Wall clock time and date at job start Mon Mar 30 2020 01:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45202 * 109.47141 * 2 1 4 4 C 1.34230 * 116.99899 * 179.97438 * 3 2 1 5 5 O 1.20822 * 120.00217 * 0.02562 * 4 3 2 6 6 C 1.50696 * 119.99766 * 180.02562 * 4 3 2 7 7 H 1.09000 * 109.50950 * 328.53783 * 6 4 3 8 8 C 1.53094 * 109.54591 * 88.64876 * 6 4 3 9 9 O 1.43014 * 109.26369 * 176.80149 * 8 6 4 10 10 C 1.43011 * 113.73957 * 301.33369 * 9 8 6 11 11 C 1.53096 * 109.25850 * 58.66690 * 10 9 8 12 12 N 1.47012 * 109.26094 * 303.14964 * 11 10 9 13 13 C 1.46895 * 111.00355 * 182.39159 * 12 11 10 14 14 H 1.09001 * 109.47090 * 182.34385 * 13 12 11 15 15 C 1.50702 * 109.47051 * 302.34578 * 13 12 11 16 16 H 1.07999 * 120.00618 * 35.14222 * 15 13 12 17 17 C 1.37886 * 119.99934 * 215.14568 * 15 13 12 18 18 N 1.31509 * 120.00016 * 183.81653 * 17 15 13 19 19 Si 1.86797 * 119.99818 * 3.81978 * 17 15 13 20 20 H 1.48499 * 109.47322 * 84.79984 * 19 17 15 21 21 H 1.48502 * 109.46952 * 204.79862 * 19 17 15 22 22 H 1.48498 * 109.47219 * 324.79905 * 19 17 15 23 23 C 1.52994 * 109.47239 * 62.34402 * 13 12 11 24 24 C 1.53000 * 109.47270 * 63.84724 * 23 13 12 25 25 H 1.09002 * 109.46730 * 59.99697 * 1 2 3 26 26 H 1.08998 * 109.46978 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47194 * 299.99845 * 1 2 3 28 28 H 1.08997 * 109.47194 * 240.00155 * 2 1 3 29 29 H 1.08996 * 109.47282 * 119.99896 * 2 1 3 30 30 H 1.09004 * 109.51077 * 296.74448 * 8 6 4 31 31 H 1.09004 * 109.50308 * 56.86906 * 8 6 4 32 32 H 1.08998 * 109.50901 * 298.73487 * 10 9 8 33 33 H 1.09005 * 109.54410 * 178.62402 * 10 9 8 34 34 H 1.08998 * 109.50722 * 183.21657 * 11 10 9 35 35 H 1.09004 * 109.54181 * 63.10670 * 11 10 9 36 36 H 0.97000 * 119.99815 * 179.97438 * 18 17 15 37 37 H 1.09003 * 109.47600 * 183.85694 * 23 13 12 38 38 H 1.09003 * 109.47050 * 303.85140 * 23 13 12 39 39 H 1.08991 * 109.47349 * 300.00675 * 24 23 13 40 40 H 1.09004 * 109.46242 * 60.00357 * 24 23 13 41 41 H 1.08999 * 109.47052 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5867 0.0005 6 6 3.9207 2.9374 0.0012 7 1 3.2502 3.6089 -0.5351 8 6 4.0845 3.4233 1.4437 9 8 4.7001 4.7141 1.4397 10 6 5.9816 4.7389 0.8054 11 6 5.8370 4.2665 -0.6436 12 7 5.2345 2.9256 -0.6587 13 6 5.1300 2.4106 -2.0304 14 1 4.6433 1.4355 -2.0164 15 6 4.3167 3.3661 -2.8651 16 1 4.3859 4.4296 -2.6902 17 6 3.4840 2.8826 -3.8520 18 7 2.8316 3.7186 -4.6298 19 14 3.2825 1.0401 -4.0841 20 1 2.2432 0.5344 -3.1517 21 1 2.8712 0.7595 -5.4831 22 1 4.5729 0.3616 -3.8020 23 6 6.5302 2.2731 -2.6316 24 6 7.3245 1.2314 -1.8413 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.1059 3.4881 1.9193 31 1 4.7119 2.7226 1.9947 32 1 6.6642 4.0765 1.3377 33 1 6.3758 5.7551 0.8193 34 1 6.8195 4.2292 -1.1141 35 1 5.1974 4.9590 -1.1909 36 1 2.2461 3.3784 -5.3244 37 1 6.4497 1.9565 -3.6716 38 1 7.0424 3.2341 -2.5831 39 1 7.4050 1.5480 -0.8015 40 1 6.8122 0.2704 -1.8899 41 1 8.3219 1.1331 -2.2699 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255179366.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:35 Heat of formation + Delta-G solvation = -125.207475 kcal Electronic energy + Delta-G solvation = -23245.429705 eV Core-core repulsion = 19932.840570 eV Total energy + Delta-G solvation = -3312.589135 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.38280 -38.81138 -36.46011 -35.81142 -32.62911 -32.09756 -31.51232 -30.75244 -28.02723 -25.69927 -24.77331 -23.02923 -22.60799 -21.31278 -20.18745 -18.95480 -17.45757 -17.05169 -16.51443 -16.20805 -15.56522 -15.43184 -14.64171 -14.44406 -14.19016 -13.68474 -13.57543 -13.31658 -12.83582 -12.81145 -12.50759 -12.15523 -12.09232 -11.87118 -11.60598 -11.44380 -11.26652 -11.03331 -10.98047 -10.88520 -10.21781 -10.20368 -10.16491 -10.03022 -9.76238 -9.65800 -9.41132 -9.12584 -8.65288 -7.35803 -6.21797 -4.24210 2.68143 3.00054 3.17896 3.27328 3.34151 4.11190 4.29964 4.61864 5.04477 5.08056 5.11769 5.18614 5.27949 5.41042 5.43363 5.57689 5.66429 5.74545 5.82449 5.88485 5.91298 6.07580 6.08610 6.11722 6.14951 6.27310 6.37943 6.59152 6.64607 6.78268 6.80927 6.94013 7.14328 7.19311 7.36275 7.41887 7.75004 7.96050 8.30719 8.34727 8.81927 9.42298 10.90396 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.012474 B = 0.011230 C = 0.007799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2244.121956 B = 2492.713457 C = 3589.342448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.060 3.940 3 O -0.357 6.357 4 C 0.478 3.522 5 O -0.494 6.494 6 C 0.064 3.936 7 H 0.097 0.903 8 C 0.081 3.919 9 O -0.379 6.379 10 C 0.060 3.940 11 C 0.021 3.979 12 N -0.508 5.508 13 C 0.170 3.830 14 H 0.050 0.950 15 C -0.553 4.553 16 H 0.081 0.919 17 C 0.084 3.916 18 N -0.889 5.889 19 Si 0.860 3.140 20 H -0.274 1.274 21 H -0.286 1.286 22 H -0.261 1.261 23 C -0.106 4.106 24 C -0.142 4.142 25 H 0.067 0.933 26 H 0.075 0.925 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.098 0.902 31 H 0.059 0.941 32 H 0.053 0.947 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.061 0.939 36 H 0.265 0.735 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.058 0.942 40 H 0.041 0.959 41 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.607 -3.508 10.364 10.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.014 4.014 3 O -0.274 6.274 4 C 0.320 3.680 5 O -0.380 6.380 6 C -0.047 4.047 7 H 0.114 0.886 8 C 0.003 3.997 9 O -0.297 6.297 10 C -0.017 4.017 11 C -0.107 4.107 12 N -0.235 5.235 13 C 0.064 3.936 14 H 0.068 0.932 15 C -0.591 4.591 16 H 0.099 0.901 17 C -0.120 4.120 18 N -0.526 5.526 19 Si 0.687 3.313 20 H -0.200 1.200 21 H -0.212 1.212 22 H -0.185 1.185 23 C -0.145 4.145 24 C -0.200 4.200 25 H 0.087 0.913 26 H 0.094 0.906 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.116 0.884 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.111 0.889 34 H 0.105 0.895 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.061 0.939 41 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 0.897 -3.977 10.548 11.308 hybrid contribution -0.637 -0.929 -1.141 1.603 sum 0.261 -4.906 9.407 10.612 Atomic orbital electron populations 1.21785 0.92891 1.02544 1.03596 1.22951 0.95279 0.80970 1.02175 1.86532 1.25025 1.31649 1.84146 1.23418 0.80140 0.92506 0.71963 1.90603 1.60235 1.42872 1.44266 1.21710 0.94331 0.90582 0.98036 0.88573 1.22474 0.98626 0.85480 0.93135 1.87961 1.33699 1.29431 1.78649 1.22798 0.84743 1.01320 0.92852 1.22721 1.01094 0.90935 0.95935 1.62671 1.17713 1.22167 1.20940 1.19906 0.93954 0.96050 0.83726 0.93235 1.21603 1.24385 0.95268 1.17867 0.90140 1.24961 0.94819 0.97114 0.95083 1.69900 1.28661 1.34454 1.19540 0.87107 0.79545 0.87064 0.77591 1.19983 1.21163 1.18493 1.21698 0.96565 0.97715 0.98510 1.21735 0.97923 0.99407 1.00912 0.91342 0.90598 0.91515 0.91603 0.91506 0.88355 0.92295 0.92821 0.88858 0.89491 0.92124 0.92502 0.92826 0.92819 0.92247 0.93949 0.94954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 10.29 37.16 0.38 -1.47 16 2 C 0.06 0.96 6.19 37.16 0.23 1.19 16 3 O -0.36 -6.85 10.22 -39.26 -0.40 -7.25 16 4 C 0.48 9.87 6.01 36.00 0.22 10.09 16 5 O -0.49 -10.98 15.22 -18.75 -0.29 -11.26 16 6 C 0.06 1.27 2.22 -68.75 -0.15 1.12 16 7 H 0.10 2.14 7.37 -51.93 -0.38 1.76 16 8 C 0.08 1.31 6.28 37.21 0.23 1.55 16 9 O -0.38 -6.34 10.83 -35.23 -0.38 -6.72 16 10 C 0.06 0.90 7.01 37.21 0.26 1.17 16 11 C 0.02 0.38 5.00 -3.71 -0.02 0.37 16 12 N -0.51 -10.45 3.66 -221.18 -0.81 -11.26 16 13 C 0.17 3.99 1.06 -68.87 -0.07 3.92 16 14 H 0.05 1.27 3.28 -51.93 -0.17 1.10 16 15 C -0.55 -14.78 7.42 -34.44 -0.26 -15.03 16 16 H 0.08 2.31 6.22 -52.49 -0.33 1.99 16 17 C 0.08 2.37 5.47 -17.82 -0.10 2.28 16 18 N -0.89 -26.39 13.96 55.43 0.77 -25.62 16 19 Si 0.86 21.69 26.96 -169.99 -4.58 17.10 16 20 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 H -0.26 -6.50 6.86 56.52 0.39 -6.12 16 23 C -0.11 -2.28 5.21 -26.73 -0.14 -2.42 16 24 C -0.14 -2.70 9.79 37.16 0.36 -2.34 16 25 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.07 1.15 8.13 -51.93 -0.42 0.72 16 29 H 0.07 0.94 8.13 -51.93 -0.42 0.52 16 30 H 0.10 1.39 8.14 -51.93 -0.42 0.96 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.09 1.50 6.17 -51.93 -0.32 1.18 16 35 H 0.06 1.25 6.19 -51.93 -0.32 0.93 16 36 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 37 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.05 1.08 6.22 -51.93 -0.32 0.76 16 39 H 0.06 1.10 7.72 -51.93 -0.40 0.70 16 40 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 323.04 15.07 4.87 4.87 Total: -1.00 -30.89 323.04 -6.33 -37.22 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -6.47 Total: 2.52 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: 0.95 Total: 0.40 kcal Atomic # 7 Polarization: -36.84 SS G_CDS: -0.04 Total: -36.88 kcal Atomic # 8 Polarization: -24.16 SS G_CDS: -1.07 Total: -25.23 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.58 Total: 17.10 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.89 -6.33 -37.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255179366.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.986 kcal (2) G-P(sol) polarization free energy of solvation -30.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds