Wall clock time and date at job start Mon Mar 30 2020 01:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47139 * 2 1 4 4 H 1.09002 * 109.46847 * 304.92423 * 3 2 1 5 5 C 1.50693 * 109.47528 * 184.92249 * 3 2 1 6 6 H 1.08003 * 120.00484 * 239.99942 * 5 3 2 7 7 C 1.37880 * 119.99880 * 59.99639 * 5 3 2 8 8 N 1.31508 * 120.00253 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99852 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47459 * 60.00162 * 9 7 5 11 11 H 1.48508 * 109.47097 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47498 * 300.00037 * 9 7 5 13 13 N 1.46897 * 109.47035 * 64.91965 * 3 2 1 14 14 C 1.47907 * 110.99957 * 181.72372 * 13 3 2 15 15 C 1.54000 * 107.05632 * 214.15864 * 14 13 3 16 16 C 1.54597 * 105.13891 * 1.22247 * 15 14 13 17 17 H 1.09001 * 110.72423 * 263.42045 * 16 15 14 18 18 O 1.42896 * 110.72119 * 140.31743 * 16 15 14 19 19 C 1.42902 * 114.00319 * 91.45216 * 18 16 15 20 20 C 1.50693 * 109.47503 * 180.02562 * 19 18 16 21 21 O 1.20829 * 120.00052 * 359.97438 * 20 19 18 22 22 O 1.34231 * 120.00304 * 180.02562 * 20 19 18 23 23 C 1.45200 * 117.00345 * 180.02562 * 22 20 19 24 24 C 1.48534 * 110.99832 * 64.33034 * 13 3 2 25 25 H 1.08993 * 109.47265 * 304.73478 * 1 2 3 26 26 H 1.08996 * 109.47201 * 64.73779 * 1 2 3 27 27 H 1.09002 * 109.46387 * 184.73547 * 1 2 3 28 28 H 1.09005 * 109.47803 * 239.99932 * 2 1 3 29 29 H 1.09002 * 109.47389 * 119.99656 * 2 1 3 30 30 H 0.96998 * 120.00616 * 180.02562 * 8 7 5 31 31 H 1.09002 * 109.91607 * 333.50485 * 14 13 3 32 32 H 1.08995 * 109.91869 * 94.80559 * 14 13 3 33 33 H 1.08999 * 110.30532 * 120.13951 * 15 14 13 34 34 H 1.09005 * 110.30525 * 242.30434 * 15 14 13 35 35 H 1.09001 * 109.47072 * 300.00350 * 19 18 16 36 36 H 1.09004 * 109.47024 * 59.99896 * 19 18 16 37 37 H 1.08996 * 109.47116 * 179.97438 * 23 22 20 38 38 H 1.09006 * 109.46421 * 299.99290 * 23 22 20 39 39 H 1.09000 * 109.46893 * 59.99263 * 23 22 20 40 40 H 1.09004 * 110.66319 * 278.14749 * 24 13 3 41 41 H 1.08991 * 110.66967 * 41.27997 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6064 1.9811 -0.8426 5 6 3.5420 1.4444 -0.1219 6 1 4.1463 1.8893 0.6548 7 6 4.1448 0.8779 -1.2250 8 7 3.4090 0.3365 -2.1710 9 14 6.0067 0.8796 -1.3758 10 1 6.5970 0.1454 -0.2279 11 1 6.4012 0.2157 -2.6443 12 1 6.5022 2.2795 -1.3755 13 7 1.6497 2.0998 1.2544 14 6 2.0910 3.5114 1.2727 15 6 2.4563 3.8516 2.7296 16 6 2.2249 2.5432 3.5199 17 1 1.2421 2.5460 3.9913 18 8 3.2513 2.3538 4.4959 19 6 2.9425 2.9035 5.7783 20 6 4.0880 2.6479 6.7235 21 8 5.0681 2.0553 6.3387 22 8 4.0191 3.0775 7.9934 23 6 5.1594 2.7965 8.8472 24 6 2.3067 1.4550 2.4200 25 1 -0.3633 0.5855 0.8445 26 1 -0.3633 0.4385 -0.9293 27 1 -0.3632 -1.0242 0.0848 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8330 -0.0623 -2.9469 31 1 2.9643 3.6358 0.6323 32 1 1.2822 4.1578 0.9321 33 1 3.5012 4.1545 2.7967 34 1 1.8074 4.6418 3.1076 35 1 2.7823 3.9775 5.6843 36 1 2.0387 2.4340 6.1668 37 1 4.9744 3.1971 9.8439 38 1 5.3089 1.7186 8.9105 39 1 6.0508 3.2631 8.4280 40 1 1.7619 0.5607 2.7225 41 1 3.3453 1.2155 2.1923 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255177397.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:09 Heat of formation + Delta-G solvation = -122.138030 kcal Electronic energy + Delta-G solvation = -21633.794072 eV Core-core repulsion = 18321.338038 eV Total energy + Delta-G solvation = -3312.456034 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.54936 -38.93697 -37.11701 -36.28651 -33.74010 -31.58035 -29.91432 -29.01762 -27.91060 -26.67064 -25.90064 -23.07554 -21.38589 -21.18414 -20.27949 -18.99569 -17.78567 -17.11428 -16.85525 -16.48315 -16.26067 -15.37096 -14.85432 -14.47570 -14.08074 -13.63329 -13.26086 -13.16743 -12.90709 -12.78081 -12.50550 -12.28653 -12.03660 -11.51810 -11.48483 -11.17337 -11.00213 -10.96224 -10.79092 -10.69059 -10.57058 -10.44411 -10.06512 -9.97056 -9.65944 -9.47266 -9.41017 -9.06313 -8.34102 -7.25074 -5.98151 -4.10519 2.07513 2.22750 3.32102 3.36279 3.41297 3.95369 4.42677 4.61961 4.87758 4.90801 4.95797 4.98947 5.11843 5.21790 5.27462 5.28271 5.38270 5.47176 5.75674 6.10181 6.15153 6.24558 6.34555 6.48294 6.56392 6.57200 6.68867 6.72432 6.83398 7.05930 7.17428 7.23853 7.35489 7.59715 7.65542 7.76241 7.92760 8.13663 8.20771 8.43319 8.98388 9.56634 11.01770 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.019197 B = 0.004754 C = 0.004169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.240079 B = 5888.576980 C = 6714.060343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.111 4.111 3 C 0.206 3.794 4 H 0.041 0.959 5 C -0.545 4.545 6 H 0.059 0.941 7 C 0.070 3.930 8 N -0.885 5.885 9 Si 0.886 3.114 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.278 1.278 13 N -0.512 5.512 14 C 0.039 3.961 15 C -0.152 4.152 16 C 0.082 3.918 17 H 0.072 0.928 18 O -0.357 6.357 19 C 0.073 3.927 20 C 0.458 3.542 21 O -0.482 6.482 22 O -0.362 6.362 23 C 0.037 3.963 24 C 0.048 3.952 25 H 0.049 0.951 26 H 0.038 0.962 27 H 0.025 0.975 28 H 0.093 0.907 29 H 0.032 0.968 30 H 0.262 0.738 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.062 0.938 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.102 0.898 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.073 0.927 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.864 5.994 16.758 18.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.150 4.150 3 C 0.099 3.901 4 H 0.059 0.941 5 C -0.584 4.584 6 H 0.077 0.923 7 C -0.132 4.132 8 N -0.523 5.523 9 Si 0.714 3.286 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.203 1.203 13 N -0.238 5.238 14 C -0.089 4.089 15 C -0.190 4.190 16 C 0.024 3.976 17 H 0.090 0.910 18 O -0.276 6.276 19 C -0.005 4.005 20 C 0.299 3.701 21 O -0.366 6.366 22 O -0.280 6.280 23 C -0.056 4.056 24 C -0.080 4.080 25 H 0.068 0.932 26 H 0.058 0.942 27 H 0.044 0.956 28 H 0.111 0.889 29 H 0.051 0.949 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.108 0.892 36 H 0.110 0.890 37 H 0.120 0.880 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.091 0.909 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.918 5.569 16.445 17.606 hybrid contribution 1.967 0.121 -0.097 1.973 sum -0.951 5.689 16.348 17.336 Atomic orbital electron populations 1.21729 0.98861 0.98557 1.00569 1.21581 0.92237 0.99050 1.02094 1.19408 0.93238 0.91393 0.86014 0.94112 1.21691 0.92681 1.38403 1.05628 0.92256 1.24884 0.97834 0.94906 0.95610 1.69859 1.34934 1.38111 1.09424 0.86748 0.86186 0.78305 0.77369 1.20174 1.21252 1.20346 1.65165 1.53060 1.01115 1.04420 1.22659 0.99942 0.91937 0.94393 1.22921 1.01783 0.97160 0.97157 1.23328 0.89196 0.96713 0.88383 0.90994 1.88047 1.43251 1.78573 1.17696 1.21643 0.93554 1.00643 0.84689 1.23437 0.88611 0.76343 0.81699 1.90727 1.32685 1.36637 1.76580 1.86451 1.45202 1.73837 1.22496 1.23269 0.87213 1.02159 0.93008 1.23051 1.00897 0.95016 0.89048 0.93230 0.94245 0.95560 0.88914 0.94942 0.92822 0.91732 0.91999 0.91020 0.91964 0.89153 0.89009 0.87992 0.91774 0.91807 0.90877 0.90729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 9.85 37.16 0.37 -2.46 16 2 C -0.11 -2.63 5.17 -26.73 -0.14 -2.77 16 3 C 0.21 5.03 1.78 -68.87 -0.12 4.91 16 4 H 0.04 1.10 8.14 -51.93 -0.42 0.68 16 5 C -0.55 -14.55 6.36 -34.44 -0.22 -14.77 16 6 H 0.06 1.61 6.02 -52.48 -0.32 1.30 16 7 C 0.07 1.92 5.29 -17.82 -0.09 1.83 16 8 N -0.89 -24.87 11.29 55.43 0.63 -24.25 16 9 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 N -0.51 -10.67 4.66 -223.88 -1.04 -11.72 16 14 C 0.04 0.74 6.35 -2.75 -0.02 0.73 16 15 C -0.15 -2.40 6.69 -25.37 -0.17 -2.57 16 16 C 0.08 1.31 3.51 -24.87 -0.09 1.22 16 17 H 0.07 0.98 7.88 -51.93 -0.41 0.57 16 18 O -0.36 -5.91 9.61 -55.18 -0.53 -6.44 16 19 C 0.07 0.86 6.40 36.00 0.23 1.09 16 20 C 0.46 6.17 8.03 36.00 0.29 6.46 16 21 O -0.48 -8.46 16.25 -25.48 -0.41 -8.88 16 22 O -0.36 -3.94 10.57 -39.26 -0.41 -4.35 16 23 C 0.04 0.30 10.56 101.05 1.07 1.37 16 24 C 0.05 0.95 5.07 -1.90 -0.01 0.94 16 25 H 0.05 0.96 7.62 -51.93 -0.40 0.56 16 26 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.09 2.46 5.95 -51.93 -0.31 2.15 16 29 H 0.03 0.76 6.82 -51.93 -0.35 0.40 16 30 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 31 H 0.06 1.39 6.42 -51.93 -0.33 1.06 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.07 1.18 8.07 -51.93 -0.42 0.76 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.09 0.84 8.11 -51.93 -0.42 0.42 16 37 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 39 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 40 H 0.07 1.40 7.57 -51.93 -0.39 1.01 16 41 H 0.07 1.73 5.94 -51.93 -0.31 1.42 16 LS Contribution 330.29 15.07 4.98 4.98 Total: -1.00 -30.78 330.29 -7.32 -38.11 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -6.60 Total: 0.07 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: 1.09 Total: -4.02 kcal Atomic # 7 Polarization: -35.55 SS G_CDS: -0.42 Total: -35.97 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: -1.36 Total: -19.66 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.78 -7.32 -38.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255177397.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.032 kcal (2) G-P(sol) polarization free energy of solvation -30.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds