Wall clock time and date at job start Mon Mar 30 2020 01:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52986 * 109.47370 * 2 1 4 4 H 1.08998 * 109.47583 * 55.00007 * 3 2 1 5 5 C 1.50704 * 109.47513 * 174.99876 * 3 2 1 6 6 H 1.08008 * 119.99727 * 119.99408 * 5 3 2 7 7 C 1.37875 * 120.00100 * 300.00700 * 5 3 2 8 8 N 1.31509 * 119.99863 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 120.00111 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46947 * 59.99164 * 9 7 5 11 11 H 1.48495 * 109.47040 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.46885 * 299.99744 * 9 7 5 13 13 N 1.46903 * 109.47179 * 295.00169 * 3 2 1 14 14 C 1.48553 * 110.99932 * 295.12605 * 13 3 2 15 15 C 1.54379 * 104.59596 * 200.96259 * 14 13 3 16 16 C 1.54257 * 105.06275 * 23.84866 * 15 14 13 17 17 H 1.08996 * 110.32711 * 241.00868 * 16 15 14 18 18 O 1.42899 * 110.32425 * 118.89797 * 16 15 14 19 19 C 1.42905 * 113.99778 * 91.45476 * 18 16 15 20 20 C 1.50699 * 109.46972 * 180.02562 * 19 18 16 21 21 O 1.20828 * 120.00000 * 0.02562 * 20 19 18 22 22 O 1.34231 * 120.00154 * 180.02562 * 20 19 18 23 23 C 1.45196 * 117.00262 * 180.02562 * 22 20 19 24 24 C 1.48559 * 111.00025 * 179.70810 * 13 3 2 25 25 H 1.08998 * 109.47268 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.46972 * 299.99655 * 1 2 3 27 27 H 1.08992 * 109.47183 * 59.99981 * 1 2 3 28 28 H 1.09004 * 109.46591 * 239.99695 * 2 1 3 29 29 H 1.09002 * 109.47074 * 120.00099 * 2 1 3 30 30 H 0.97004 * 120.00287 * 180.02562 * 8 7 5 31 31 H 1.09002 * 110.41282 * 82.17881 * 14 13 3 32 32 H 1.09008 * 110.41033 * 319.73608 * 14 13 3 33 33 H 1.09004 * 110.31954 * 264.95275 * 15 14 13 34 34 H 1.08996 * 110.32939 * 142.75197 * 15 14 13 35 35 H 1.09000 * 109.47187 * 300.00233 * 19 18 16 36 36 H 1.09001 * 109.46558 * 60.00281 * 19 18 16 37 37 H 1.09001 * 109.46943 * 59.99499 * 23 22 20 38 38 H 1.08994 * 109.47299 * 180.02562 * 23 22 20 39 39 H 1.09003 * 109.46752 * 299.99695 * 23 22 20 40 40 H 1.09001 * 110.41426 * 40.25714 * 24 13 3 41 41 H 1.08999 * 110.41448 * 277.81778 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4423 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4442 0.1239 6 1 4.1473 1.8887 -0.6524 7 6 4.1433 0.8782 1.2279 8 7 3.4063 0.3372 2.1732 9 14 6.0051 0.8798 1.3811 10 1 6.5005 2.2798 1.3807 11 1 6.3979 0.2165 2.6503 12 1 6.5967 0.1451 0.2342 13 7 1.6514 2.0992 -1.2552 14 6 2.3201 1.4620 -2.4187 15 6 2.2692 2.5318 -3.5306 16 6 2.1405 3.8771 -2.7869 17 1 1.2122 4.3762 -3.0649 18 8 3.2604 4.7151 -3.0793 19 6 3.0615 5.5816 -4.1981 20 6 4.2988 6.4142 -4.4148 21 8 5.2532 6.2790 -3.6863 22 8 4.3407 7.3059 -5.4172 23 6 5.5646 8.0725 -5.5669 24 6 2.1246 3.5070 -1.2882 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.8293 -0.0607 2.9501 31 1 1.7778 0.5679 -2.7262 32 1 3.3538 1.2159 -2.1752 33 1 1.4032 2.3697 -4.1724 34 1 3.1865 2.5106 -4.1188 35 1 2.8646 4.9853 -5.0890 36 1 2.2120 6.2363 -4.0039 37 1 6.3991 7.3939 -5.7436 38 1 5.4653 8.7545 -6.4114 39 1 5.7482 8.6451 -4.6577 40 1 3.1276 3.5809 -0.8677 41 1 1.4351 4.1527 -0.7444 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255177398.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:11 Heat of formation + Delta-G solvation = -142.512549 kcal Electronic energy + Delta-G solvation = -21636.414601 eV Core-core repulsion = 18323.075061 eV Total energy + Delta-G solvation = -3313.339539 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.55390 -40.36158 -38.41455 -37.41938 -35.45108 -33.50291 -31.16648 -30.49510 -29.10369 -28.00029 -27.31712 -24.95362 -22.91778 -22.25366 -21.70784 -20.76057 -18.75194 -18.51398 -18.14041 -17.77507 -17.47498 -16.95892 -16.21826 -15.86104 -15.43180 -15.33579 -14.78575 -14.57171 -14.20949 -14.12655 -13.89353 -13.58843 -13.23966 -13.06152 -12.93965 -12.86806 -12.65714 -12.45873 -12.28400 -12.22579 -11.86922 -11.84820 -11.65947 -11.56713 -11.46828 -11.23939 -10.98725 -10.60499 -10.43074 -9.09933 -8.07047 -6.26206 1.07504 1.33593 1.34233 1.35226 1.42718 2.37681 2.87935 3.12995 3.65527 3.73548 3.84293 3.88409 4.18198 4.22486 4.24214 4.29857 4.31898 4.57239 4.59650 4.68234 4.74537 4.76493 4.90701 4.95546 5.04429 5.10567 5.11965 5.25464 5.25684 5.31248 5.44771 5.46746 5.61574 5.77037 6.01035 6.13480 6.15577 6.32696 6.48818 6.69109 6.93176 7.42904 8.89404 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.019029 B = 0.004924 C = 0.004092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.071839 B = 5685.175999 C = 6841.382239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.104 4.104 3 C 0.210 3.790 4 H 0.005 0.995 5 C -0.550 4.550 6 H 0.047 0.953 7 C 0.026 3.974 8 N -0.908 5.908 9 Si 0.938 3.062 10 H -0.283 1.283 11 H -0.278 1.278 12 H -0.274 1.274 13 N -0.498 5.498 14 C 0.034 3.966 15 C -0.137 4.137 16 C 0.097 3.903 17 H 0.110 0.890 18 O -0.395 6.395 19 C 0.067 3.933 20 C 0.459 3.541 21 O -0.536 6.536 22 O -0.354 6.354 23 C 0.029 3.971 24 C 0.033 3.967 25 H 0.047 0.953 26 H 0.032 0.968 27 H 0.060 0.940 28 H 0.031 0.969 29 H 0.061 0.939 30 H 0.262 0.738 31 H 0.076 0.924 32 H 0.027 0.973 33 H 0.104 0.896 34 H 0.072 0.928 35 H 0.125 0.875 36 H 0.127 0.873 37 H 0.058 0.942 38 H 0.140 0.860 39 H 0.058 0.942 40 H 0.029 0.971 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.823 11.033 -16.987 20.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.143 4.143 3 C 0.102 3.898 4 H 0.023 0.977 5 C -0.589 4.589 6 H 0.065 0.935 7 C -0.174 4.174 8 N -0.547 5.547 9 Si 0.765 3.235 10 H -0.209 1.209 11 H -0.203 1.203 12 H -0.200 1.200 13 N -0.222 5.222 14 C -0.095 4.095 15 C -0.175 4.175 16 C 0.040 3.960 17 H 0.127 0.873 18 O -0.314 6.314 19 C -0.010 4.010 20 C 0.303 3.697 21 O -0.425 6.425 22 O -0.271 6.271 23 C -0.064 4.064 24 C -0.096 4.096 25 H 0.066 0.934 26 H 0.052 0.948 27 H 0.079 0.921 28 H 0.050 0.950 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.094 0.906 32 H 0.045 0.955 33 H 0.123 0.877 34 H 0.090 0.910 35 H 0.142 0.858 36 H 0.145 0.855 37 H 0.077 0.923 38 H 0.158 0.842 39 H 0.077 0.923 40 H 0.048 0.952 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.919 10.876 -16.516 20.160 hybrid contribution 2.407 -0.064 0.831 2.547 sum -1.512 10.812 -15.685 19.111 Atomic orbital electron populations 1.21578 0.95938 0.99963 1.00864 1.21394 0.94765 0.97710 1.00396 1.19148 0.91664 0.91930 0.87031 0.97730 1.21913 0.94205 1.37539 1.05225 0.93511 1.25501 1.01276 0.95033 0.95612 1.69971 1.36084 1.38928 1.09716 0.85929 0.82165 0.77907 0.77539 1.20863 1.20284 1.19985 1.65730 1.51600 1.01127 1.03790 1.22972 0.97505 0.97861 0.91125 1.22858 1.03315 0.93821 0.97524 1.22972 0.88551 0.90409 0.94086 0.87269 1.88041 1.40733 1.53881 1.48766 1.22018 0.92699 0.93507 0.92737 1.23933 0.89582 0.78593 0.77570 1.90719 1.39058 1.66316 1.46398 1.86452 1.42608 1.49115 1.48931 1.23580 0.83632 0.95024 1.04191 1.22996 0.99247 0.91945 0.95368 0.93437 0.94838 0.92069 0.95023 0.92030 0.92852 0.90582 0.95492 0.87738 0.90970 0.85792 0.85513 0.92325 0.84157 0.92294 0.95217 0.90215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.96 9.80 71.98 0.71 -4.25 16 2 C -0.10 -4.97 5.18 30.59 0.16 -4.82 16 3 C 0.21 10.63 1.83 44.16 0.08 10.71 16 4 H 0.00 0.27 8.14 -2.39 -0.02 0.25 16 5 C -0.55 -30.78 6.51 25.60 0.17 -30.62 16 6 H 0.05 2.71 5.68 -2.91 -0.02 2.69 16 7 C 0.03 1.47 5.29 84.65 0.45 1.92 16 8 N -0.91 -52.82 11.29 21.45 0.24 -52.58 16 9 Si 0.94 45.80 29.54 68.60 2.03 47.83 16 10 H -0.28 -13.99 7.11 99.48 0.71 -13.29 16 11 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 12 H -0.27 -13.17 7.11 99.48 0.71 -12.46 16 13 N -0.50 -20.80 4.85 -860.74 -4.18 -24.98 16 14 C 0.03 1.28 5.31 86.45 0.46 1.74 16 15 C -0.14 -3.86 6.80 31.49 0.21 -3.65 16 16 C 0.10 2.83 3.52 31.49 0.11 2.94 16 17 H 0.11 2.31 7.84 -2.39 -0.02 2.29 16 18 O -0.39 -12.49 9.48 -129.90 -1.23 -13.72 16 19 C 0.07 1.38 6.38 71.24 0.45 1.83 16 20 C 0.46 11.84 8.03 71.24 0.57 12.41 16 21 O -0.54 -19.32 16.25 28.39 0.46 -18.86 16 22 O -0.35 -6.99 10.56 -51.43 -0.54 -7.53 16 23 C 0.03 0.43 10.56 113.37 1.20 1.62 16 24 C 0.03 1.30 6.03 86.45 0.52 1.83 16 25 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.03 1.33 8.14 -2.38 -0.02 1.31 16 27 H 0.06 2.23 7.75 -2.39 -0.02 2.21 16 28 H 0.03 1.47 6.84 -2.38 -0.02 1.45 16 29 H 0.06 3.34 5.95 -2.39 -0.01 3.33 16 30 H 0.26 14.59 8.31 -92.71 -0.77 13.81 16 31 H 0.08 2.70 7.58 -2.39 -0.02 2.68 16 32 H 0.03 1.22 5.87 -2.38 -0.01 1.21 16 33 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.07 2.01 7.98 -2.39 -0.02 1.99 16 35 H 0.12 1.74 8.14 -2.39 -0.02 1.73 16 36 H 0.13 1.73 8.10 -2.39 -0.02 1.71 16 37 H 0.06 0.94 8.13 -2.39 -0.02 0.93 16 38 H 0.14 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.06 0.95 8.13 -2.39 -0.02 0.93 16 40 H 0.03 1.43 6.20 -2.39 -0.01 1.42 16 41 H 0.08 2.94 8.14 -2.39 -0.02 2.92 16 Total: -1.00 -71.52 329.91 2.87 -68.65 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: 1.01 Total: 9.53 kcal Atomic # 6 Polarization: -13.43 SS G_CDS: 5.09 Total: -8.34 kcal Atomic # 7 Polarization: -73.62 SS G_CDS: -3.93 Total: -77.56 kcal Atomic # 8 Polarization: -38.79 SS G_CDS: -1.31 Total: -40.11 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -71.52 2.87 -68.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255177398.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.867 kcal (2) G-P(sol) polarization free energy of solvation -71.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds