Wall clock time and date at job start Mon Mar 30 2020 00:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00516 * 2 1 4 4 H 1.48497 * 109.47360 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46927 * 299.99791 * 3 2 1 6 6 H 1.48498 * 109.47235 * 59.99791 * 3 2 1 7 7 C 1.37884 * 119.99669 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99839 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99932 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47062 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47014 * 179.97438 * 10 9 7 12 12 N 1.46500 * 109.47205 * 180.02562 * 11 10 9 13 13 C 1.34770 * 120.00329 * 180.02562 * 12 11 10 14 14 O 1.21285 * 119.99790 * 0.02562 * 13 12 11 15 15 C 1.50698 * 120.00386 * 179.97438 * 13 12 11 16 16 C 1.52999 * 109.47648 * 180.02562 * 15 13 12 17 17 O 1.42903 * 109.53569 * 300.00068 * 16 15 13 18 18 C 1.53176 * 109.54361 * 60.17289 * 16 15 13 19 19 C 1.53283 * 109.06164 * 176.85759 * 18 16 15 20 20 O 1.42906 * 109.45968 * 302.44581 * 19 18 16 21 21 C 1.42907 * 114.09476 * 61.16231 * 20 19 18 22 22 C 1.53088 * 109.41256 * 298.83610 * 21 20 19 23 23 H 0.97004 * 119.99647 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.47158 * 59.99445 * 9 7 2 25 25 H 1.08998 * 109.46891 * 299.99834 * 9 7 2 26 26 H 1.08997 * 109.47252 * 59.99913 * 10 9 7 27 27 H 1.08998 * 109.47467 * 299.99892 * 10 9 7 28 28 H 1.08997 * 109.47006 * 59.99978 * 11 10 9 29 29 H 1.08994 * 109.47328 * 299.99898 * 11 10 9 30 30 H 0.97009 * 119.99905 * 0.02562 * 12 11 10 31 31 H 1.09005 * 109.47006 * 59.99756 * 15 13 12 32 32 H 1.09007 * 109.47091 * 300.00164 * 15 13 12 33 33 H 0.96700 * 114.00311 * 60.00082 * 17 16 15 34 34 H 1.08994 * 109.52298 * 296.84914 * 18 16 15 35 35 H 1.08998 * 109.51787 * 57.03674 * 18 16 15 36 36 H 1.09001 * 109.45544 * 182.45198 * 19 18 16 37 37 H 1.08994 * 109.46841 * 62.45120 * 19 18 16 38 38 H 1.09002 * 109.47775 * 178.85948 * 21 20 19 39 39 H 1.08993 * 109.48865 * 58.83012 * 21 20 19 40 40 H 1.08999 * 109.52841 * 297.70348 * 22 21 20 41 41 H 1.09001 * 109.57260 * 177.54780 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8906 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 6 1.4799 -4.9871 0.0012 12 7 2.4318 -6.1007 0.0018 13 6 1.9825 -7.3713 0.0019 14 8 0.7901 -7.5929 0.0010 15 6 2.9617 -8.5169 0.0020 16 6 2.1967 -9.8419 0.0014 17 8 1.3742 -9.9193 1.1675 18 6 1.3191 -9.9264 -1.2511 19 6 0.6186 -11.2895 -1.2806 20 8 1.5987 -12.3291 -1.2518 21 6 2.4175 -12.3266 -0.0806 22 6 3.1905 -11.0075 -0.0029 23 1 -0.4850 0.8401 -0.0004 24 1 0.6245 -2.5571 -0.8896 25 1 0.6239 -2.5567 0.8903 26 1 2.8717 -3.6045 0.8905 27 1 2.8717 -3.6045 -0.8894 28 1 0.8530 -5.0451 -0.8886 29 1 0.8536 -5.0446 0.8913 30 1 3.3856 -5.9235 0.0021 31 1 3.5884 -8.4591 0.8919 32 1 3.5884 -8.4592 -0.8881 33 1 0.7183 -9.2118 1.2339 34 1 0.5734 -9.1317 -1.2278 35 1 1.9410 -9.8175 -2.1396 36 1 0.0262 -11.3736 -2.1917 37 1 -0.0343 -11.3812 -0.4127 38 1 3.1211 -13.1579 -0.1272 39 1 1.7884 -12.4319 0.8032 40 1 3.8502 -10.9204 -0.8662 41 1 3.7828 -10.9846 0.9118 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262170276.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:14 Heat of formation + Delta-G solvation = -183.886112 kcal Electronic energy + Delta-G solvation = -21011.589400 eV Core-core repulsion = 17696.455769 eV Total energy + Delta-G solvation = -3315.133631 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.60946 -39.99213 -37.58360 -36.74206 -35.21052 -33.69998 -32.99811 -32.04345 -30.38434 -28.31010 -25.35547 -24.65896 -24.02024 -22.33592 -21.32241 -21.03676 -18.58410 -18.04401 -17.59851 -17.30436 -16.99291 -16.81973 -16.67563 -16.36812 -15.93476 -15.58975 -15.51951 -14.67501 -14.42335 -14.13346 -13.90582 -13.76021 -13.60171 -13.11498 -12.93749 -12.87388 -12.72202 -12.56781 -12.36049 -12.26553 -11.85037 -11.69126 -11.67865 -11.49021 -11.22169 -11.03343 -10.69181 -10.57697 -10.32579 -10.08584 -8.21293 -6.32700 1.40895 1.41206 1.54198 1.57003 2.17909 2.41495 2.96272 3.12805 3.23360 3.57335 3.67806 3.80655 4.03776 4.09556 4.19945 4.21015 4.30848 4.46130 4.49739 4.54117 4.64317 4.73120 4.77662 4.80374 4.92279 4.93450 4.98527 5.08297 5.15469 5.17400 5.27340 5.45061 5.52101 5.69204 5.82911 6.20671 6.25313 6.54009 6.67805 6.85396 7.24323 7.37246 8.91010 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.057567 B = 0.002712 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.270900 B =10323.893926 C =10512.687786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.967 3.033 4 H -0.258 1.258 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.540 4.540 8 H 0.066 0.934 9 C 0.023 3.977 10 C -0.103 4.103 11 C 0.129 3.871 12 N -0.713 5.713 13 C 0.508 3.492 14 O -0.581 6.581 15 C -0.161 4.161 16 C 0.144 3.856 17 O -0.575 6.575 18 C -0.189 4.189 19 C 0.066 3.934 20 O -0.401 6.401 21 C 0.058 3.942 22 C -0.137 4.137 23 H 0.263 0.737 24 H -0.009 1.009 25 H -0.009 1.009 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.416 0.584 31 H 0.123 0.877 32 H 0.130 0.870 33 H 0.383 0.617 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.098 0.902 37 H 0.045 0.955 38 H 0.113 0.887 39 H 0.046 0.954 40 H 0.101 0.899 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.903 -22.492 -0.858 24.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.791 3.209 4 H -0.182 1.182 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.578 4.578 8 H 0.084 0.916 9 C -0.015 4.015 10 C -0.140 4.140 11 C 0.005 3.995 12 N -0.364 5.364 13 C 0.297 3.703 14 O -0.463 6.463 15 C -0.200 4.200 16 C 0.103 3.897 17 O -0.386 6.386 18 C -0.227 4.227 19 C -0.010 4.010 20 O -0.320 6.320 21 C -0.018 4.018 22 C -0.175 4.175 23 H 0.072 0.928 24 H 0.010 0.990 25 H 0.010 0.990 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.253 0.747 31 H 0.141 0.859 32 H 0.148 0.852 33 H 0.235 0.765 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.117 0.883 37 H 0.063 0.937 38 H 0.131 0.869 39 H 0.064 0.936 40 H 0.120 0.880 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 9.316 -23.172 -0.892 24.990 hybrid contribution -0.309 2.082 0.123 2.109 sum 9.006 -21.090 -0.769 22.945 Atomic orbital electron populations 1.70115 1.07952 1.27748 1.51768 1.26027 0.95744 1.03583 0.94801 0.85371 0.79223 0.78655 0.77625 1.18163 1.20585 1.20611 1.21719 0.93749 0.92044 1.50319 0.91551 1.18947 0.94466 0.93046 0.95013 1.21593 0.98409 0.91968 1.02065 1.21214 0.91994 0.85590 1.00680 1.46038 1.11235 1.05196 1.73945 1.21254 0.89794 0.84638 0.74624 1.90549 1.18894 1.84820 1.51999 1.22481 0.98495 0.91391 1.07661 1.21017 0.90207 0.93492 0.84980 1.86360 1.52173 1.56002 1.44017 1.23064 1.01595 0.99178 0.98861 1.22528 0.90313 0.86122 1.02083 1.87872 1.49186 1.52079 1.42893 1.22657 0.93650 0.98041 0.87466 1.22225 0.97207 0.93069 1.04963 0.92805 0.99010 0.99015 0.91449 0.91404 0.93193 0.93183 0.74702 0.85886 0.85193 0.76459 0.89754 0.90102 0.88346 0.93696 0.86866 0.93586 0.88027 0.88670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.69 13.29 21.45 0.28 -56.41 16 2 C 0.00 -0.22 5.46 84.66 0.46 0.24 16 3 Si 0.97 43.29 29.54 68.60 2.03 45.32 16 4 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 5 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 6 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 7 C -0.54 -29.71 9.11 25.60 0.23 -29.48 16 8 H 0.07 3.43 7.74 -2.91 -0.02 3.41 16 9 C 0.02 1.17 4.97 29.85 0.15 1.32 16 10 C -0.10 -3.77 5.27 30.59 0.16 -3.61 16 11 C 0.13 4.24 5.67 86.38 0.49 4.73 16 12 N -0.71 -16.96 5.56 -463.08 -2.57 -19.53 16 13 C 0.51 12.08 7.35 87.66 0.64 12.72 16 14 O -0.58 -17.93 11.72 14.37 0.17 -17.76 16 15 C -0.16 -2.45 4.99 29.85 0.15 -2.30 16 16 C 0.14 2.67 0.69 -10.68 -0.01 2.66 16 17 O -0.57 -13.55 11.91 -131.56 -1.57 -15.12 16 18 C -0.19 -3.91 4.78 30.75 0.15 -3.76 16 19 C 0.07 1.38 6.70 72.08 0.48 1.86 16 20 O -0.40 -8.58 10.77 -148.98 -1.60 -10.18 16 21 C 0.06 0.97 6.69 72.01 0.48 1.45 16 22 C -0.14 -1.92 5.15 30.68 0.16 -1.76 16 23 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 24 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 25 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 26 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 27 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 28 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.05 1.79 8.14 -2.39 -0.02 1.78 16 30 H 0.42 7.18 8.47 -92.70 -0.79 6.40 16 31 H 0.12 1.44 8.14 -2.38 -0.02 1.42 16 32 H 0.13 1.30 8.14 -2.38 -0.02 1.28 16 33 H 0.38 9.87 6.55 -74.06 -0.48 9.38 16 34 H 0.08 2.16 5.62 -2.39 -0.01 2.14 16 35 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.10 1.82 8.14 -2.39 -0.02 1.81 16 37 H 0.04 1.02 7.82 -2.39 -0.02 1.00 16 38 H 0.11 1.34 8.14 -2.39 -0.02 1.33 16 39 H 0.05 0.88 7.82 -2.39 -0.02 0.86 16 40 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -69.01 329.09 0.04 -68.97 By element: Atomic # 1 Polarization: 20.89 SS G_CDS: -0.25 Total: 20.65 kcal Atomic # 6 Polarization: -19.48 SS G_CDS: 3.55 Total: -15.93 kcal Atomic # 7 Polarization: -73.65 SS G_CDS: -2.29 Total: -75.94 kcal Atomic # 8 Polarization: -40.06 SS G_CDS: -3.00 Total: -43.06 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -69.01 0.04 -68.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262170276.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.921 kcal (2) G-P(sol) polarization free energy of solvation -69.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds