Wall clock time and date at job start Mon Mar 30 2020 01:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47066 * 2 1 4 4 H 1.09004 * 109.46570 * 305.09404 * 3 2 1 5 5 C 1.50696 * 109.47008 * 185.09836 * 3 2 1 6 6 H 1.08003 * 119.99738 * 239.99926 * 5 3 2 7 7 C 1.37878 * 120.00629 * 59.99383 * 5 3 2 8 8 N 1.31506 * 120.00402 * 179.72233 * 7 5 3 9 9 Si 1.86806 * 119.99696 * 0.02562 * 7 5 3 10 10 H 1.48504 * 109.46803 * 269.72430 * 9 7 5 11 11 H 1.48500 * 109.47107 * 29.71928 * 9 7 5 12 12 H 1.48489 * 109.47458 * 149.72263 * 9 7 5 13 13 N 1.46898 * 109.47465 * 65.09310 * 3 2 1 14 14 C 1.44017 * 110.99568 * 68.86489 * 13 3 2 15 15 C 1.54623 * 112.48029 * 217.17303 * 14 13 3 16 16 C 1.54571 * 110.90864 * 319.61518 * 15 14 13 17 17 O 1.39910 * 113.22076 * 319.28595 * 16 15 14 18 18 C 1.44514 * 112.81099 * 94.89601 * 17 16 15 19 19 H 1.08999 * 109.11270 * 40.91966 * 18 17 16 20 20 C 1.50696 * 109.11650 * 159.98068 * 18 17 16 21 21 O 1.20826 * 119.99930 * 6.80739 * 20 18 17 22 22 O 1.34227 * 120.00240 * 186.81473 * 20 18 17 23 23 C 1.45206 * 117.00264 * 179.97438 * 22 20 18 24 24 C 1.46265 * 111.30994 * 280.45325 * 18 17 16 25 25 H 1.09003 * 109.47167 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47056 * 300.00175 * 1 2 3 27 27 H 1.08995 * 109.47070 * 60.00278 * 1 2 3 28 28 H 1.08994 * 109.47443 * 239.99845 * 2 1 3 29 29 H 1.09009 * 109.47157 * 119.99580 * 2 1 3 30 30 H 0.97005 * 120.00266 * 180.27440 * 8 7 5 31 31 H 1.08993 * 108.88385 * 337.94698 * 14 13 3 32 32 H 1.08998 * 108.87484 * 96.40473 * 14 13 3 33 33 H 1.08998 * 109.18810 * 199.24698 * 15 14 13 34 34 H 1.09002 * 109.14897 * 79.95930 * 15 14 13 35 35 H 1.09001 * 108.73421 * 198.32127 * 16 15 14 36 36 H 1.08995 * 108.63663 * 80.17924 * 16 15 14 37 37 H 1.09004 * 109.47126 * 59.99318 * 23 22 20 38 38 H 1.08994 * 109.47596 * 179.97438 * 23 22 20 39 39 H 1.09003 * 109.46925 * 299.99889 * 23 22 20 40 40 H 1.08997 * 108.91512 * 298.75728 * 24 18 17 41 41 H 1.08998 * 108.83890 * 180.16380 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6040 1.9820 -0.8409 5 6 3.5416 1.4444 -0.1263 6 1 4.1482 1.8885 0.6492 7 6 4.1413 0.8790 -1.2316 8 7 5.4516 0.8855 -1.3443 9 14 3.0923 0.1113 -2.5731 10 1 2.8765 -1.3265 -2.2707 11 1 1.7814 0.8062 -2.6349 12 1 3.7849 0.2437 -3.8799 13 7 1.6533 2.0987 1.2561 14 6 2.3734 1.5418 2.3721 15 6 1.5038 1.4428 3.6468 16 6 0.6150 2.6973 3.8070 17 8 1.2770 3.8871 3.4855 18 6 1.0514 4.3025 2.1198 19 1 0.0052 4.1347 1.8640 20 6 1.3589 5.7724 1.9939 21 8 1.8453 6.3698 2.9247 22 8 1.0924 6.4180 0.8476 23 6 1.4142 7.8331 0.7979 24 6 1.8975 3.5548 1.1901 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 5.8733 0.4913 -2.1239 31 1 2.7219 0.5443 2.1047 32 1 3.2382 2.1708 2.5831 33 1 2.1532 1.3503 4.5173 34 1 0.8684 0.5598 3.5785 35 1 0.2737 2.7549 4.8406 36 1 -0.2540 2.5937 3.1573 37 1 2.4820 7.9691 0.9693 38 1 1.1501 8.2316 -0.1816 39 1 0.8524 8.3608 1.5687 40 1 2.9429 3.7490 1.4295 41 1 1.6975 3.9010 0.1761 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255176351.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:13 Heat of formation + Delta-G solvation = -131.609777 kcal Electronic energy + Delta-G solvation = -22741.015873 eV Core-core repulsion = 19428.149113 eV Total energy + Delta-G solvation = -3312.866759 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.93683 -40.49186 -38.41280 -37.46061 -34.85738 -34.04654 -33.66447 -30.66571 -28.92549 -28.00249 -27.04589 -24.86119 -23.54463 -22.39440 -21.99389 -20.78017 -19.05309 -18.61365 -18.31237 -17.73174 -17.34883 -16.93892 -16.51990 -16.19668 -15.60333 -15.36228 -14.92962 -14.53285 -14.34680 -14.27864 -14.14909 -13.68502 -13.51769 -13.39982 -13.08772 -12.99802 -12.64505 -12.63003 -12.12608 -12.06221 -11.99298 -11.85150 -11.57551 -11.38079 -11.34333 -11.22709 -11.16028 -10.69587 -10.58052 -9.16266 -8.32220 -6.38073 0.97744 1.31659 1.35497 1.36984 1.47467 2.30659 2.86040 3.03867 3.11680 3.77725 3.88512 4.04052 4.14454 4.18673 4.28440 4.31622 4.34617 4.44561 4.46816 4.53679 4.65975 4.69033 4.71119 4.83688 4.92115 5.01634 5.07877 5.15190 5.20549 5.23832 5.27213 5.36630 5.46811 5.51231 5.65664 6.07385 6.16569 6.33219 6.35948 6.61326 6.70381 7.30447 8.84438 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.017534 B = 0.006905 C = 0.005830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.552293 B = 4054.068969 C = 4801.208904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.120 4.120 3 C 0.185 3.815 4 H 0.041 0.959 5 C -0.543 4.543 6 H 0.029 0.971 7 C 0.015 3.985 8 N -0.949 5.949 9 Si 0.950 3.050 10 H -0.267 1.267 11 H -0.237 1.237 12 H -0.304 1.304 13 N -0.493 5.493 14 C 0.065 3.935 15 C -0.133 4.133 16 C 0.065 3.935 17 O -0.373 6.373 18 C 0.117 3.883 19 H 0.135 0.865 20 C 0.470 3.530 21 O -0.522 6.522 22 O -0.356 6.356 23 C 0.027 3.973 24 C 0.041 3.959 25 H 0.056 0.944 26 H 0.074 0.926 27 H 0.047 0.953 28 H 0.035 0.965 29 H 0.057 0.943 30 H 0.264 0.736 31 H 0.058 0.942 32 H 0.000 1.000 33 H 0.065 0.935 34 H 0.092 0.908 35 H 0.102 0.898 36 H 0.075 0.925 37 H 0.055 0.945 38 H 0.137 0.863 39 H 0.071 0.929 40 H 0.013 0.987 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.370 5.376 4.549 16.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.158 4.158 3 C 0.077 3.923 4 H 0.059 0.941 5 C -0.582 4.582 6 H 0.047 0.953 7 C -0.183 4.183 8 N -0.589 5.589 9 Si 0.777 3.223 10 H -0.193 1.193 11 H -0.160 1.160 12 H -0.232 1.232 13 N -0.215 5.215 14 C -0.065 4.065 15 C -0.171 4.171 16 C -0.012 4.012 17 O -0.292 6.292 18 C 0.058 3.942 19 H 0.152 0.848 20 C 0.313 3.687 21 O -0.410 6.410 22 O -0.272 6.272 23 C -0.065 4.065 24 C -0.088 4.088 25 H 0.075 0.925 26 H 0.093 0.907 27 H 0.066 0.934 28 H 0.053 0.947 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.018 0.982 33 H 0.084 0.916 34 H 0.111 0.889 35 H 0.120 0.880 36 H 0.094 0.906 37 H 0.074 0.926 38 H 0.156 0.844 39 H 0.090 0.910 40 H 0.031 0.969 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -15.487 5.571 4.920 17.178 hybrid contribution 1.814 -0.185 -0.925 2.045 sum -13.673 5.386 3.995 15.229 Atomic orbital electron populations 1.21661 0.93785 1.01290 1.02483 1.21843 0.97151 0.96829 0.99990 1.19791 0.91445 0.92538 0.88491 0.94072 1.21918 0.92885 1.37683 1.05728 0.95291 1.25885 0.95770 0.96083 1.00578 1.70080 1.11216 1.46998 1.30629 0.85834 0.79830 0.79597 0.77074 1.19303 1.16027 1.23238 1.61882 1.55086 1.00690 1.03852 1.21743 0.94103 0.99147 0.91479 1.22716 0.99288 0.99385 0.95737 1.22447 0.94421 0.82582 1.01707 1.87786 1.74413 1.41562 1.25474 1.20571 1.02967 0.85924 0.84689 0.84812 1.23542 0.74327 0.90438 0.80430 1.90638 1.40528 1.69156 1.40644 1.86497 1.76768 1.27236 1.36682 1.23636 1.01559 0.75519 1.05810 1.21283 0.96989 0.90824 0.99732 0.92503 0.90721 0.93392 0.94719 0.92482 0.92676 0.92371 0.98189 0.91606 0.88939 0.88017 0.90648 0.92578 0.84448 0.91019 0.96860 0.89115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.94 9.80 71.98 0.71 -3.24 16 2 C -0.12 -4.63 4.84 30.59 0.15 -4.48 16 3 C 0.19 7.99 1.24 44.17 0.05 8.04 16 4 H 0.04 1.80 6.83 -2.38 -0.02 1.78 16 5 C -0.54 -29.73 7.74 25.60 0.20 -29.53 16 6 H 0.03 1.82 6.82 -2.91 -0.02 1.80 16 7 C 0.01 0.84 5.45 84.66 0.46 1.30 16 8 N -0.95 -59.01 13.96 21.45 0.30 -58.71 16 9 Si 0.95 43.47 24.41 68.60 1.67 45.14 16 10 H -0.27 -11.67 6.84 99.48 0.68 -10.99 16 11 H -0.24 -9.75 6.52 99.48 0.65 -9.11 16 12 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 13 N -0.49 -18.32 3.67 -889.67 -3.26 -21.58 16 14 C 0.06 2.47 3.87 87.39 0.34 2.81 16 15 C -0.13 -3.68 6.52 31.68 0.21 -3.48 16 16 C 0.07 1.64 6.20 72.52 0.45 2.09 16 17 O -0.37 -12.24 9.55 -120.87 -1.15 -13.39 16 18 C 0.12 3.62 2.82 27.77 0.08 3.70 16 19 H 0.13 3.24 7.46 -2.39 -0.02 3.22 16 20 C 0.47 15.21 7.22 71.23 0.51 15.72 16 21 O -0.52 -19.79 16.24 28.38 0.46 -19.33 16 22 O -0.36 -9.73 10.45 -51.39 -0.54 -10.27 16 23 C 0.03 0.55 10.56 113.37 1.20 1.74 16 24 C 0.04 1.50 3.85 84.06 0.32 1.82 16 25 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.07 1.99 7.76 -2.39 -0.02 1.97 16 27 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.03 1.43 3.22 -2.39 -0.01 1.43 16 29 H 0.06 2.21 6.39 -2.38 -0.02 2.19 16 30 H 0.26 15.46 8.31 -92.70 -0.77 14.69 16 31 H 0.06 2.43 5.52 -2.39 -0.01 2.42 16 32 H 0.00 -0.02 6.67 -2.39 -0.02 -0.03 16 33 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.08 1.63 7.24 -2.39 -0.02 1.61 16 37 H 0.06 1.21 8.13 -2.39 -0.02 1.19 16 38 H 0.14 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.07 1.30 8.13 -2.39 -0.02 1.28 16 40 H 0.01 0.59 7.10 -2.39 -0.02 0.57 16 41 H 0.09 3.29 7.51 -2.39 -0.02 3.27 16 Total: -1.00 -70.48 314.82 3.09 -67.39 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: 0.93 Total: 14.26 kcal Atomic # 6 Polarization: -8.18 SS G_CDS: 4.67 Total: -3.51 kcal Atomic # 7 Polarization: -77.32 SS G_CDS: -2.96 Total: -80.29 kcal Atomic # 8 Polarization: -41.76 SS G_CDS: -1.23 Total: -42.99 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 1.67 Total: 45.14 kcal Total: -70.48 3.09 -67.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255176351.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.223 kcal (2) G-P(sol) polarization free energy of solvation -70.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds