Wall clock time and date at job start Mon Mar 30 2020 01:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45203 * 109.46756 * 2 1 4 4 C 1.34231 * 116.99934 * 179.97438 * 3 2 1 5 5 O 1.20828 * 119.99504 * 359.97438 * 4 3 2 6 6 C 1.50696 * 119.99950 * 179.97438 * 4 3 2 7 7 H 1.08992 * 109.54458 * 32.27527 * 6 4 3 8 8 C 1.53093 * 109.50829 * 272.16218 * 6 4 3 9 9 O 1.43017 * 109.25884 * 183.21727 * 8 6 4 10 10 C 1.43020 * 113.73672 * 58.67567 * 9 8 6 11 11 C 1.53099 * 109.25686 * 301.32743 * 10 9 8 12 12 N 1.47012 * 109.25848 * 56.85179 * 11 10 9 13 13 C 1.46900 * 111.00324 * 177.60987 * 12 11 10 14 14 H 1.08994 * 109.47463 * 180.34850 * 13 12 11 15 15 C 1.50702 * 109.47220 * 60.34611 * 13 12 11 16 16 H 1.08003 * 119.99820 * 354.55253 * 15 13 12 17 17 C 1.37871 * 119.99979 * 174.55625 * 15 13 12 18 18 N 1.31514 * 120.00187 * 0.02562 * 17 15 13 19 19 Si 1.86805 * 120.00044 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47035 * 179.97438 * 19 17 15 21 21 H 1.48495 * 109.47174 * 300.00299 * 19 17 15 22 22 H 1.48498 * 109.46999 * 60.00144 * 19 17 15 23 23 C 1.52999 * 109.46559 * 300.34897 * 13 12 11 24 24 C 1.53002 * 109.47530 * 297.11383 * 23 13 12 25 25 H 1.08999 * 109.47117 * 299.99867 * 1 2 3 26 26 H 1.09001 * 109.47114 * 60.00240 * 1 2 3 27 27 H 1.08997 * 109.46864 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47117 * 240.00133 * 2 1 3 29 29 H 1.09001 * 109.47114 * 119.99760 * 2 1 3 30 30 H 1.09004 * 109.50658 * 63.28321 * 8 6 4 31 31 H 1.08998 * 109.54435 * 303.17396 * 8 6 4 32 32 H 1.09006 * 109.50544 * 181.39271 * 10 9 8 33 33 H 1.09000 * 109.50620 * 61.26400 * 10 9 8 34 34 H 1.09001 * 109.50832 * 296.91552 * 11 10 9 35 35 H 1.08998 * 109.50807 * 176.78886 * 11 10 9 36 36 H 0.97007 * 120.00161 * 180.02562 * 18 17 15 37 37 H 1.08997 * 109.47597 * 57.11889 * 23 13 12 38 38 H 1.09005 * 109.47261 * 177.11451 * 23 13 12 39 39 H 1.09004 * 109.46241 * 62.75578 * 24 23 13 40 40 H 1.08988 * 109.47483 * 182.75312 * 24 23 13 41 41 H 1.08998 * 109.46826 * 302.76072 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5450 0.0005 5 8 4.0807 0.5867 0.0015 6 6 3.9206 2.9375 0.0000 7 1 3.2572 3.6067 0.5477 8 6 4.0663 3.4299 -1.4423 9 8 4.6823 4.7207 -1.4401 10 6 5.9718 4.7421 -0.8219 11 6 5.8454 4.2630 0.6267 12 7 5.2427 2.9222 0.6431 13 6 5.1553 2.4010 2.0137 14 1 4.7115 1.4056 1.9963 15 6 4.2979 3.3187 2.8465 16 1 3.9340 4.2455 2.4278 17 6 3.9780 2.9754 4.1429 18 7 4.4215 1.8473 4.6529 19 14 2.9157 4.1134 5.1755 20 1 2.7183 3.5197 6.5221 21 1 3.5866 5.4315 5.3085 22 1 1.5973 4.2934 4.5163 23 6 6.5578 2.3236 2.6201 24 6 7.4072 1.3366 1.8167 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.0818 3.4973 -1.9051 31 1 4.6861 2.7319 -2.0050 32 1 6.3654 5.7586 -0.8361 33 1 6.6473 4.0820 -1.3660 34 1 5.2127 4.9534 1.1845 35 1 6.8338 4.2234 1.0845 36 1 4.1960 1.6055 5.5650 37 1 7.0214 3.3096 2.5907 38 1 6.4885 1.9855 3.6541 39 1 7.5173 1.7000 0.7950 40 1 8.3906 1.2445 2.2775 41 1 6.9186 0.3623 1.8053 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255179368.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:40 Heat of formation + Delta-G solvation = -126.487856 kcal Electronic energy + Delta-G solvation = -23019.137168 eV Core-core repulsion = 19706.492511 eV Total energy + Delta-G solvation = -3312.644656 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.26933 -38.74163 -36.34571 -35.68068 -32.73168 -31.86166 -31.23741 -30.61988 -27.68037 -25.48042 -24.70498 -22.98604 -22.68116 -21.21539 -20.01968 -19.01349 -17.36955 -16.54837 -16.42665 -15.96269 -15.50611 -15.40820 -14.65589 -14.45142 -14.09663 -13.52116 -13.42242 -13.28716 -12.83202 -12.70153 -12.38333 -11.99199 -11.88994 -11.49820 -11.34884 -11.29313 -11.11833 -10.95940 -10.92009 -10.74722 -10.46464 -10.15813 -10.04313 -9.76082 -9.71762 -9.53251 -9.31180 -8.99849 -8.40836 -7.33200 -6.05797 -4.19101 2.81502 3.09355 3.25253 3.30382 3.33071 4.13667 4.35294 4.75019 5.10884 5.14089 5.18770 5.24891 5.33649 5.45848 5.49212 5.61840 5.68968 5.78184 5.88550 5.96102 5.98110 6.11742 6.15130 6.31835 6.40776 6.46665 6.62067 6.65720 6.91867 7.01217 7.17263 7.20868 7.38769 7.51733 7.65872 7.74911 8.01324 8.09841 8.31616 8.43952 8.89496 9.48931 10.95711 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.011610 B = 0.009704 C = 0.007171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2411.095586 B = 2884.859852 C = 3903.787287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.063 3.937 3 O -0.361 6.361 4 C 0.482 3.518 5 O -0.488 6.488 6 C 0.066 3.934 7 H 0.087 0.913 8 C 0.079 3.921 9 O -0.382 6.382 10 C 0.058 3.942 11 C 0.024 3.976 12 N -0.513 5.513 13 C 0.207 3.793 14 H 0.054 0.946 15 C -0.555 4.555 16 H 0.057 0.943 17 C 0.073 3.927 18 N -0.881 5.881 19 Si 0.887 3.113 20 H -0.286 1.286 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.105 4.105 24 C -0.137 4.137 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.075 0.925 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.097 0.903 31 H 0.059 0.941 32 H 0.092 0.908 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.089 0.911 36 H 0.263 0.737 37 H 0.035 0.965 38 H 0.083 0.917 39 H 0.047 0.953 40 H 0.025 0.975 41 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.400 0.530 -9.624 9.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.012 4.012 3 O -0.278 6.278 4 C 0.323 3.677 5 O -0.373 6.373 6 C -0.044 4.044 7 H 0.105 0.895 8 C 0.001 3.999 9 O -0.300 6.300 10 C -0.018 4.018 11 C -0.105 4.105 12 N -0.240 5.240 13 C 0.101 3.899 14 H 0.072 0.928 15 C -0.594 4.594 16 H 0.075 0.925 17 C -0.131 4.131 18 N -0.519 5.519 19 Si 0.714 3.286 20 H -0.212 1.212 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.143 4.143 24 C -0.194 4.194 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.093 0.907 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.115 0.885 31 H 0.077 0.923 32 H 0.110 0.890 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.107 0.893 36 H 0.073 0.927 37 H 0.053 0.947 38 H 0.101 0.899 39 H 0.066 0.934 40 H 0.044 0.956 41 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -1.977 -0.083 -9.797 9.995 hybrid contribution -0.984 0.665 1.517 1.926 sum -2.961 0.582 -8.280 8.813 Atomic orbital electron populations 1.21780 0.93127 1.02465 1.03366 1.22907 0.94944 0.80969 1.02332 1.86497 1.25194 1.31689 1.84449 1.23248 0.80029 0.92334 0.72112 1.90618 1.60155 1.42753 1.43767 1.21674 0.94284 0.90622 0.97857 0.89499 1.22494 0.98533 0.85446 0.93433 1.87946 1.33073 1.29458 1.79534 1.22823 0.84516 1.01218 0.93289 1.22686 1.01344 0.90926 0.95496 1.62681 1.16768 1.21552 1.22980 1.19494 0.93593 0.96149 0.80669 0.92816 1.21669 1.32577 1.06543 0.98578 0.92513 1.24891 0.95525 0.94956 0.97707 1.69916 1.44463 1.22034 1.15460 0.86742 0.81144 0.81151 0.79548 1.21203 1.20194 1.20184 1.21542 0.95204 0.96463 1.01116 1.21687 0.97712 1.00149 0.99876 0.91416 0.91783 0.90667 0.91766 0.91200 0.88485 0.92269 0.89004 0.92763 0.92891 0.89328 0.92729 0.94659 0.89863 0.93402 0.95618 0.93820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 10.29 37.16 0.38 -1.37 16 2 C 0.06 0.96 6.19 37.16 0.23 1.19 16 3 O -0.36 -6.75 10.22 -39.26 -0.40 -7.15 16 4 C 0.48 9.99 6.08 36.00 0.22 10.20 16 5 O -0.49 -11.19 15.13 -18.75 -0.28 -11.47 16 6 C 0.07 1.32 2.18 -68.75 -0.15 1.17 16 7 H 0.09 1.87 6.86 -51.93 -0.36 1.51 16 8 C 0.08 1.29 6.27 37.21 0.23 1.52 16 9 O -0.38 -6.39 10.83 -35.23 -0.38 -6.77 16 10 C 0.06 0.90 7.01 37.21 0.26 1.16 16 11 C 0.02 0.44 4.98 -3.71 -0.02 0.42 16 12 N -0.51 -10.86 3.69 -221.17 -0.82 -11.67 16 13 C 0.21 5.10 1.32 -68.86 -0.09 5.01 16 14 H 0.05 1.54 6.12 -51.93 -0.32 1.22 16 15 C -0.55 -14.62 7.03 -34.44 -0.24 -14.86 16 16 H 0.06 1.49 5.81 -52.48 -0.30 1.19 16 17 C 0.07 1.97 5.31 -17.82 -0.09 1.87 16 18 N -0.88 -24.84 11.72 55.43 0.65 -24.19 16 19 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 C -0.10 -2.48 5.00 -26.73 -0.13 -2.61 16 24 C -0.14 -2.88 9.75 37.16 0.36 -2.51 16 25 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.90 8.13 -51.93 -0.42 0.48 16 29 H 0.07 1.17 8.13 -51.93 -0.42 0.75 16 30 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.05 1.08 6.48 -51.93 -0.34 0.74 16 35 H 0.09 1.62 6.12 -51.93 -0.32 1.30 16 36 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 37 H 0.03 0.79 6.20 -51.93 -0.32 0.47 16 38 H 0.08 2.20 6.46 -51.93 -0.34 1.86 16 39 H 0.05 0.96 7.77 -51.93 -0.40 0.56 16 40 H 0.02 0.47 8.14 -51.94 -0.42 0.05 16 41 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 323.54 15.07 4.88 4.88 Total: -1.00 -29.89 323.54 -6.90 -36.79 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -6.48 Total: 2.43 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: 0.96 Total: 1.20 kcal Atomic # 7 Polarization: -35.70 SS G_CDS: -0.17 Total: -35.86 kcal Atomic # 8 Polarization: -24.32 SS G_CDS: -1.07 Total: -25.39 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.89 -6.90 -36.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255179368.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.699 kcal (2) G-P(sol) polarization free energy of solvation -29.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds