Wall clock time and date at job start Mon Mar 30 2020 01:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45203 * 109.46756 * 2 1 4 4 C 1.34231 * 116.99934 * 179.97438 * 3 2 1 5 5 O 1.20828 * 119.99504 * 359.97438 * 4 3 2 6 6 C 1.50696 * 119.99950 * 179.97438 * 4 3 2 7 7 H 1.08992 * 109.54458 * 32.27527 * 6 4 3 8 8 C 1.53093 * 109.50829 * 272.16218 * 6 4 3 9 9 O 1.43017 * 109.25884 * 183.21727 * 8 6 4 10 10 C 1.43020 * 113.73672 * 58.67567 * 9 8 6 11 11 C 1.53099 * 109.25686 * 301.32743 * 10 9 8 12 12 N 1.47012 * 109.25848 * 56.85179 * 11 10 9 13 13 C 1.46900 * 111.00324 * 177.60987 * 12 11 10 14 14 H 1.08994 * 109.47463 * 180.34850 * 13 12 11 15 15 C 1.50702 * 109.47220 * 60.34611 * 13 12 11 16 16 H 1.08003 * 119.99820 * 354.55253 * 15 13 12 17 17 C 1.37871 * 119.99979 * 174.55625 * 15 13 12 18 18 N 1.31514 * 120.00187 * 0.02562 * 17 15 13 19 19 Si 1.86805 * 120.00044 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47035 * 179.97438 * 19 17 15 21 21 H 1.48495 * 109.47174 * 300.00299 * 19 17 15 22 22 H 1.48498 * 109.46999 * 60.00144 * 19 17 15 23 23 C 1.52999 * 109.46559 * 300.34897 * 13 12 11 24 24 C 1.53002 * 109.47530 * 297.11383 * 23 13 12 25 25 H 1.08999 * 109.47117 * 299.99867 * 1 2 3 26 26 H 1.09001 * 109.47114 * 60.00240 * 1 2 3 27 27 H 1.08997 * 109.46864 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47117 * 240.00133 * 2 1 3 29 29 H 1.09001 * 109.47114 * 119.99760 * 2 1 3 30 30 H 1.09004 * 109.50658 * 63.28321 * 8 6 4 31 31 H 1.08998 * 109.54435 * 303.17396 * 8 6 4 32 32 H 1.09006 * 109.50544 * 181.39271 * 10 9 8 33 33 H 1.09000 * 109.50620 * 61.26400 * 10 9 8 34 34 H 1.09001 * 109.50832 * 296.91552 * 11 10 9 35 35 H 1.08998 * 109.50807 * 176.78886 * 11 10 9 36 36 H 0.97007 * 120.00161 * 180.02562 * 18 17 15 37 37 H 1.08997 * 109.47597 * 57.11889 * 23 13 12 38 38 H 1.09005 * 109.47261 * 177.11451 * 23 13 12 39 39 H 1.09004 * 109.46241 * 62.75578 * 24 23 13 40 40 H 1.08988 * 109.47483 * 182.75312 * 24 23 13 41 41 H 1.08998 * 109.46826 * 302.76072 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5450 0.0005 5 8 4.0807 0.5867 0.0015 6 6 3.9206 2.9375 0.0000 7 1 3.2572 3.6067 0.5477 8 6 4.0663 3.4299 -1.4423 9 8 4.6823 4.7207 -1.4401 10 6 5.9718 4.7421 -0.8219 11 6 5.8454 4.2630 0.6267 12 7 5.2427 2.9222 0.6431 13 6 5.1553 2.4010 2.0137 14 1 4.7115 1.4056 1.9963 15 6 4.2979 3.3187 2.8465 16 1 3.9340 4.2455 2.4278 17 6 3.9780 2.9754 4.1429 18 7 4.4215 1.8473 4.6529 19 14 2.9157 4.1134 5.1755 20 1 2.7183 3.5197 6.5221 21 1 3.5866 5.4315 5.3085 22 1 1.5973 4.2934 4.5163 23 6 6.5578 2.3236 2.6201 24 6 7.4072 1.3366 1.8167 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.0818 3.4973 -1.9051 31 1 4.6861 2.7319 -2.0050 32 1 6.3654 5.7586 -0.8361 33 1 6.6473 4.0820 -1.3660 34 1 5.2127 4.9534 1.1845 35 1 6.8338 4.2234 1.0845 36 1 4.1960 1.6055 5.5650 37 1 7.0214 3.3096 2.5907 38 1 6.4885 1.9855 3.6541 39 1 7.5173 1.7000 0.7950 40 1 8.3906 1.2445 2.2775 41 1 6.9186 0.3623 1.8053 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255179368.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:39 Heat of formation + Delta-G solvation = -145.929732 kcal Electronic energy + Delta-G solvation = -23019.980231 eV Core-core repulsion = 19706.492511 eV Total energy + Delta-G solvation = -3313.487719 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.84609 -40.22043 -37.90335 -37.33995 -34.59498 -33.50169 -32.68554 -32.00179 -29.43252 -27.25868 -26.12127 -24.70254 -24.05614 -22.66058 -21.70035 -20.77190 -19.00070 -18.35287 -17.95393 -17.59873 -16.92116 -16.83017 -16.41106 -16.00932 -15.60255 -15.09734 -14.93836 -14.92136 -14.54615 -14.04915 -13.65720 -13.57700 -13.42569 -13.22226 -12.94107 -12.78661 -12.72230 -12.58848 -12.50577 -12.31534 -12.22096 -11.81460 -11.68700 -11.51088 -11.31736 -11.23060 -11.12903 -10.55873 -10.46864 -9.11065 -8.10780 -6.32420 1.19449 1.35791 1.36261 1.43593 1.65632 2.36213 2.83141 3.11251 3.19127 3.73858 3.87370 3.99100 4.09784 4.09985 4.24782 4.31507 4.35770 4.43416 4.55089 4.66612 4.67776 4.74640 4.82978 4.83324 4.91429 4.98134 5.10444 5.12040 5.18031 5.34652 5.39407 5.46420 5.54035 5.72001 5.87029 6.04078 6.08226 6.19745 6.42739 6.82213 6.87465 7.38859 8.87518 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.011610 B = 0.009704 C = 0.007171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2411.095586 B = 2884.859852 C = 3903.787287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.053 3.947 3 O -0.365 6.365 4 C 0.480 3.520 5 O -0.517 6.517 6 C 0.063 3.937 7 H 0.067 0.933 8 C 0.087 3.913 9 O -0.385 6.385 10 C 0.064 3.936 11 C 0.023 3.977 12 N -0.515 5.515 13 C 0.217 3.783 14 H 0.009 0.991 15 C -0.558 4.558 16 H 0.054 0.946 17 C 0.024 3.976 18 N -0.911 5.911 19 Si 0.945 3.055 20 H -0.285 1.285 21 H -0.269 1.269 22 H -0.274 1.274 23 C -0.101 4.101 24 C -0.123 4.123 25 H 0.057 0.943 26 H 0.079 0.921 27 H 0.104 0.896 28 H 0.078 0.922 29 H 0.047 0.953 30 H 0.123 0.877 31 H 0.066 0.934 32 H 0.125 0.875 33 H 0.067 0.933 34 H 0.033 0.967 35 H 0.092 0.908 36 H 0.262 0.738 37 H 0.046 0.954 38 H 0.051 0.949 39 H 0.058 0.942 40 H 0.050 0.950 41 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.666 1.717 -11.090 11.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.020 4.020 3 O -0.282 6.282 4 C 0.322 3.678 5 O -0.405 6.405 6 C -0.048 4.048 7 H 0.085 0.915 8 C 0.010 3.990 9 O -0.303 6.303 10 C -0.012 4.012 11 C -0.105 4.105 12 N -0.241 5.241 13 C 0.110 3.890 14 H 0.027 0.973 15 C -0.597 4.597 16 H 0.072 0.928 17 C -0.176 4.176 18 N -0.550 5.550 19 Si 0.771 3.229 20 H -0.210 1.210 21 H -0.194 1.194 22 H -0.199 1.199 23 C -0.139 4.139 24 C -0.180 4.180 25 H 0.076 0.924 26 H 0.098 0.902 27 H 0.122 0.878 28 H 0.097 0.903 29 H 0.065 0.935 30 H 0.141 0.859 31 H 0.085 0.915 32 H 0.143 0.857 33 H 0.085 0.915 34 H 0.051 0.949 35 H 0.110 0.890 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.077 0.923 40 H 0.069 0.931 41 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -2.256 1.125 -11.281 11.559 hybrid contribution -0.926 0.257 1.956 2.179 sum -3.182 1.382 -9.325 9.949 Atomic orbital electron populations 1.21807 0.89867 1.04496 1.03658 1.23262 0.97477 0.79353 1.01957 1.86492 1.24080 1.33755 1.83897 1.23484 0.80547 0.92406 0.71345 1.90595 1.60927 1.43639 1.45307 1.21828 0.93141 0.89880 0.99918 0.91499 1.22548 1.00227 0.85439 0.90810 1.87954 1.33657 1.29427 1.79281 1.22930 0.84345 1.03316 0.90641 1.22790 1.00652 0.89018 0.98026 1.62594 1.17702 1.23135 1.20684 1.19153 0.93509 0.93735 0.82611 0.97301 1.21911 1.32517 1.06472 0.98830 0.92803 1.25619 0.96800 0.96238 0.98961 1.70053 1.45730 1.23569 1.15625 0.85812 0.79573 0.79568 0.77982 1.21004 1.19379 1.19933 1.21407 0.95352 0.97564 0.99587 1.21533 0.98118 0.98143 1.00224 0.92365 0.90169 0.87753 0.90332 0.93472 0.85885 0.91531 0.85746 0.91457 0.94905 0.89007 0.92912 0.93586 0.93071 0.92311 0.93134 0.95954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 10.29 71.98 0.74 -2.33 16 2 C 0.05 1.62 6.19 71.98 0.45 2.07 16 3 O -0.37 -13.75 10.22 -51.42 -0.53 -14.28 16 4 C 0.48 20.20 6.08 71.23 0.43 20.64 16 5 O -0.52 -24.36 15.13 21.96 0.33 -24.03 16 6 C 0.06 2.50 2.18 44.17 0.10 2.60 16 7 H 0.07 2.92 6.86 -2.39 -0.02 2.90 16 8 C 0.09 2.69 6.27 72.01 0.45 3.14 16 9 O -0.38 -11.82 10.83 -148.98 -1.61 -13.43 16 10 C 0.06 1.79 7.01 72.02 0.50 2.30 16 11 C 0.02 0.83 4.98 86.31 0.43 1.26 16 12 N -0.51 -21.77 3.69 -853.66 -3.15 -24.92 16 13 C 0.22 10.98 1.32 44.17 0.06 11.04 16 14 H 0.01 0.54 6.12 -2.39 -0.01 0.53 16 15 C -0.56 -30.04 7.03 25.60 0.18 -29.86 16 16 H 0.05 2.87 5.81 -2.91 -0.02 2.86 16 17 C 0.02 1.34 5.31 84.65 0.45 1.79 16 18 N -0.91 -52.95 11.72 21.44 0.25 -52.70 16 19 Si 0.94 43.50 29.54 68.60 2.03 45.53 16 20 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 21 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 22 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 23 C -0.10 -4.83 5.00 30.59 0.15 -4.67 16 24 C -0.12 -5.14 9.75 71.98 0.70 -4.43 16 25 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.08 2.16 8.13 -2.39 -0.02 2.14 16 29 H 0.05 1.64 8.13 -2.39 -0.02 1.62 16 30 H 0.12 3.13 8.14 -2.39 -0.02 3.11 16 31 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.12 2.71 8.14 -2.38 -0.02 2.69 16 33 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.03 1.32 6.48 -2.39 -0.02 1.30 16 35 H 0.09 3.22 6.12 -2.39 -0.01 3.21 16 36 H 0.26 14.56 8.31 -92.70 -0.77 13.79 16 37 H 0.05 2.06 6.20 -2.39 -0.01 2.05 16 38 H 0.05 2.78 6.46 -2.38 -0.02 2.76 16 39 H 0.06 2.30 7.77 -2.38 -0.02 2.28 16 40 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -66.25 323.54 2.98 -63.27 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: 1.01 Total: 17.02 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: 4.65 Total: 3.53 kcal Atomic # 7 Polarization: -74.72 SS G_CDS: -2.89 Total: -77.62 kcal Atomic # 8 Polarization: -49.93 SS G_CDS: -1.81 Total: -51.74 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -66.25 2.98 -63.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255179368.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.661 kcal (2) G-P(sol) polarization free energy of solvation -66.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds