Wall clock time and date at job start Mon Mar 30 2020 01:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47110 * 2 1 4 4 C 1.53002 * 109.47249 * 184.67016 * 3 2 1 5 5 H 1.09000 * 109.46876 * 54.10631 * 4 3 2 6 6 C 1.50699 * 109.47331 * 174.10978 * 4 3 2 7 7 O 1.20820 * 120.00557 * 119.99921 * 6 4 3 8 8 O 1.34227 * 119.99881 * 299.99941 * 6 4 3 9 9 C 1.45206 * 117.00277 * 179.97438 * 8 6 4 10 10 C 1.53003 * 109.47097 * 179.97438 * 9 8 6 11 11 N 1.46897 * 109.46924 * 294.10705 * 4 3 2 12 12 C 1.47489 * 111.00091 * 178.47488 * 11 4 3 13 13 C 1.53509 * 87.93218 * 221.29842 * 12 11 4 14 14 O 1.42904 * 114.16788 * 272.37480 * 13 12 11 15 15 C 1.50699 * 114.16809 * 139.67395 * 13 12 11 16 16 H 1.07997 * 120.00467 * 359.97438 * 15 13 12 17 17 C 1.37881 * 119.99897 * 180.02562 * 15 13 12 18 18 N 1.31515 * 119.99766 * 359.97438 * 17 15 13 19 19 Si 1.86797 * 120.00231 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.47008 * 59.99593 * 19 17 15 21 21 H 1.48491 * 109.47358 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47228 * 300.00094 * 19 17 15 23 23 C 1.47482 * 111.00030 * 82.50919 * 11 4 3 24 24 H 1.08997 * 109.46889 * 59.99894 * 1 2 3 25 25 H 1.08994 * 109.46957 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.46862 * 299.99981 * 1 2 3 27 27 H 1.08998 * 109.47202 * 240.00482 * 2 1 3 28 28 H 1.09000 * 109.47379 * 120.00226 * 2 1 3 29 29 H 1.09001 * 109.47039 * 64.67267 * 3 2 1 30 30 H 1.08996 * 109.47374 * 304.66908 * 3 2 1 31 31 H 1.08991 * 109.47067 * 300.00003 * 9 8 6 32 32 H 1.08997 * 109.46499 * 60.00055 * 9 8 6 33 33 H 1.08992 * 109.47084 * 300.00491 * 10 9 8 34 34 H 1.09007 * 109.46676 * 60.00539 * 10 9 8 35 35 H 1.08994 * 109.46719 * 179.97438 * 10 9 8 36 36 H 1.09003 * 113.47357 * 336.06414 * 12 11 4 37 37 H 1.09003 * 113.47351 * 106.52744 * 12 11 4 38 38 H 0.96706 * 113.99369 * 180.02562 * 14 13 12 39 39 H 0.97003 * 119.99644 * 180.02562 * 18 17 15 40 40 H 1.09003 * 113.47261 * 253.46789 * 23 11 4 41 41 H 1.08994 * 113.47920 * 23.93113 * 23 11 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5655 1.4441 -0.1174 5 1 3.8632 0.8648 -0.9915 6 6 4.0566 2.8614 -0.2630 7 8 4.8158 3.3247 0.5548 8 8 3.6507 3.6091 -1.3012 9 6 4.1636 4.9654 -1.3774 10 6 3.5950 5.6567 -2.6182 11 7 4.1501 0.8449 1.0896 12 6 5.6213 0.7963 0.9962 13 6 5.5586 -0.6071 1.6151 14 8 5.5737 -0.6177 3.0440 15 6 6.5148 -1.5961 0.9996 16 1 7.1652 -1.2889 0.1941 17 6 6.5584 -2.8935 1.4642 18 7 5.7660 -3.2678 2.4448 19 14 7.7430 -4.1196 0.7008 20 1 9.1358 -3.6318 0.8673 21 1 7.5960 -5.4350 1.3740 22 1 7.4397 -4.2665 -0.7454 23 6 4.1518 -0.6273 1.0011 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 1.8933 -0.5137 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.7466 1.9316 0.9289 30 1 1.6100 1.9799 -0.8452 31 1 3.8664 5.5168 -0.4854 32 1 5.2513 4.9392 -1.4428 33 1 3.8925 5.1051 -3.5099 34 1 2.5072 5.6828 -2.5531 35 1 3.9797 6.6750 -2.6750 36 1 5.9917 0.8027 -0.0289 37 1 6.1210 1.5286 1.6303 38 1 5.5346 -1.5030 3.4312 39 1 5.7970 -4.1805 2.7719 40 1 3.4063 -1.1015 1.6394 41 1 4.1301 -1.0008 -0.0226 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001307711318.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:35 Heat of formation + Delta-G solvation = -127.003341 kcal Electronic energy + Delta-G solvation = -22096.561721 eV Core-core repulsion = 18783.894712 eV Total energy + Delta-G solvation = -3312.667009 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.10667 -40.66174 -37.72548 -36.99445 -35.31285 -34.09638 -32.82207 -31.62823 -28.67407 -27.18288 -26.04146 -25.25723 -23.54190 -22.29984 -21.50770 -20.49377 -19.26696 -18.80905 -17.70871 -17.46821 -17.15199 -17.05010 -15.97672 -15.68571 -15.39957 -15.25502 -14.81654 -14.40370 -14.13138 -13.99210 -13.77087 -13.58150 -13.37246 -13.10278 -12.92892 -12.91651 -12.79378 -12.61882 -12.52011 -12.30292 -12.25347 -12.04377 -11.84633 -11.56268 -11.42455 -11.28290 -11.04014 -10.63889 -10.06334 -9.74890 -8.25285 -6.43310 1.08853 1.43854 1.45673 1.51510 1.54125 2.37638 2.95034 3.09509 3.56232 3.71178 3.90550 3.97904 4.02554 4.08058 4.08238 4.24664 4.30998 4.32483 4.38975 4.50519 4.66436 4.79162 4.83657 4.88719 4.90677 4.91915 5.01160 5.11092 5.12805 5.25589 5.30805 5.34632 5.39647 5.40800 5.51508 5.73966 5.95270 6.15023 6.61321 6.71300 7.29628 7.57271 8.79985 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.019017 B = 0.005361 C = 0.004707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.990928 B = 5221.338344 C = 5947.601791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.131 4.131 3 C -0.089 4.089 4 C 0.051 3.949 5 H 0.092 0.908 6 C 0.469 3.531 7 O -0.523 6.523 8 O -0.355 6.355 9 C 0.050 3.950 10 C -0.142 4.142 11 N -0.457 5.457 12 C 0.023 3.977 13 C 0.217 3.783 14 O -0.584 6.584 15 C -0.560 4.560 16 H 0.063 0.937 17 C 0.032 3.968 18 N -0.916 5.916 19 Si 0.968 3.032 20 H -0.275 1.275 21 H -0.278 1.278 22 H -0.267 1.267 23 C 0.007 3.993 24 H 0.068 0.932 25 H 0.058 0.942 26 H 0.053 0.947 27 H 0.065 0.935 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.098 0.902 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.101 0.899 36 H 0.066 0.934 37 H 0.056 0.944 38 H 0.384 0.616 39 H 0.276 0.724 40 H 0.066 0.934 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.690 9.733 -10.784 16.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.169 4.169 3 C -0.127 4.127 4 C -0.059 4.059 5 H 0.109 0.891 6 C 0.311 3.689 7 O -0.411 6.411 8 O -0.272 6.272 9 C -0.023 4.023 10 C -0.199 4.199 11 N -0.181 5.181 12 C -0.106 4.106 13 C 0.176 3.824 14 O -0.396 6.396 15 C -0.598 4.598 16 H 0.081 0.919 17 C -0.169 4.169 18 N -0.557 5.557 19 Si 0.793 3.207 20 H -0.201 1.201 21 H -0.203 1.203 22 H -0.192 1.192 23 C -0.121 4.121 24 H 0.087 0.913 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.116 0.884 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.119 0.881 36 H 0.084 0.916 37 H 0.075 0.925 38 H 0.239 0.761 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.851 10.786 -9.995 17.163 hybrid contribution 1.251 -1.416 -0.501 1.955 sum -7.600 9.370 -10.495 15.991 Atomic orbital electron populations 1.21701 0.93886 1.02146 1.02281 1.21709 0.97424 0.95423 1.02308 1.21483 0.88836 0.99018 1.03374 1.22232 0.99386 0.88556 0.95704 0.89101 1.23766 0.77719 0.88975 0.78392 1.90663 1.34264 1.73436 1.42748 1.86489 1.67332 1.27482 1.45902 1.23330 0.99138 0.78400 1.01446 1.21810 1.02511 1.00694 0.94867 1.69020 1.08101 1.09657 1.31364 1.23824 0.89692 0.97995 0.99042 1.19785 0.91839 0.91257 0.79515 1.86045 1.96691 1.36185 1.20671 1.21750 1.22817 0.95696 1.19562 0.91853 1.25782 0.96496 0.99682 0.94892 1.69358 1.38907 1.19925 1.27502 0.85453 0.78879 0.77522 0.78845 1.20078 1.20341 1.19151 1.24515 1.00693 0.86656 1.00257 0.91292 0.92264 0.92829 0.91665 0.92717 0.91804 0.88403 0.91523 0.91879 0.91184 0.90871 0.88064 0.91576 0.92516 0.76067 0.91419 0.91527 0.91173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 9.91 71.98 0.71 -2.31 16 2 C -0.13 -3.54 4.94 30.59 0.15 -3.39 16 3 C -0.09 -2.48 4.86 30.60 0.15 -2.34 16 4 C 0.05 1.75 1.87 44.17 0.08 1.83 16 5 H 0.09 2.94 7.54 -2.39 -0.02 2.92 16 6 C 0.47 16.30 7.00 71.24 0.50 16.79 16 7 O -0.52 -21.82 14.57 21.98 0.32 -21.50 16 8 O -0.36 -9.94 10.01 -51.38 -0.51 -10.45 16 9 C 0.05 1.12 6.19 71.98 0.45 1.57 16 10 C -0.14 -1.98 10.29 71.98 0.74 -1.24 16 11 N -0.46 -19.69 5.91 -907.23 -5.36 -25.05 16 12 C 0.02 1.11 5.42 83.57 0.45 1.57 16 13 C 0.22 11.37 1.57 -11.20 -0.02 11.35 16 14 O -0.58 -33.31 13.54 -148.98 -2.02 -35.33 16 15 C -0.56 -30.18 8.69 25.60 0.22 -29.96 16 16 H 0.06 3.34 7.81 -2.91 -0.02 3.32 16 17 C 0.03 1.65 5.40 84.66 0.46 2.11 16 18 N -0.92 -48.90 11.02 21.45 0.24 -48.66 16 19 Si 0.97 41.16 29.54 68.60 2.03 43.19 16 20 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 21 H -0.28 -11.48 7.11 99.48 0.71 -10.77 16 22 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 23 C 0.01 0.34 4.95 83.57 0.41 0.75 16 24 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 27 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.05 1.79 5.36 -2.39 -0.01 1.78 16 29 H 0.06 1.90 8.14 -2.39 -0.02 1.89 16 30 H 0.10 2.21 7.97 -2.39 -0.02 2.19 16 31 H 0.07 1.51 8.13 -2.39 -0.02 1.49 16 32 H 0.06 1.47 8.13 -2.39 -0.02 1.45 16 33 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 35 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.07 2.97 7.85 -2.39 -0.02 2.95 16 37 H 0.06 2.92 7.75 -2.39 -0.02 2.91 16 38 H 0.38 22.05 6.34 -74.05 -0.47 21.58 16 39 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 40 H 0.07 3.13 6.83 -2.39 -0.02 3.11 16 41 H 0.07 3.00 7.46 -2.39 -0.02 2.99 16 Total: -1.00 -63.00 331.61 -0.46 -63.46 By element: Atomic # 1 Polarization: 37.06 SS G_CDS: 0.54 Total: 37.60 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: 4.31 Total: -3.25 kcal Atomic # 7 Polarization: -68.59 SS G_CDS: -5.12 Total: -73.72 kcal Atomic # 8 Polarization: -65.07 SS G_CDS: -2.21 Total: -67.28 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 2.03 Total: 43.19 kcal Total: -63.00 -0.46 -63.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307711318.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.545 kcal (2) G-P(sol) polarization free energy of solvation -63.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds