Wall clock time and date at job start Mon Mar 30 2020 00:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00516 * 2 1 4 4 H 1.48497 * 109.47360 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46927 * 299.99791 * 3 2 1 6 6 H 1.48498 * 109.47235 * 59.99791 * 3 2 1 7 7 C 1.37884 * 119.99669 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99839 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99932 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47062 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47014 * 179.97438 * 10 9 7 12 12 N 1.46500 * 109.47205 * 180.02562 * 11 10 9 13 13 C 1.34770 * 120.00329 * 180.02562 * 12 11 10 14 14 O 1.21285 * 119.99790 * 0.02562 * 13 12 11 15 15 C 1.50698 * 120.00386 * 179.97438 * 13 12 11 16 16 C 1.52999 * 109.47648 * 180.02562 * 15 13 12 17 17 O 1.42903 * 109.53569 * 300.00068 * 16 15 13 18 18 C 1.53176 * 109.54361 * 60.17289 * 16 15 13 19 19 C 1.53283 * 109.06164 * 176.85759 * 18 16 15 20 20 O 1.42906 * 109.45968 * 302.44581 * 19 18 16 21 21 C 1.42907 * 114.09476 * 61.16231 * 20 19 18 22 22 C 1.53088 * 109.41256 * 298.83610 * 21 20 19 23 23 H 0.97004 * 119.99647 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.47158 * 59.99445 * 9 7 2 25 25 H 1.08998 * 109.46891 * 299.99834 * 9 7 2 26 26 H 1.08997 * 109.47252 * 59.99913 * 10 9 7 27 27 H 1.08998 * 109.47467 * 299.99892 * 10 9 7 28 28 H 1.08997 * 109.47006 * 59.99978 * 11 10 9 29 29 H 1.08994 * 109.47328 * 299.99898 * 11 10 9 30 30 H 0.97009 * 119.99905 * 0.02562 * 12 11 10 31 31 H 1.09005 * 109.47006 * 59.99756 * 15 13 12 32 32 H 1.09007 * 109.47091 * 300.00164 * 15 13 12 33 33 H 0.96700 * 114.00311 * 60.00082 * 17 16 15 34 34 H 1.08994 * 109.52298 * 296.84914 * 18 16 15 35 35 H 1.08998 * 109.51787 * 57.03674 * 18 16 15 36 36 H 1.09001 * 109.45544 * 182.45198 * 19 18 16 37 37 H 1.08994 * 109.46841 * 62.45120 * 19 18 16 38 38 H 1.09002 * 109.47775 * 178.85948 * 21 20 19 39 39 H 1.08993 * 109.48865 * 58.83012 * 21 20 19 40 40 H 1.08999 * 109.52841 * 297.70348 * 22 21 20 41 41 H 1.09001 * 109.57260 * 177.54780 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8906 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 6 1.4799 -4.9871 0.0012 12 7 2.4318 -6.1007 0.0018 13 6 1.9825 -7.3713 0.0019 14 8 0.7901 -7.5929 0.0010 15 6 2.9617 -8.5169 0.0020 16 6 2.1967 -9.8419 0.0014 17 8 1.3742 -9.9193 1.1675 18 6 1.3191 -9.9264 -1.2511 19 6 0.6186 -11.2895 -1.2806 20 8 1.5987 -12.3291 -1.2518 21 6 2.4175 -12.3266 -0.0806 22 6 3.1905 -11.0075 -0.0029 23 1 -0.4850 0.8401 -0.0004 24 1 0.6245 -2.5571 -0.8896 25 1 0.6239 -2.5567 0.8903 26 1 2.8717 -3.6045 0.8905 27 1 2.8717 -3.6045 -0.8894 28 1 0.8530 -5.0451 -0.8886 29 1 0.8536 -5.0446 0.8913 30 1 3.3856 -5.9235 0.0021 31 1 3.5884 -8.4591 0.8919 32 1 3.5884 -8.4592 -0.8881 33 1 0.7183 -9.2118 1.2339 34 1 0.5734 -9.1317 -1.2278 35 1 1.9410 -9.8175 -2.1396 36 1 0.0262 -11.3736 -2.1917 37 1 -0.0343 -11.3812 -0.4127 38 1 3.1211 -13.1579 -0.1272 39 1 1.7884 -12.4319 0.8032 40 1 3.8502 -10.9204 -0.8662 41 1 3.7828 -10.9846 0.9118 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262170276.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:15 Heat of formation + Delta-G solvation = -161.057712 kcal Electronic energy + Delta-G solvation = -21010.599486 eV Core-core repulsion = 17696.455769 eV Total energy + Delta-G solvation = -3314.143718 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.70475 -39.05237 -36.62236 -35.40348 -33.45164 -32.76285 -31.38555 -31.28392 -29.36752 -26.65019 -24.10808 -23.77230 -22.73142 -20.87921 -20.32344 -19.98821 -17.09258 -16.80000 -16.64611 -16.21606 -16.11906 -15.78259 -15.49531 -14.97180 -14.60492 -14.49594 -14.37174 -13.70895 -13.27468 -13.12252 -12.41900 -12.32521 -12.29629 -12.09932 -11.89430 -11.74384 -11.45777 -11.05190 -10.96415 -10.85132 -10.76348 -10.61094 -10.21890 -9.94930 -9.87816 -9.61753 -9.36382 -9.15326 -8.92300 -8.42608 -6.06954 -4.10259 2.55288 3.21961 3.26447 3.34250 3.37608 3.71940 4.02257 4.39304 4.39700 4.46128 4.56091 4.80057 4.92475 5.09917 5.12237 5.18986 5.29073 5.35155 5.42786 5.51199 5.53492 5.63790 5.64967 5.67829 5.79154 6.00330 6.03619 6.06358 6.37284 6.50490 6.71956 6.91886 7.03409 7.52556 7.57473 7.60915 7.69085 7.91399 8.21138 8.32578 8.96573 9.54360 11.04371 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.057567 B = 0.002712 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.270900 B =10323.893926 C =10512.687786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.024 3.976 10 C -0.121 4.121 11 C 0.114 3.886 12 N -0.721 5.721 13 C 0.512 3.488 14 O -0.549 6.549 15 C -0.172 4.172 16 C 0.153 3.847 17 O -0.564 6.564 18 C -0.192 4.192 19 C 0.067 3.933 20 O -0.388 6.388 21 C 0.065 3.935 22 C -0.142 4.142 23 H 0.261 0.739 24 H 0.019 0.981 25 H 0.019 0.981 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.400 0.600 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.389 0.611 34 H 0.106 0.894 35 H 0.071 0.929 36 H 0.091 0.909 37 H 0.056 0.944 38 H 0.091 0.909 39 H 0.059 0.941 40 H 0.083 0.917 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.987 -21.997 -0.692 23.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.159 4.159 11 C -0.008 4.008 12 N -0.371 5.371 13 C 0.299 3.701 14 O -0.430 6.430 15 C -0.213 4.213 16 C 0.111 3.889 17 O -0.375 6.375 18 C -0.230 4.230 19 C -0.010 4.010 20 O -0.307 6.307 21 C -0.012 4.012 22 C -0.179 4.179 23 H 0.071 0.929 24 H 0.037 0.963 25 H 0.037 0.963 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.234 0.766 31 H 0.120 0.880 32 H 0.119 0.881 33 H 0.242 0.758 34 H 0.124 0.876 35 H 0.090 0.910 36 H 0.109 0.891 37 H 0.074 0.926 38 H 0.109 0.891 39 H 0.077 0.923 40 H 0.101 0.899 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 6.354 -22.652 -0.727 23.538 hybrid contribution 0.648 1.994 0.071 2.098 sum 7.002 -20.658 -0.656 21.823 Atomic orbital electron populations 1.69973 1.06077 1.26647 1.50543 1.25037 0.94867 0.99362 0.95219 0.86520 0.80030 0.83698 0.77649 1.19757 1.20959 1.20960 1.21232 0.93021 0.90916 1.50967 0.92597 1.19030 0.93830 0.90876 0.97655 1.21894 0.99790 0.93340 1.00898 1.21691 0.91887 0.85146 1.02092 1.46270 1.11010 1.06020 1.73760 1.20572 0.89555 0.84206 0.75783 1.90539 1.17116 1.84408 1.50922 1.22480 0.99356 0.94126 1.05291 1.20770 0.90065 0.92013 0.86028 1.86363 1.51986 1.56096 1.43033 1.23136 1.01837 1.00071 0.97968 1.22533 0.90299 0.86017 1.02140 1.87889 1.48897 1.51941 1.41969 1.22474 0.93581 0.96504 0.88610 1.22197 0.97636 0.94697 1.03400 0.92930 0.96289 0.96265 0.92707 0.92718 0.91642 0.91612 0.76632 0.88029 0.88063 0.75796 0.87551 0.90987 0.89118 0.92565 0.89109 0.92297 0.89860 0.90105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.52 13.29 55.43 0.74 -25.78 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.23 29.54 -169.99 -5.02 16.20 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.52 -14.38 9.11 -34.44 -0.31 -14.70 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.12 -2.27 5.27 -26.73 -0.14 -2.41 16 11 C 0.11 1.88 5.67 -4.04 -0.02 1.86 16 12 N -0.72 -9.21 5.56 -60.30 -0.33 -9.54 16 13 C 0.51 6.46 7.35 -10.99 -0.08 6.37 16 14 O -0.55 -8.45 11.72 -12.67 -0.15 -8.60 16 15 C -0.17 -1.58 4.99 -27.88 -0.14 -1.72 16 16 C 0.15 1.56 0.69 -90.44 -0.06 1.50 16 17 O -0.56 -6.82 11.91 -53.45 -0.64 -7.45 16 18 C -0.19 -2.08 4.78 -26.49 -0.13 -2.20 16 19 C 0.07 0.71 6.70 37.30 0.25 0.96 16 20 O -0.39 -4.39 10.77 -35.23 -0.38 -4.77 16 21 C 0.07 0.60 6.69 37.20 0.25 0.85 16 22 C -0.14 -1.20 5.15 -26.60 -0.14 -1.34 16 23 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 24 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 28 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 29 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.40 4.06 8.47 -40.82 -0.35 3.71 16 31 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.39 4.92 6.55 45.56 0.30 5.22 16 34 H 0.11 1.34 5.62 -51.93 -0.29 1.05 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.06 0.62 7.82 -51.93 -0.41 0.21 16 38 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.59 7.82 -51.93 -0.41 0.18 16 40 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 329.09 15.07 4.96 4.96 Total: -1.00 -31.39 329.09 -7.77 -39.16 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -6.19 Total: 4.70 kcal Atomic # 6 Polarization: -8.12 SS G_CDS: -0.76 Total: -8.88 kcal Atomic # 7 Polarization: -35.72 SS G_CDS: 0.40 Total: -35.32 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: -1.16 Total: -20.82 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.39 -7.77 -39.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262170276.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.894 kcal (2) G-P(sol) polarization free energy of solvation -31.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds