Wall clock time and date at job start Mon Mar 30 2020 01:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47110 * 2 1 4 4 C 1.53002 * 109.47249 * 184.67016 * 3 2 1 5 5 H 1.09000 * 109.46876 * 54.10631 * 4 3 2 6 6 C 1.50699 * 109.47331 * 174.10978 * 4 3 2 7 7 O 1.20820 * 120.00557 * 119.99921 * 6 4 3 8 8 O 1.34227 * 119.99881 * 299.99941 * 6 4 3 9 9 C 1.45206 * 117.00277 * 179.97438 * 8 6 4 10 10 C 1.53003 * 109.47097 * 179.97438 * 9 8 6 11 11 N 1.46897 * 109.46924 * 294.10705 * 4 3 2 12 12 C 1.47489 * 111.00091 * 178.47488 * 11 4 3 13 13 C 1.53509 * 87.93218 * 221.29842 * 12 11 4 14 14 O 1.42904 * 114.16788 * 272.37480 * 13 12 11 15 15 C 1.50699 * 114.16809 * 139.67395 * 13 12 11 16 16 H 1.07997 * 120.00467 * 359.97438 * 15 13 12 17 17 C 1.37881 * 119.99897 * 180.02562 * 15 13 12 18 18 N 1.31515 * 119.99766 * 359.97438 * 17 15 13 19 19 Si 1.86797 * 120.00231 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.47008 * 59.99593 * 19 17 15 21 21 H 1.48491 * 109.47358 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47228 * 300.00094 * 19 17 15 23 23 C 1.47482 * 111.00030 * 82.50919 * 11 4 3 24 24 H 1.08997 * 109.46889 * 59.99894 * 1 2 3 25 25 H 1.08994 * 109.46957 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.46862 * 299.99981 * 1 2 3 27 27 H 1.08998 * 109.47202 * 240.00482 * 2 1 3 28 28 H 1.09000 * 109.47379 * 120.00226 * 2 1 3 29 29 H 1.09001 * 109.47039 * 64.67267 * 3 2 1 30 30 H 1.08996 * 109.47374 * 304.66908 * 3 2 1 31 31 H 1.08991 * 109.47067 * 300.00003 * 9 8 6 32 32 H 1.08997 * 109.46499 * 60.00055 * 9 8 6 33 33 H 1.08992 * 109.47084 * 300.00491 * 10 9 8 34 34 H 1.09007 * 109.46676 * 60.00539 * 10 9 8 35 35 H 1.08994 * 109.46719 * 179.97438 * 10 9 8 36 36 H 1.09003 * 113.47357 * 336.06414 * 12 11 4 37 37 H 1.09003 * 113.47351 * 106.52744 * 12 11 4 38 38 H 0.96706 * 113.99369 * 180.02562 * 14 13 12 39 39 H 0.97003 * 119.99644 * 180.02562 * 18 17 15 40 40 H 1.09003 * 113.47261 * 253.46789 * 23 11 4 41 41 H 1.08994 * 113.47920 * 23.93113 * 23 11 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5655 1.4441 -0.1174 5 1 3.8632 0.8648 -0.9915 6 6 4.0566 2.8614 -0.2630 7 8 4.8158 3.3247 0.5548 8 8 3.6507 3.6091 -1.3012 9 6 4.1636 4.9654 -1.3774 10 6 3.5950 5.6567 -2.6182 11 7 4.1501 0.8449 1.0896 12 6 5.6213 0.7963 0.9962 13 6 5.5586 -0.6071 1.6151 14 8 5.5737 -0.6177 3.0440 15 6 6.5148 -1.5961 0.9996 16 1 7.1652 -1.2889 0.1941 17 6 6.5584 -2.8935 1.4642 18 7 5.7660 -3.2678 2.4448 19 14 7.7430 -4.1196 0.7008 20 1 9.1358 -3.6318 0.8673 21 1 7.5960 -5.4350 1.3740 22 1 7.4397 -4.2665 -0.7454 23 6 4.1518 -0.6273 1.0011 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 1.8933 -0.5137 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.7466 1.9316 0.9289 30 1 1.6100 1.9799 -0.8452 31 1 3.8664 5.5168 -0.4854 32 1 5.2513 4.9392 -1.4428 33 1 3.8925 5.1051 -3.5099 34 1 2.5072 5.6828 -2.5531 35 1 3.9797 6.6750 -2.6750 36 1 5.9917 0.8027 -0.0289 37 1 6.1210 1.5286 1.6303 38 1 5.5346 -1.5030 3.4312 39 1 5.7970 -4.1805 2.7719 40 1 3.4063 -1.1015 1.6394 41 1 4.1301 -1.0008 -0.0226 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001307711318.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:36 Heat of formation + Delta-G solvation = -106.134256 kcal Electronic energy + Delta-G solvation = -22095.656770 eV Core-core repulsion = 18783.894712 eV Total energy + Delta-G solvation = -3311.762058 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.61931 -39.05659 -36.34310 -35.46503 -33.64659 -32.04937 -31.86397 -30.30569 -26.84436 -25.64251 -24.41222 -23.83741 -22.38804 -21.11352 -20.09033 -18.61356 -17.49075 -17.26258 -16.46397 -16.03630 -15.67527 -15.06788 -14.40623 -14.25859 -14.01942 -13.69715 -13.45497 -13.09009 -12.95458 -12.66740 -12.35516 -12.08315 -11.90313 -11.74806 -11.61613 -11.47491 -11.40042 -11.10154 -11.01428 -10.93814 -10.54874 -10.48652 -10.47139 -10.16044 -10.08535 -9.73851 -9.22919 -8.64855 -8.18714 -7.90668 -6.27355 -4.37177 2.48518 2.75570 3.20760 3.26407 3.29024 4.24436 4.71220 4.75665 4.83751 4.92785 4.94690 5.06128 5.18587 5.22707 5.31395 5.48776 5.60139 5.65420 5.70812 5.74953 5.82854 5.94793 6.00875 6.05360 6.09152 6.23084 6.29657 6.31881 6.46347 6.54794 6.58086 6.85199 7.00984 7.13285 7.33293 7.75781 7.82598 8.00129 8.09017 8.64879 9.32963 9.70762 10.78502 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.019017 B = 0.005361 C = 0.004707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.990928 B = 5221.338344 C = 5947.601791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.133 4.133 3 C -0.098 4.098 4 C 0.056 3.944 5 H 0.080 0.920 6 C 0.464 3.536 7 O -0.486 6.486 8 O -0.363 6.363 9 C 0.060 3.940 10 C -0.150 4.150 11 N -0.450 5.450 12 C 0.013 3.987 13 C 0.246 3.754 14 O -0.568 6.568 15 C -0.535 4.535 16 H 0.065 0.935 17 C 0.072 3.928 18 N -0.897 5.897 19 Si 0.904 3.096 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.275 1.275 23 C -0.016 4.016 24 H 0.049 0.951 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.083 0.917 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.057 0.943 37 H 0.079 0.921 38 H 0.389 0.611 39 H 0.272 0.728 40 H 0.076 0.924 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.740 9.473 -8.698 15.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.170 4.170 3 C -0.136 4.136 4 C -0.054 4.054 5 H 0.097 0.903 6 C 0.305 3.695 7 O -0.371 6.371 8 O -0.281 6.281 9 C -0.014 4.014 10 C -0.208 4.208 11 N -0.174 5.174 12 C -0.116 4.116 13 C 0.204 3.796 14 O -0.380 6.380 15 C -0.573 4.573 16 H 0.084 0.916 17 C -0.130 4.130 18 N -0.538 5.538 19 Si 0.731 3.269 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.201 1.201 23 C -0.144 4.144 24 H 0.068 0.932 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.101 0.899 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.076 0.924 37 H 0.098 0.902 38 H 0.245 0.755 39 H 0.083 0.917 40 H 0.095 0.905 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.877 10.507 -7.885 15.317 hybrid contribution 0.968 -1.434 -1.135 2.069 sum -6.909 9.073 -9.020 14.540 Atomic orbital electron populations 1.21742 0.96057 1.01418 1.01308 1.21754 0.95504 0.96204 1.03517 1.21480 0.91094 0.98330 1.02679 1.22122 0.97723 0.88480 0.97077 0.90262 1.23808 0.78516 0.88804 0.78362 1.90669 1.32557 1.72636 1.41246 1.86502 1.67820 1.26194 1.47570 1.22955 0.99013 0.79879 0.99514 1.21788 1.02160 0.99934 0.96875 1.69159 1.09416 1.10192 1.28666 1.24003 0.88262 0.99995 0.99336 1.19395 0.89792 0.89978 0.80427 1.86065 1.96406 1.36430 1.19063 1.21534 1.21967 0.94806 1.19006 0.91639 1.25051 0.95135 0.98231 0.94563 1.69289 1.38136 1.19442 1.26936 0.86456 0.81307 0.79783 0.79330 1.19941 1.20974 1.20055 1.24857 1.03191 0.85904 1.00492 0.93211 0.92802 0.92873 0.92116 0.89882 0.90887 0.91172 0.91411 0.91423 0.91551 0.91575 0.90472 0.92433 0.90247 0.75509 0.91746 0.90524 0.92006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.91 37.16 0.37 -1.37 16 2 C -0.13 -1.89 4.94 -26.73 -0.13 -2.02 16 3 C -0.10 -1.45 4.86 -26.73 -0.13 -1.58 16 4 C 0.06 0.99 1.87 -68.87 -0.13 0.86 16 5 H 0.08 1.35 7.54 -51.93 -0.39 0.95 16 6 C 0.46 8.24 7.00 36.01 0.25 8.49 16 7 O -0.49 -10.06 14.57 -18.75 -0.27 -10.33 16 8 O -0.36 -5.40 10.01 -39.25 -0.39 -5.79 16 9 C 0.06 0.72 6.19 37.16 0.23 0.95 16 10 C -0.15 -1.26 10.29 37.16 0.38 -0.88 16 11 N -0.45 -9.61 5.91 -237.99 -1.41 -11.01 16 12 C 0.01 0.29 5.42 -7.55 -0.04 0.25 16 13 C 0.25 6.30 1.57 -91.25 -0.14 6.16 16 14 O -0.57 -15.67 13.54 -35.23 -0.48 -16.14 16 15 C -0.53 -14.26 8.69 -34.44 -0.30 -14.56 16 16 H 0.07 1.71 7.81 -52.49 -0.41 1.30 16 17 C 0.07 1.89 5.40 -17.82 -0.10 1.79 16 18 N -0.90 -23.79 11.02 55.43 0.61 -23.18 16 19 Si 0.90 20.23 29.54 -169.99 -5.02 15.21 16 20 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 21 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 22 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 23 C -0.02 -0.35 4.95 -7.55 -0.04 -0.39 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.05 0.61 8.14 -51.92 -0.42 0.19 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.08 1.37 5.36 -51.93 -0.28 1.10 16 29 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.07 0.90 7.97 -51.93 -0.41 0.49 16 31 H 0.07 0.80 8.13 -51.93 -0.42 0.38 16 32 H 0.07 0.82 8.13 -51.93 -0.42 0.39 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 35 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 1.28 7.85 -51.93 -0.41 0.87 16 37 H 0.08 1.97 7.75 -51.93 -0.40 1.57 16 38 H 0.39 10.79 6.34 45.56 0.29 11.07 16 39 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 40 H 0.08 1.76 6.83 -51.93 -0.35 1.41 16 41 H 0.06 1.33 7.46 -51.93 -0.39 0.94 16 LS Contribution 331.61 15.07 5.00 5.00 Total: -1.00 -29.12 331.61 -7.86 -36.98 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: -6.12 Total: 11.57 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: 0.23 Total: -2.30 kcal Atomic # 7 Polarization: -33.40 SS G_CDS: -0.80 Total: -34.19 kcal Atomic # 8 Polarization: -31.12 SS G_CDS: -1.14 Total: -32.26 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.12 -7.86 -36.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307711318.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.156 kcal (2) G-P(sol) polarization free energy of solvation -29.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds