Wall clock time and date at job start Mon Mar 30 2020 00:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99717 * 2 1 4 4 H 1.48502 * 109.47262 * 269.99578 * 3 2 1 5 5 H 1.48497 * 109.47610 * 29.99550 * 3 2 1 6 6 H 1.48508 * 109.47052 * 149.99936 * 3 2 1 7 7 C 1.37872 * 120.00369 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00305 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99841 * 0.02562 * 7 2 1 10 10 O 1.42894 * 110.28884 * 299.32979 * 9 7 2 11 11 C 1.54259 * 110.32077 * 61.45540 * 9 7 2 12 12 C 1.54372 * 105.06484 * 118.89682 * 11 9 7 13 13 N 1.48559 * 104.59295 * 23.85095 * 12 11 9 14 14 C 1.46907 * 111.00137 * 200.96696 * 13 12 11 15 15 C 1.53006 * 109.46633 * 290.12084 * 14 13 12 16 16 C 1.52997 * 109.46928 * 180.02562 * 15 14 13 17 17 O 1.42966 * 109.47239 * 295.00139 * 16 15 14 18 18 C 1.43093 * 113.77433 * 181.20745 * 17 16 15 19 19 C 1.53260 * 108.94073 * 57.96745 * 18 17 16 20 20 C 1.53262 * 108.84626 * 305.48007 * 19 18 17 21 21 O 1.42971 * 109.47130 * 175.00587 * 16 15 14 22 22 C 1.48566 * 104.22314 * 320.51744 * 13 12 11 23 23 H 0.97002 * 119.99844 * 0.02562 * 1 2 3 24 24 H 0.96694 * 114.00515 * 59.29596 * 10 9 7 25 25 H 1.09003 * 110.32550 * 237.79425 * 11 9 7 26 26 H 1.09004 * 110.32475 * 359.89326 * 11 9 7 27 27 H 1.09000 * 110.41920 * 142.62855 * 12 11 9 28 28 H 1.09001 * 110.41319 * 264.95665 * 12 11 9 29 29 H 1.08994 * 109.47489 * 50.11904 * 14 13 12 30 30 H 1.08996 * 109.47133 * 170.13022 * 14 13 12 31 31 H 1.08994 * 109.47037 * 300.00098 * 15 14 13 32 32 H 1.09008 * 109.46531 * 60.00193 * 15 14 13 33 33 H 1.09000 * 109.47264 * 55.00318 * 16 15 14 34 34 H 1.09007 * 109.55318 * 298.13305 * 18 17 16 35 35 H 1.08991 * 109.56385 * 177.81042 * 18 17 16 36 36 H 1.09003 * 109.57557 * 185.66956 * 19 18 17 37 37 H 1.08995 * 109.57661 * 65.28770 * 19 18 17 38 38 H 1.09001 * 109.56138 * 294.68546 * 20 19 18 39 39 H 1.09005 * 109.55684 * 174.36095 * 20 19 18 40 40 H 1.08998 * 110.41279 * 280.70992 * 22 13 12 41 41 H 1.08994 * 110.41123 * 158.25971 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 8 0.4343 -2.5998 1.1687 11 6 0.3851 -2.6178 -1.2705 12 6 0.9186 -3.8667 -2.0044 13 7 1.5555 -4.6832 -0.9392 14 6 2.5223 -5.6310 -1.5094 15 6 1.7747 -6.7168 -2.2861 16 6 2.7815 -7.7042 -2.8794 17 8 3.5908 -7.0346 -3.8494 18 6 4.5510 -7.8841 -4.4849 19 6 3.8163 -9.0477 -5.1596 20 6 2.9380 -9.7493 -4.1178 21 8 2.0803 -8.7813 -3.5057 22 6 2.2352 -3.6864 -0.0723 23 1 -0.4850 0.8401 -0.0004 24 1 -0.2187 -1.8918 1.2543 25 1 -0.6628 -2.7545 -1.0033 26 1 0.5036 -1.7312 -1.8935 27 1 0.0980 -4.4164 -2.4654 28 1 1.6535 -3.5805 -2.7569 29 1 3.1963 -5.1015 -2.1828 30 1 3.0980 -6.0903 -0.7059 31 1 1.1007 -7.2462 -1.6128 32 1 1.1989 -6.2574 -3.0896 33 1 3.4165 -8.0970 -2.0853 34 1 5.2440 -8.2735 -3.7390 35 1 5.1011 -7.3159 -5.2349 36 1 4.5426 -9.7547 -5.5607 37 1 3.1912 -8.6660 -5.9668 38 1 3.5699 -10.2093 -3.3581 39 1 2.3346 -10.5150 -4.6055 40 1 3.1774 -3.3720 -0.5211 41 1 2.4056 -4.1003 0.9214 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261458169.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:01 Heat of formation + Delta-G solvation = -166.931799 kcal Electronic energy + Delta-G solvation = -21674.910283 eV Core-core repulsion = 18360.511846 eV Total energy + Delta-G solvation = -3314.398437 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.98401 -40.03532 -36.98438 -36.67056 -34.51588 -34.16049 -32.51534 -30.23614 -29.63838 -26.96417 -26.77282 -25.15379 -23.06265 -22.11318 -21.57973 -21.18606 -19.00134 -18.33830 -17.59892 -17.26081 -17.03597 -16.78968 -16.02162 -15.79335 -15.70621 -15.43882 -15.24879 -14.76186 -14.29645 -14.22571 -13.90972 -13.60030 -13.32757 -13.19069 -12.87080 -12.50550 -12.46433 -12.41572 -12.32428 -12.16212 -12.06049 -11.99735 -11.84054 -11.58741 -11.03503 -10.98749 -10.66214 -10.59776 -10.09791 -9.36910 -8.20701 -6.37540 1.40471 1.42446 1.52239 2.37854 2.49825 2.66853 3.04136 3.26022 3.75089 3.80405 3.84007 3.96919 4.01121 4.11076 4.15380 4.26150 4.31600 4.40846 4.44715 4.52191 4.53552 4.67100 4.72462 4.80471 4.84269 4.89549 5.00522 5.10237 5.12628 5.18625 5.24954 5.48550 5.59610 5.72061 5.84801 5.91812 6.15643 6.20769 6.27057 6.69355 7.34334 7.49247 8.84546 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.036655 B = 0.003720 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.704729 B = 7524.747565 C = 7883.191315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.028 3.972 3 Si 0.960 3.040 4 H -0.275 1.275 5 H -0.280 1.280 6 H -0.272 1.272 7 C -0.563 4.563 8 H 0.054 0.946 9 C 0.235 3.765 10 O -0.595 6.595 11 C -0.112 4.112 12 C 0.042 3.958 13 N -0.514 5.514 14 C 0.055 3.945 15 C -0.091 4.091 16 C 0.254 3.746 17 O -0.414 6.414 18 C 0.044 3.956 19 C -0.187 4.187 20 C 0.046 3.954 21 O -0.414 6.414 22 C 0.059 3.941 23 H 0.269 0.731 24 H 0.373 0.627 25 H 0.040 0.960 26 H 0.047 0.953 27 H 0.081 0.919 28 H 0.038 0.962 29 H 0.036 0.964 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.108 0.892 36 H 0.113 0.887 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.113 0.887 40 H 0.046 0.954 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.922 -17.152 -9.341 21.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.172 4.172 3 Si 0.786 3.214 4 H -0.200 1.200 5 H -0.205 1.205 6 H -0.197 1.197 7 C -0.602 4.602 8 H 0.072 0.928 9 C 0.195 3.805 10 O -0.403 6.403 11 C -0.151 4.151 12 C -0.086 4.086 13 N -0.238 5.238 14 C -0.074 4.074 15 C -0.129 4.129 16 C 0.158 3.842 17 O -0.336 6.336 18 C -0.032 4.032 19 C -0.225 4.225 20 C -0.029 4.029 21 O -0.336 6.336 22 C -0.069 4.069 23 H 0.079 0.921 24 H 0.222 0.778 25 H 0.059 0.941 26 H 0.066 0.934 27 H 0.100 0.900 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.101 0.899 31 H 0.112 0.888 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.126 0.874 36 H 0.131 0.869 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.131 0.869 40 H 0.065 0.935 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.536 -17.730 -8.988 21.258 hybrid contribution 0.743 1.849 -0.533 2.063 sum 8.279 -15.881 -9.521 20.283 Atomic orbital electron populations 1.69798 1.06866 1.28179 1.50187 1.25709 0.95833 1.02312 0.93374 0.85528 0.78656 0.78996 0.78246 1.20019 1.20514 1.19665 1.21979 0.93480 0.92238 1.52473 0.92776 1.19501 0.87237 0.91478 0.82291 1.86116 1.53108 1.53911 1.47193 1.22643 0.98446 0.95461 0.98530 1.23048 0.98462 0.93868 0.93183 1.65345 1.27740 1.14455 1.16298 1.22096 0.93615 0.93887 0.97777 1.21308 0.97096 0.95178 0.99307 1.23292 0.88725 0.84579 0.87568 1.88148 1.50271 1.38066 1.57088 1.22923 0.90396 0.92508 0.97348 1.22765 1.00989 0.99334 0.99370 1.22936 0.93963 0.90697 0.95334 1.88090 1.35986 1.35651 1.73830 1.22893 0.95287 0.91671 0.97034 0.92135 0.77787 0.94113 0.93401 0.90038 0.94366 0.94527 0.89910 0.88844 0.91637 0.91161 0.91435 0.87426 0.86898 0.91197 0.91343 0.86883 0.93535 0.91219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.87 10.80 21.44 0.23 -49.64 16 2 C 0.03 1.52 5.01 84.65 0.42 1.95 16 3 Si 0.96 42.74 29.54 68.60 2.03 44.77 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 6 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.56 -31.06 8.08 25.60 0.21 -30.86 16 8 H 0.05 2.96 7.58 -2.91 -0.02 2.94 16 9 C 0.23 12.19 1.06 -10.64 -0.01 12.17 16 10 O -0.60 -32.83 12.95 -148.98 -1.93 -34.76 16 11 C -0.11 -5.47 5.56 31.49 0.18 -5.30 16 12 C 0.04 1.72 5.73 86.45 0.50 2.21 16 13 N -0.51 -20.34 5.37 -881.49 -4.73 -25.07 16 14 C 0.05 1.73 4.71 86.30 0.41 2.14 16 15 C -0.09 -2.57 5.35 30.60 0.16 -2.41 16 16 C 0.25 6.22 3.25 71.98 0.23 6.45 16 17 O -0.41 -10.62 10.07 -126.22 -1.27 -11.89 16 18 C 0.04 0.74 6.96 72.07 0.50 1.24 16 19 C -0.19 -2.55 6.35 30.77 0.20 -2.36 16 20 C 0.05 0.72 6.96 72.07 0.50 1.22 16 21 O -0.41 -10.02 10.54 -126.22 -1.33 -11.35 16 22 C 0.06 2.64 5.76 86.45 0.50 3.14 16 23 H 0.27 13.99 8.31 -92.71 -0.77 13.22 16 24 H 0.37 20.91 7.29 -74.06 -0.54 20.36 16 25 H 0.04 2.05 7.98 -2.39 -0.02 2.03 16 26 H 0.05 2.51 7.23 -2.38 -0.02 2.49 16 27 H 0.08 3.02 7.76 -2.39 -0.02 3.00 16 28 H 0.04 1.52 7.83 -2.39 -0.02 1.50 16 29 H 0.04 1.21 7.56 -2.39 -0.02 1.19 16 30 H 0.08 2.37 8.13 -2.39 -0.02 2.35 16 31 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 32 H 0.06 2.01 7.26 -2.38 -0.02 1.99 16 33 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 35 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.11 1.36 8.14 -2.38 -0.02 1.34 16 40 H 0.05 2.04 7.56 -2.39 -0.02 2.03 16 41 H 0.07 3.12 8.08 -2.39 -0.02 3.10 16 Total: -1.00 -62.70 323.08 -2.75 -65.45 By element: Atomic # 1 Polarization: 32.42 SS G_CDS: 0.47 Total: 32.89 kcal Atomic # 6 Polarization: -14.19 SS G_CDS: 3.79 Total: -10.39 kcal Atomic # 7 Polarization: -70.21 SS G_CDS: -4.50 Total: -74.71 kcal Atomic # 8 Polarization: -53.47 SS G_CDS: -4.53 Total: -58.00 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -62.70 -2.75 -65.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261458169.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.481 kcal (2) G-P(sol) polarization free energy of solvation -62.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds