0.86033 0.82835 0.77782 0.77477 1.20208 1.20396 1.21018 1.62738 1.56516 1.00421 1.04220 1.22645 0.96680 0.99716 0.91258 1.22854 1.01167 0.80236 0.96861 1.87910 1.74691 1.22469 1.47265 1.22795 0.97541 0.96154 0.83783 1.21757 0.97254 0.90152 0.94608 0.96058 1.21351 1.04333 0.86865 1.01348 1.23885 0.78625 0.89501 0.76549 1.90632 1.31248 1.77101 1.43381 1.86511 1.61502 1.24601 1.55280 1.23568 1.01040 0.77490 1.04497 0.94356 0.93771 0.92096 0.91854 0.95022 0.92814 0.96480 0.89494 0.90988 0.87156 0.90893 0.88876 0.87705 0.84828 0.92713 0.84750 0.91357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.55 9.80 71.98 0.71 -3.84 16 2 C -0.11 -4.76 5.12 30.60 0.16 -4.61 16 3 C 0.21 9.90 1.47 44.17 0.07 9.97 16 4 H 0.03 1.48 5.79 -2.39 -0.01 1.46 16 5 C -0.55 -29.33 7.13 25.60 0.18 -29.15 16 6 H 0.04 2.12 5.80 -2.91 -0.02 2.10 16 7 C 0.03 1.69 5.29 84.66 0.45 2.14 16 8 N -0.90 -49.47 11.29 21.45 0.24 -49.22 16 9 Si 0.93 43.94 29.54 68.60 2.03 45.97 16 10 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 11 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 12 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 13 N -0.51 -20.26 3.96 -849.06 -3.37 -23.63 16 14 C 0.03 0.96 5.00 86.31 0.43 1.39 16 15 C 0.07 2.00 7.01 72.01 0.50 2.51 16 16 O -0.40 -14.39 10.83 -148.98 -1.61 -16.00 16 17 C 0.07 2.49 6.00 72.01 0.43 2.92 16 18 C 0.07 2.77 1.44 44.91 0.06 2.84 16 19 H 0.02 1.02 6.74 -2.39 -0.02 1.01 16 20 C -0.10 -3.44 5.16 29.85 0.15 -3.29 16 21 C 0.47 15.72 7.60 71.23 0.54 16.26 16 22 O -0.53 -20.44 13.96 21.95 0.31 -20.13 16 23 O -0.36 -10.28 10.57 -51.41 -0.54 -10.82 16 24 C 0.03 0.56 10.56 113.37 1.20 1.75 16 25 H 0.04 1.37 8.14 -2.39 -0.02 1.36 16 26 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.06 2.02 7.75 -2.38 -0.02 2.00 16 28 H 0.06 3.22 5.95 -2.39 -0.01 3.21 16 29 H 0.03 1.37 6.20 -2.39 -0.01 1.36 16 30 H 0.26 13.88 8.31 -92.70 -0.77 13.11 16 31 H 0.02 0.75 6.35 -2.39 -0.02 0.74 16 32 H 0.09 3.16 6.19 -2.39 -0.01 3.15 16 33 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.11 2.85 8.14 -2.38 -0.02 2.83 16 35 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.09 3.19 6.27 -2.38 -0.01 3.17 16 37 H 0.11 4.06 5.96 -2.39 -0.01 4.05 16 38 H 0.13 3.69 8.14 -2.39 -0.02 3.67 16 39 H 0.05 1.21 8.13 -2.39 -0.02 1.19 16 40 H 0.13 1.75 8.14 -2.38 -0.02 1.74 16 41 H 0.07 1.32 8.13 -2.39 -0.02 1.30 16 Total: -1.00 -62.22 317.62 2.96 -59.26 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: 1.02 Total: 15.67 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: 4.88 Total: -1.10 kcal Atomic # 7 Polarization: -69.73 SS G_CDS: -3.12 Total: -72.85 kcal Atomic # 8 Polarization: -45.10 SS G_CDS: -1.85 Total: -46.95 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -62.22 2.96 -59.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255174721.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.833 kcal (2) G-P(sol) polarization free energy of solvation -62.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds