Wall clock time and date at job start Mon Mar 30 2020 01:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.45200 * 109.47173 * 2 1 4 4 C 1.34227 * 116.99833 * 180.02562 * 3 2 1 5 5 O 1.20820 * 120.00242 * 359.97438 * 4 3 2 6 6 C 1.50708 * 119.99674 * 180.27233 * 4 3 2 7 7 H 1.08996 * 109.50613 * 328.84374 * 6 4 3 8 8 C 1.53104 * 109.50491 * 88.93367 * 6 4 3 9 9 O 1.43023 * 109.25077 * 176.73565 * 8 6 4 10 10 C 1.43019 * 113.77850 * 301.39410 * 9 8 6 11 11 C 1.53096 * 109.25532 * 58.65126 * 10 9 8 12 12 N 1.47018 * 109.50308 * 208.75494 * 6 4 3 13 13 C 1.46901 * 110.99750 * 57.67746 * 12 6 4 14 14 H 1.09000 * 109.47106 * 323.96991 * 13 12 6 15 15 C 1.50701 * 109.47047 * 203.97214 * 13 12 6 16 16 H 1.07999 * 119.99838 * 356.75253 * 15 13 12 17 17 C 1.37873 * 119.99930 * 176.75100 * 15 13 12 18 18 N 1.31521 * 120.00161 * 0.02562 * 17 15 13 19 19 Si 1.86797 * 119.99957 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47209 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47144 * 120.00111 * 19 17 15 22 22 H 1.48502 * 109.47291 * 239.99964 * 19 17 15 23 23 C 1.53000 * 109.47421 * 83.97183 * 13 12 6 24 24 C 1.52999 * 109.47265 * 296.36140 * 23 13 12 25 25 H 1.09002 * 109.47279 * 300.00798 * 1 2 3 26 26 H 1.09001 * 109.47110 * 60.00337 * 1 2 3 27 27 H 1.08998 * 109.47236 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47543 * 239.99673 * 2 1 3 29 29 H 1.09001 * 109.47110 * 119.99663 * 2 1 3 30 30 H 1.08994 * 109.50604 * 296.71351 * 8 6 4 31 31 H 1.09000 * 109.50746 * 56.85044 * 8 6 4 32 32 H 1.09002 * 109.50650 * 298.71986 * 10 9 8 33 33 H 1.08992 * 109.54295 * 178.60576 * 10 9 8 34 34 H 1.08996 * 109.51075 * 183.21594 * 11 10 9 35 35 H 1.08999 * 109.51059 * 63.08015 * 11 10 9 36 36 H 0.96996 * 119.99864 * 179.97438 * 18 17 15 37 37 H 1.09004 * 109.46889 * 56.35724 * 23 13 12 38 38 H 1.08998 * 109.47250 * 176.35930 * 23 13 12 39 39 H 1.09000 * 109.47414 * 77.38711 * 24 23 13 40 40 H 1.09000 * 109.47347 * 197.39518 * 24 23 13 41 41 H 1.09007 * 109.47114 * 317.39681 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0806 0.5866 -0.0005 6 6 3.9207 2.9374 0.0056 7 1 3.2468 3.6123 -0.5219 8 6 4.0927 3.4130 1.4507 9 8 4.7097 4.7034 1.4522 10 6 5.9873 4.7324 0.8100 11 6 5.8334 4.2705 -0.6415 12 7 5.2303 2.9299 -0.6625 13 6 5.1169 2.4250 -2.0373 14 1 4.3693 1.6326 -2.0729 15 6 6.4489 1.8793 -2.4835 16 1 7.3077 1.9524 -1.8327 17 6 6.5711 1.2867 -3.7223 18 7 5.5254 1.1981 -4.5150 19 14 8.2223 0.6110 -4.2756 20 1 9.2310 0.8338 -3.2088 21 1 8.0974 -0.8446 -4.5419 22 1 8.6512 1.3060 -5.5159 23 6 4.6959 3.5654 -2.9664 24 6 3.3033 4.0591 -2.5693 25 1 -0.3634 0.5140 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.1168 3.4749 1.9321 31 1 4.7230 2.7084 1.9932 32 1 6.6729 4.0658 1.3332 33 1 6.3818 5.7482 0.8288 34 1 6.8128 4.2364 -1.1185 35 1 5.1902 4.9673 -1.1790 36 1 5.6115 0.7816 -5.3867 37 1 5.4096 4.3850 -2.8820 38 1 4.6745 3.2067 -3.9954 39 1 3.3799 4.6884 -1.6826 40 1 2.8751 4.6363 -3.3888 41 1 2.6625 3.2040 -2.3535 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255179369.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:42 Heat of formation + Delta-G solvation = -113.042792 kcal Electronic energy + Delta-G solvation = -23046.119886 eV Core-core repulsion = 19734.058252 eV Total energy + Delta-G solvation = -3312.061635 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.47522 -38.90422 -36.48263 -35.86015 -32.73410 -31.81242 -30.97453 -30.83275 -28.09250 -25.50478 -24.90089 -23.08836 -22.73047 -21.27561 -20.13984 -19.05241 -17.38405 -16.75046 -16.31434 -16.01794 -15.64886 -15.41907 -14.80055 -14.47030 -14.30880 -13.75730 -13.58664 -13.35856 -12.86802 -12.68065 -12.28985 -12.07128 -11.88334 -11.61652 -11.51550 -11.37058 -11.24581 -10.96612 -10.82734 -10.69236 -10.48195 -10.21914 -10.15307 -9.97184 -9.84188 -9.67106 -9.25720 -8.91084 -8.34678 -7.26556 -6.00337 -4.01898 2.73422 2.95529 3.31624 3.39459 3.44498 4.06898 4.40253 4.70984 5.02929 5.05626 5.15306 5.20142 5.32229 5.38100 5.42251 5.54222 5.56084 5.71556 5.81419 5.88279 5.90755 5.96913 6.00676 6.03358 6.07222 6.28285 6.35911 6.43519 6.71788 6.82185 6.87214 7.08589 7.21122 7.34835 7.55237 7.81275 8.03532 8.22389 8.33540 8.50943 9.02653 9.61648 11.07834 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.014441 B = 0.008146 C = 0.006243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.415851 B = 3436.589261 C = 4483.762801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.061 3.939 3 O -0.367 6.367 4 C 0.467 3.533 5 O -0.469 6.469 6 C 0.040 3.960 7 H 0.091 0.909 8 C 0.079 3.921 9 O -0.382 6.382 10 C 0.057 3.943 11 C 0.024 3.976 12 N -0.507 5.507 13 C 0.216 3.784 14 H 0.041 0.959 15 C -0.488 4.488 16 H 0.063 0.937 17 C 0.057 3.943 18 N -0.896 5.896 19 Si 0.897 3.103 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.286 1.286 23 C -0.153 4.153 24 C -0.158 4.158 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.097 0.903 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.047 0.953 36 H 0.259 0.741 37 H 0.045 0.955 38 H 0.095 0.905 39 H 0.043 0.957 40 H 0.039 0.961 41 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.170 3.922 8.880 12.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.013 4.013 3 O -0.285 6.285 4 C 0.307 3.693 5 O -0.352 6.352 6 C -0.070 4.070 7 H 0.108 0.892 8 C 0.001 3.999 9 O -0.301 6.301 10 C -0.020 4.020 11 C -0.104 4.104 12 N -0.234 5.234 13 C 0.110 3.890 14 H 0.059 0.941 15 C -0.526 4.526 16 H 0.081 0.919 17 C -0.144 4.144 18 N -0.536 5.536 19 Si 0.726 3.274 20 H -0.197 1.197 21 H -0.212 1.212 22 H -0.212 1.212 23 C -0.193 4.193 24 C -0.215 4.215 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.094 0.906 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.115 0.885 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.112 0.888 34 H 0.114 0.886 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.113 0.887 39 H 0.062 0.938 40 H 0.058 0.942 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.775 3.344 9.053 11.792 hybrid contribution 0.422 -0.399 -1.165 1.302 sum -6.353 2.945 7.887 10.547 Atomic orbital electron populations 1.21780 0.93015 1.02597 1.03284 1.22937 0.94937 0.80824 1.02599 1.86478 1.25219 1.31942 1.84827 1.23311 0.80133 0.92547 0.73347 1.90704 1.59910 1.42403 1.42176 1.22293 0.94932 0.90816 0.98966 0.89157 1.22477 0.98564 0.85637 0.93191 1.87933 1.34156 1.29619 1.78381 1.22843 0.84805 1.01417 0.92921 1.22785 1.01622 0.90163 0.95790 1.62557 1.16703 1.22054 1.22097 1.19485 0.98172 0.91866 0.79445 0.94149 1.21038 0.94875 1.36532 1.00183 0.91861 1.24922 0.96762 0.96050 0.96667 1.69910 1.28982 1.44905 1.09765 0.86447 0.84028 0.78627 0.78342 1.19714 1.21164 1.21219 1.22288 0.92727 0.98939 1.05337 1.22194 0.99845 0.99906 0.99508 0.91746 0.91505 0.90556 0.91117 0.91594 0.88464 0.92013 0.92388 0.88838 0.88636 0.93478 0.93115 0.93620 0.88673 0.93814 0.94154 0.93584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 10.29 37.15 0.38 -1.20 16 2 C 0.06 0.89 6.19 37.15 0.23 1.12 16 3 O -0.37 -6.38 10.22 -39.25 -0.40 -6.78 16 4 C 0.47 9.41 5.70 36.01 0.21 9.61 16 5 O -0.47 -11.09 15.56 -18.75 -0.29 -11.38 16 6 C 0.04 0.75 1.97 -68.74 -0.14 0.62 16 7 H 0.09 1.68 4.09 -51.93 -0.21 1.46 16 8 C 0.08 1.26 6.28 37.21 0.23 1.49 16 9 O -0.38 -6.15 10.82 -35.23 -0.38 -6.53 16 10 C 0.06 0.87 7.01 37.21 0.26 1.13 16 11 C 0.02 0.45 4.30 -3.71 -0.02 0.43 16 12 N -0.51 -10.88 4.12 -221.16 -0.91 -11.80 16 13 C 0.22 5.39 1.44 -68.86 -0.10 5.29 16 14 H 0.04 1.15 5.95 -51.93 -0.31 0.84 16 15 C -0.49 -13.51 8.30 -34.44 -0.29 -13.79 16 16 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 17 C 0.06 1.58 5.30 -17.82 -0.09 1.49 16 18 N -0.90 -25.71 11.55 55.43 0.64 -25.07 16 19 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 20 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 C -0.15 -3.54 4.73 -26.73 -0.13 -3.66 16 24 C -0.16 -3.07 8.07 37.16 0.30 -2.77 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.07 1.13 8.13 -51.93 -0.42 0.71 16 29 H 0.07 0.90 8.13 -51.93 -0.42 0.48 16 30 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 34 H 0.10 1.82 7.77 -51.93 -0.40 1.42 16 35 H 0.05 0.86 4.94 -51.93 -0.26 0.60 16 36 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 37 H 0.05 1.01 6.20 -51.93 -0.32 0.69 16 38 H 0.09 2.49 6.25 -51.93 -0.32 2.17 16 39 H 0.04 0.78 4.97 -51.93 -0.26 0.53 16 40 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.05 0.93 7.46 -51.92 -0.39 0.54 16 LS Contribution 317.85 15.07 4.79 4.79 Total: -1.00 -31.20 317.85 -6.97 -38.17 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -6.24 Total: 2.11 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: 0.85 Total: -0.25 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: -0.27 Total: -36.87 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: -1.07 Total: -24.69 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.20 -6.97 -38.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255179369.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.875 kcal (2) G-P(sol) polarization free energy of solvation -31.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds