Wall clock time and date at job start Mon Mar 30 2020 01:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52986 * 109.47370 * 2 1 4 4 H 1.08998 * 109.47583 * 55.00007 * 3 2 1 5 5 C 1.50704 * 109.47513 * 174.99876 * 3 2 1 6 6 H 1.08008 * 119.99727 * 119.99408 * 5 3 2 7 7 C 1.37875 * 120.00100 * 300.00700 * 5 3 2 8 8 N 1.31509 * 119.99863 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 120.00111 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46947 * 59.99164 * 9 7 5 11 11 H 1.48495 * 109.47040 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.46885 * 299.99744 * 9 7 5 13 13 N 1.46903 * 109.47179 * 295.00169 * 3 2 1 14 14 C 1.48553 * 110.99932 * 295.12605 * 13 3 2 15 15 C 1.54379 * 104.59596 * 200.96259 * 14 13 3 16 16 C 1.54257 * 105.06275 * 23.84866 * 15 14 13 17 17 H 1.08996 * 110.32711 * 241.00868 * 16 15 14 18 18 O 1.42899 * 110.32425 * 118.89797 * 16 15 14 19 19 C 1.42905 * 113.99778 * 91.45476 * 18 16 15 20 20 C 1.50699 * 109.46972 * 180.02562 * 19 18 16 21 21 O 1.20828 * 120.00000 * 0.02562 * 20 19 18 22 22 O 1.34231 * 120.00154 * 180.02562 * 20 19 18 23 23 C 1.45196 * 117.00262 * 180.02562 * 22 20 19 24 24 C 1.48559 * 111.00025 * 179.70810 * 13 3 2 25 25 H 1.08998 * 109.47268 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.46972 * 299.99655 * 1 2 3 27 27 H 1.08992 * 109.47183 * 59.99981 * 1 2 3 28 28 H 1.09004 * 109.46591 * 239.99695 * 2 1 3 29 29 H 1.09002 * 109.47074 * 120.00099 * 2 1 3 30 30 H 0.97004 * 120.00287 * 180.02562 * 8 7 5 31 31 H 1.09002 * 110.41282 * 82.17881 * 14 13 3 32 32 H 1.09008 * 110.41033 * 319.73608 * 14 13 3 33 33 H 1.09004 * 110.31954 * 264.95275 * 15 14 13 34 34 H 1.08996 * 110.32939 * 142.75197 * 15 14 13 35 35 H 1.09000 * 109.47187 * 300.00233 * 19 18 16 36 36 H 1.09001 * 109.46558 * 60.00281 * 19 18 16 37 37 H 1.09001 * 109.46943 * 59.99499 * 23 22 20 38 38 H 1.08994 * 109.47299 * 180.02562 * 23 22 20 39 39 H 1.09003 * 109.46752 * 299.99695 * 23 22 20 40 40 H 1.09001 * 110.41426 * 40.25714 * 24 13 3 41 41 H 1.08999 * 110.41448 * 277.81778 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4423 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4442 0.1239 6 1 4.1473 1.8887 -0.6524 7 6 4.1433 0.8782 1.2279 8 7 3.4063 0.3372 2.1732 9 14 6.0051 0.8798 1.3811 10 1 6.5005 2.2798 1.3807 11 1 6.3979 0.2165 2.6503 12 1 6.5967 0.1451 0.2342 13 7 1.6514 2.0992 -1.2552 14 6 2.3201 1.4620 -2.4187 15 6 2.2692 2.5318 -3.5306 16 6 2.1405 3.8771 -2.7869 17 1 1.2122 4.3762 -3.0649 18 8 3.2604 4.7151 -3.0793 19 6 3.0615 5.5816 -4.1981 20 6 4.2988 6.4142 -4.4148 21 8 5.2532 6.2790 -3.6863 22 8 4.3407 7.3059 -5.4172 23 6 5.5646 8.0725 -5.5669 24 6 2.1246 3.5070 -1.2882 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.8293 -0.0607 2.9501 31 1 1.7778 0.5679 -2.7262 32 1 3.3538 1.2159 -2.1752 33 1 1.4032 2.3697 -4.1724 34 1 3.1865 2.5106 -4.1188 35 1 2.8646 4.9853 -5.0890 36 1 2.2120 6.2363 -4.0039 37 1 6.3991 7.3939 -5.7436 38 1 5.4653 8.7545 -6.4114 39 1 5.7482 8.6451 -4.6577 40 1 3.1276 3.5809 -0.8677 41 1 1.4351 4.1527 -0.7444 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255177398.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:11 Heat of formation + Delta-G solvation = -121.719889 kcal Electronic energy + Delta-G solvation = -21635.512963 eV Core-core repulsion = 18323.075061 eV Total energy + Delta-G solvation = -3312.437902 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.53868 -38.94923 -37.08980 -36.27734 -33.68672 -31.54724 -29.82945 -29.25764 -27.79962 -26.63215 -25.85193 -23.11056 -21.47557 -21.08049 -20.34394 -18.95026 -17.70921 -17.14407 -16.85461 -16.47604 -16.22779 -15.30155 -14.89792 -14.39330 -14.13888 -13.76962 -13.32506 -13.14664 -12.90489 -12.62147 -12.35815 -12.21270 -12.04351 -11.56974 -11.52148 -11.17298 -10.98919 -10.90248 -10.78607 -10.59285 -10.53594 -10.43712 -10.12947 -9.91460 -9.67506 -9.58361 -9.33089 -9.08562 -8.32549 -7.26852 -5.96881 -4.08950 2.08981 2.24053 3.33643 3.37395 3.42912 3.97021 4.44300 4.62949 4.88870 4.92345 4.96089 5.00309 5.17108 5.20664 5.28445 5.29377 5.34358 5.46176 5.84786 6.13316 6.16457 6.24991 6.34171 6.47022 6.52739 6.57144 6.68048 6.71994 6.88125 7.04578 7.16383 7.23746 7.35683 7.60299 7.67206 7.76410 7.93567 8.14099 8.19176 8.44055 8.99921 9.58206 11.03211 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.019029 B = 0.004924 C = 0.004092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.071839 B = 5685.175999 C = 6841.382239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.110 4.110 3 C 0.204 3.796 4 H 0.040 0.960 5 C -0.545 4.545 6 H 0.061 0.939 7 C 0.070 3.930 8 N -0.886 5.886 9 Si 0.886 3.114 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.278 1.278 13 N -0.506 5.506 14 C 0.037 3.963 15 C -0.149 4.149 16 C 0.085 3.915 17 H 0.068 0.932 18 O -0.358 6.358 19 C 0.072 3.928 20 C 0.457 3.543 21 O -0.481 6.481 22 O -0.363 6.363 23 C 0.037 3.963 24 C 0.040 3.960 25 H 0.025 0.975 26 H 0.039 0.961 27 H 0.047 0.953 28 H 0.031 0.969 29 H 0.093 0.907 30 H 0.262 0.738 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.063 0.937 38 H 0.102 0.898 39 H 0.063 0.937 40 H 0.074 0.926 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.505 10.231 -14.419 17.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.148 4.148 3 C 0.097 3.903 4 H 0.058 0.942 5 C -0.584 4.584 6 H 0.079 0.921 7 C -0.132 4.132 8 N -0.524 5.524 9 Si 0.714 3.286 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.203 1.203 13 N -0.231 5.231 14 C -0.091 4.091 15 C -0.187 4.187 16 C 0.028 3.972 17 H 0.086 0.914 18 O -0.277 6.277 19 C -0.006 4.006 20 C 0.298 3.702 21 O -0.365 6.365 22 O -0.280 6.280 23 C -0.057 4.057 24 C -0.088 4.088 25 H 0.044 0.956 26 H 0.058 0.942 27 H 0.066 0.934 28 H 0.050 0.950 29 H 0.111 0.889 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.082 0.918 38 H 0.120 0.880 39 H 0.082 0.918 40 H 0.093 0.907 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.586 10.060 -13.913 17.363 hybrid contribution 1.975 0.087 0.096 1.979 sum -0.611 10.148 -13.818 17.154 Atomic orbital electron populations 1.21719 0.98860 0.98448 1.00575 1.21559 0.92217 0.98980 1.02036 1.19392 0.93325 0.91358 0.86247 0.94207 1.21696 0.92710 1.38275 1.05696 0.92127 1.24878 0.97819 0.94916 0.95607 1.69863 1.34905 1.38229 1.09391 0.86748 0.86203 0.78409 0.77264 1.20196 1.21274 1.20315 1.65821 1.51908 1.00488 1.04881 1.22946 0.99842 0.95977 0.90355 1.22886 1.01389 0.95725 0.98687 1.23112 0.86968 0.89720 0.97444 0.91440 1.88096 1.40037 1.52953 1.46581 1.21644 0.92690 0.93250 0.92970 1.23442 0.89750 0.78811 0.78154 1.90733 1.36996 1.64489 1.44302 1.86449 1.41580 1.49733 1.50258 1.23265 0.84603 0.94941 1.02841 1.22967 1.01713 0.92413 0.91744 0.95574 0.94173 0.93422 0.94993 0.88901 0.92852 0.91543 0.91740 0.91548 0.91300 0.89166 0.89062 0.91798 0.88002 0.91787 0.90743 0.90960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 9.80 37.16 0.36 -2.44 16 2 C -0.11 -2.58 5.18 -26.74 -0.14 -2.72 16 3 C 0.20 5.00 1.83 -68.87 -0.13 4.88 16 4 H 0.04 1.09 8.14 -51.93 -0.42 0.67 16 5 C -0.54 -14.66 6.51 -34.44 -0.22 -14.89 16 6 H 0.06 1.67 5.68 -52.48 -0.30 1.37 16 7 C 0.07 1.94 5.29 -17.82 -0.09 1.84 16 8 N -0.89 -25.01 11.29 55.43 0.63 -24.39 16 9 Si 0.89 21.71 29.54 -169.99 -5.02 16.68 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 N -0.51 -10.61 4.85 -223.41 -1.08 -11.70 16 14 C 0.04 0.72 5.31 -2.19 -0.01 0.71 16 15 C -0.15 -2.32 6.80 -25.35 -0.17 -2.49 16 16 C 0.09 1.35 3.52 -25.35 -0.09 1.26 16 17 H 0.07 0.89 7.84 -51.93 -0.41 0.48 16 18 O -0.36 -5.96 9.48 -55.18 -0.52 -6.48 16 19 C 0.07 0.86 6.38 36.01 0.23 1.09 16 20 C 0.46 6.24 8.03 36.01 0.29 6.52 16 21 O -0.48 -8.59 16.25 -25.48 -0.41 -9.00 16 22 O -0.36 -3.98 10.56 -39.26 -0.41 -4.40 16 23 C 0.04 0.31 10.56 101.05 1.07 1.37 16 24 C 0.04 0.79 6.03 -2.18 -0.01 0.78 16 25 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.04 0.81 8.14 -51.92 -0.42 0.39 16 27 H 0.05 0.92 7.75 -51.93 -0.40 0.52 16 28 H 0.03 0.74 6.84 -51.93 -0.36 0.38 16 29 H 0.09 2.46 5.95 -51.93 -0.31 2.15 16 30 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 31 H 0.07 1.23 7.58 -51.93 -0.39 0.84 16 32 H 0.06 1.43 5.87 -51.92 -0.30 1.13 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.07 1.05 7.98 -51.93 -0.41 0.64 16 35 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.09 0.84 8.10 -51.93 -0.42 0.42 16 37 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 38 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 40 H 0.07 1.72 6.20 -51.93 -0.32 1.40 16 41 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 LS Contribution 329.91 15.07 4.97 4.97 Total: -1.00 -31.12 329.91 -7.34 -38.46 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -6.57 Total: -0.06 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: 1.08 Total: -4.09 kcal Atomic # 7 Polarization: -35.63 SS G_CDS: -0.46 Total: -36.09 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: -1.35 Total: -19.89 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.12 -7.34 -38.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255177398.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.259 kcal (2) G-P(sol) polarization free energy of solvation -31.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds