Wall clock time and date at job start Mon Mar 30 2020 01:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.45200 * 109.47173 * 2 1 4 4 C 1.34227 * 116.99833 * 180.02562 * 3 2 1 5 5 O 1.20820 * 120.00242 * 359.97438 * 4 3 2 6 6 C 1.50708 * 119.99674 * 180.27233 * 4 3 2 7 7 H 1.08996 * 109.50613 * 328.84374 * 6 4 3 8 8 C 1.53104 * 109.50491 * 88.93367 * 6 4 3 9 9 O 1.43023 * 109.25077 * 176.73565 * 8 6 4 10 10 C 1.43019 * 113.77850 * 301.39410 * 9 8 6 11 11 C 1.53096 * 109.25532 * 58.65126 * 10 9 8 12 12 N 1.47018 * 109.50308 * 208.75494 * 6 4 3 13 13 C 1.46901 * 110.99750 * 57.67746 * 12 6 4 14 14 H 1.09000 * 109.47106 * 323.96991 * 13 12 6 15 15 C 1.50701 * 109.47047 * 203.97214 * 13 12 6 16 16 H 1.07999 * 119.99838 * 356.75253 * 15 13 12 17 17 C 1.37873 * 119.99930 * 176.75100 * 15 13 12 18 18 N 1.31521 * 120.00161 * 0.02562 * 17 15 13 19 19 Si 1.86797 * 119.99957 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47209 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47144 * 120.00111 * 19 17 15 22 22 H 1.48502 * 109.47291 * 239.99964 * 19 17 15 23 23 C 1.53000 * 109.47421 * 83.97183 * 13 12 6 24 24 C 1.52999 * 109.47265 * 296.36140 * 23 13 12 25 25 H 1.09002 * 109.47279 * 300.00798 * 1 2 3 26 26 H 1.09001 * 109.47110 * 60.00337 * 1 2 3 27 27 H 1.08998 * 109.47236 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47543 * 239.99673 * 2 1 3 29 29 H 1.09001 * 109.47110 * 119.99663 * 2 1 3 30 30 H 1.08994 * 109.50604 * 296.71351 * 8 6 4 31 31 H 1.09000 * 109.50746 * 56.85044 * 8 6 4 32 32 H 1.09002 * 109.50650 * 298.71986 * 10 9 8 33 33 H 1.08992 * 109.54295 * 178.60576 * 10 9 8 34 34 H 1.08996 * 109.51075 * 183.21594 * 11 10 9 35 35 H 1.08999 * 109.51059 * 63.08015 * 11 10 9 36 36 H 0.96996 * 119.99864 * 179.97438 * 18 17 15 37 37 H 1.09004 * 109.46889 * 56.35724 * 23 13 12 38 38 H 1.08998 * 109.47250 * 176.35930 * 23 13 12 39 39 H 1.09000 * 109.47414 * 77.38711 * 24 23 13 40 40 H 1.09000 * 109.47347 * 197.39518 * 24 23 13 41 41 H 1.09007 * 109.47114 * 317.39681 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0806 0.5866 -0.0005 6 6 3.9207 2.9374 0.0056 7 1 3.2468 3.6123 -0.5219 8 6 4.0927 3.4130 1.4507 9 8 4.7097 4.7034 1.4522 10 6 5.9873 4.7324 0.8100 11 6 5.8334 4.2705 -0.6415 12 7 5.2303 2.9299 -0.6625 13 6 5.1169 2.4250 -2.0373 14 1 4.3693 1.6326 -2.0729 15 6 6.4489 1.8793 -2.4835 16 1 7.3077 1.9524 -1.8327 17 6 6.5711 1.2867 -3.7223 18 7 5.5254 1.1981 -4.5150 19 14 8.2223 0.6110 -4.2756 20 1 9.2310 0.8338 -3.2088 21 1 8.0974 -0.8446 -4.5419 22 1 8.6512 1.3060 -5.5159 23 6 4.6959 3.5654 -2.9664 24 6 3.3033 4.0591 -2.5693 25 1 -0.3634 0.5140 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.1168 3.4749 1.9321 31 1 4.7230 2.7084 1.9932 32 1 6.6729 4.0658 1.3332 33 1 6.3818 5.7482 0.8288 34 1 6.8128 4.2364 -1.1185 35 1 5.1902 4.9673 -1.1790 36 1 5.6115 0.7816 -5.3867 37 1 5.4096 4.3850 -2.8820 38 1 4.6745 3.2067 -3.9954 39 1 3.3799 4.6884 -1.6826 40 1 2.8751 4.6363 -3.3888 41 1 2.6625 3.2040 -2.3535 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255179369.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:41 Heat of formation + Delta-G solvation = -134.375320 kcal Electronic energy + Delta-G solvation = -23047.044934 eV Core-core repulsion = 19734.058252 eV Total energy + Delta-G solvation = -3312.986682 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.01336 -40.35958 -37.98372 -37.45871 -34.68376 -33.15750 -32.60114 -32.11184 -29.84489 -27.26508 -26.26066 -24.76513 -24.07824 -22.67637 -21.81400 -20.67615 -18.91137 -18.57400 -17.89994 -17.56857 -17.10638 -16.83464 -16.37591 -16.10217 -15.87658 -15.24667 -14.99503 -14.88491 -14.56798 -13.85305 -13.65337 -13.53059 -13.48819 -13.27184 -12.96851 -12.80981 -12.79588 -12.56993 -12.52212 -12.30066 -12.18127 -12.03499 -11.69848 -11.53520 -11.44687 -11.31864 -11.01834 -10.58346 -10.45762 -8.92474 -8.13107 -6.21615 1.16162 1.36992 1.39350 1.51005 1.57660 2.39775 2.80081 3.13299 3.18756 3.71596 3.79707 3.97207 4.00546 4.09006 4.15162 4.24497 4.31292 4.33738 4.41074 4.48361 4.58980 4.64843 4.68792 4.83456 4.91792 4.93818 4.95823 4.98885 5.11998 5.15231 5.28352 5.43245 5.47525 5.68059 5.68820 6.04475 6.17874 6.38759 6.50100 6.82912 6.88210 7.45630 8.93706 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.014441 B = 0.008146 C = 0.006243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.415851 B = 3436.589261 C = 4483.762801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.051 3.949 3 O -0.362 6.362 4 C 0.468 3.532 5 O -0.515 6.515 6 C 0.039 3.961 7 H 0.098 0.902 8 C 0.085 3.915 9 O -0.379 6.379 10 C 0.063 3.937 11 C 0.023 3.977 12 N -0.525 5.525 13 C 0.226 3.774 14 H -0.001 1.001 15 C -0.505 4.505 16 H 0.052 0.948 17 C 0.009 3.991 18 N -0.921 5.921 19 Si 0.957 3.043 20 H -0.269 1.269 21 H -0.287 1.287 22 H -0.275 1.275 23 C -0.145 4.145 24 C -0.145 4.145 25 H 0.080 0.920 26 H 0.063 0.937 27 H 0.101 0.899 28 H 0.047 0.953 29 H 0.073 0.927 30 H 0.130 0.870 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.130 0.870 34 H 0.082 0.918 35 H 0.052 0.948 36 H 0.260 0.740 37 H 0.052 0.948 38 H 0.060 0.940 39 H 0.064 0.936 40 H 0.058 0.942 41 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.783 5.275 10.117 13.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.022 4.022 3 O -0.279 6.279 4 C 0.310 3.690 5 O -0.401 6.401 6 C -0.071 4.071 7 H 0.115 0.885 8 C 0.007 3.993 9 O -0.297 6.297 10 C -0.013 4.013 11 C -0.104 4.104 12 N -0.252 5.252 13 C 0.120 3.880 14 H 0.016 0.984 15 C -0.544 4.544 16 H 0.070 0.930 17 C -0.189 4.189 18 N -0.562 5.562 19 Si 0.783 3.217 20 H -0.193 1.193 21 H -0.213 1.213 22 H -0.201 1.201 23 C -0.185 4.185 24 C -0.202 4.202 25 H 0.099 0.901 26 H 0.083 0.917 27 H 0.120 0.880 28 H 0.065 0.935 29 H 0.092 0.908 30 H 0.148 0.852 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.148 0.852 34 H 0.100 0.900 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.077 0.923 41 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -7.409 4.725 10.304 13.543 hybrid contribution 0.569 -0.859 -1.529 1.844 sum -6.840 3.865 8.775 11.778 Atomic orbital electron populations 1.21802 0.89415 1.04516 1.03934 1.23280 0.97689 0.79379 1.01886 1.86477 1.23675 1.33663 1.84071 1.23660 0.80690 0.92659 0.71981 1.90676 1.61083 1.43839 1.44541 1.22449 0.93698 0.90208 1.00766 0.88509 1.22558 1.00225 0.85506 0.90972 1.87950 1.34326 1.29352 1.78076 1.22915 0.84677 1.03368 0.90378 1.22862 1.00696 0.88615 0.98256 1.62379 1.18654 1.24129 1.20024 1.19121 0.95532 0.91441 0.81947 0.98363 1.21335 0.95840 1.36936 1.00241 0.93012 1.25667 0.99961 0.96421 0.96848 1.70037 1.30658 1.45505 1.09966 0.85517 0.80279 0.77704 0.78185 1.19291 1.21341 1.20104 1.22090 0.95180 0.98449 1.02793 1.22040 0.97239 0.99813 1.01061 0.90125 0.91745 0.88000 0.93462 0.90838 0.85219 0.92528 0.92494 0.85216 0.89962 0.93043 0.93140 0.92891 0.92157 0.91703 0.92300 0.94797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 10.29 71.98 0.74 -1.96 16 2 C 0.05 1.49 6.19 71.98 0.45 1.93 16 3 O -0.36 -12.49 10.22 -51.39 -0.53 -13.01 16 4 C 0.47 19.08 5.70 71.24 0.41 19.49 16 5 O -0.51 -25.25 15.56 21.98 0.34 -24.90 16 6 C 0.04 1.43 1.97 44.18 0.09 1.52 16 7 H 0.10 3.44 4.09 -2.39 -0.01 3.43 16 8 C 0.08 2.51 6.28 72.02 0.45 2.97 16 9 O -0.38 -10.96 10.82 -148.98 -1.61 -12.57 16 10 C 0.06 1.76 7.01 72.01 0.50 2.27 16 11 C 0.02 0.82 4.30 86.31 0.37 1.19 16 12 N -0.53 -22.59 4.12 -853.61 -3.52 -26.11 16 13 C 0.23 11.61 1.44 44.17 0.06 11.67 16 14 H 0.00 -0.09 5.95 -2.39 -0.01 -0.10 16 15 C -0.50 -28.79 8.30 25.60 0.21 -28.58 16 16 H 0.05 2.99 7.81 -2.91 -0.02 2.96 16 17 C 0.01 0.52 5.30 84.65 0.45 0.96 16 18 N -0.92 -54.47 11.55 21.45 0.25 -54.22 16 19 Si 0.96 45.45 29.54 68.60 2.03 47.48 16 20 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 21 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 22 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 23 C -0.15 -6.79 4.73 30.59 0.14 -6.64 16 24 C -0.14 -5.50 8.07 71.98 0.58 -4.92 16 25 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.05 1.58 8.13 -2.39 -0.02 1.56 16 29 H 0.07 2.01 8.13 -2.39 -0.02 1.99 16 30 H 0.13 3.00 8.14 -2.39 -0.02 2.98 16 31 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.13 2.73 8.14 -2.39 -0.02 2.71 16 34 H 0.08 3.12 7.77 -2.39 -0.02 3.10 16 35 H 0.05 1.77 4.94 -2.39 -0.01 1.76 16 36 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 37 H 0.05 2.34 6.20 -2.38 -0.01 2.32 16 38 H 0.06 3.24 6.25 -2.39 -0.01 3.23 16 39 H 0.06 2.18 4.97 -2.39 -0.01 2.17 16 40 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.03 1.35 7.46 -2.38 -0.02 1.33 16 Total: -1.00 -69.77 317.85 2.44 -67.33 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: 1.02 Total: 16.11 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: 4.46 Total: -0.09 kcal Atomic # 7 Polarization: -77.07 SS G_CDS: -3.27 Total: -80.33 kcal Atomic # 8 Polarization: -48.69 SS G_CDS: -1.80 Total: -50.49 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -69.77 2.44 -67.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255179369.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.050 kcal (2) G-P(sol) polarization free energy of solvation -69.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds