Wall clock time and date at job start Mon Mar 30 2020 02:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.47553 * 2 1 4 4 N 1.46507 * 109.47425 * 119.99965 * 2 1 3 5 5 C 1.46495 * 120.00111 * 119.20652 * 4 2 1 6 6 C 1.50702 * 109.47047 * 270.00263 * 5 4 2 7 7 H 1.07996 * 119.99914 * 359.97438 * 6 5 4 8 8 C 1.37882 * 119.99845 * 179.97438 * 6 5 4 9 9 N 1.31508 * 120.00191 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99806 * 179.97438 * 8 6 5 11 11 H 1.48509 * 109.46993 * 90.00410 * 10 8 6 12 12 H 1.48501 * 109.47432 * 210.00142 * 10 8 6 13 13 H 1.48500 * 109.47358 * 330.00604 * 10 8 6 14 14 C 1.34772 * 119.99729 * 299.21201 * 4 2 1 15 15 O 1.21283 * 120.00226 * 5.29821 * 14 4 2 16 16 C 1.50698 * 119.99870 * 185.02955 * 14 4 2 17 17 O 1.42901 * 109.47370 * 179.19829 * 16 14 4 18 18 C 1.42898 * 114.00353 * 179.97438 * 17 16 14 19 19 H 1.08999 * 110.43926 * 328.91400 * 18 17 16 20 20 C 1.54805 * 110.49123 * 206.22247 * 18 17 16 21 21 C 1.55001 * 102.09348 * 220.44654 * 20 18 17 22 22 O 1.44374 * 103.48755 * 37.02465 * 21 20 18 23 23 C 1.43748 * 106.97794 * 319.93805 * 22 21 20 24 24 H 1.09001 * 109.47336 * 306.60669 * 1 2 3 25 25 H 1.08998 * 109.47394 * 66.60494 * 1 2 3 26 26 H 1.08996 * 109.47170 * 186.60817 * 1 2 3 27 27 H 1.09001 * 109.47452 * 240.00235 * 2 1 3 28 28 H 1.08993 * 109.47352 * 173.87655 * 3 2 1 29 29 H 1.09003 * 109.46762 * 293.87847 * 3 2 1 30 30 H 1.09007 * 109.46816 * 53.87409 * 3 2 1 31 31 H 1.09002 * 109.47288 * 29.99796 * 5 4 2 32 32 H 1.08995 * 109.47152 * 150.00499 * 5 4 2 33 33 H 0.96996 * 120.00312 * 180.02562 * 9 8 6 34 34 H 1.08998 * 109.47449 * 299.19943 * 16 14 4 35 35 H 1.08995 * 109.47438 * 59.20032 * 16 14 4 36 36 H 1.09002 * 110.91067 * 338.64132 * 20 18 17 37 37 H 1.08996 * 110.90780 * 102.24958 * 20 18 17 38 38 H 1.08994 * 110.61654 * 278.52227 * 21 20 18 39 39 H 1.09003 * 110.61663 * 155.52408 * 21 20 18 40 40 H 1.09000 * 109.87764 * 267.09208 * 23 22 21 41 41 H 1.08999 * 110.00153 * 146.01089 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.8462 -1.8917 1.0619 6 6 1.9608 -3.1108 1.0272 7 1 0.8887 -3.0017 1.0985 8 6 2.5195 -4.3653 0.9043 9 7 3.8250 -4.4982 0.8180 10 14 1.4221 -5.8763 0.8620 11 1 1.0482 -6.1774 -0.5434 12 1 2.1513 -7.0342 1.4390 13 1 0.1942 -5.6188 1.6566 14 6 1.7059 -0.2209 2.4202 15 8 0.9430 0.7150 2.5341 16 6 2.2999 -0.8625 3.6476 17 8 1.8351 -0.1802 4.8140 18 6 2.3414 -0.7129 6.0395 19 1 2.5137 -1.7852 5.9461 20 6 1.3644 -0.4176 7.2035 21 6 2.3338 -0.0491 8.3555 22 8 3.3860 0.6813 7.6896 23 6 3.6412 0.0088 6.4450 24 1 -0.3634 0.6128 0.8250 25 1 -0.3634 0.4080 -0.9431 26 1 -0.3633 -1.0208 0.1183 27 1 1.8933 -0.5138 -0.8900 28 1 3.1244 1.4444 0.1096 29 1 1.7689 1.9237 -0.9397 30 1 1.5899 1.9870 0.8301 31 1 3.4221 -1.8347 0.1382 32 1 3.5265 -1.9609 1.9106 33 1 4.2180 -5.3807 0.7312 34 1 1.9968 -1.9085 3.6937 35 1 3.3870 -0.8011 3.5998 36 1 0.7123 0.4214 6.9606 37 1 0.7801 -1.3027 7.4549 38 1 2.7297 -0.9488 8.8265 39 1 1.8341 0.5820 9.0905 40 1 4.4437 -0.7175 6.5740 41 1 3.9171 0.7337 5.6792 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318934038.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:47 Heat of formation + Delta-G solvation = -130.251027 kcal Electronic energy + Delta-G solvation = -21880.222632 eV Core-core repulsion = 18567.414792 eV Total energy + Delta-G solvation = -3312.807840 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.75590 -39.16440 -36.80803 -35.23087 -33.25912 -31.78117 -31.22974 -28.83056 -27.35763 -26.66507 -26.59046 -23.00850 -22.75233 -21.51909 -21.18926 -18.25117 -17.19711 -16.77192 -16.48311 -16.02315 -15.76277 -15.08551 -15.02700 -14.68451 -14.44705 -13.85016 -13.64304 -13.05753 -12.85329 -12.56931 -12.38203 -12.21917 -12.07086 -11.84980 -11.66359 -11.52178 -11.46052 -11.30933 -10.99959 -10.93494 -10.71512 -10.65414 -10.41538 -10.10683 -9.87096 -9.76831 -9.30044 -8.79332 -8.59831 -7.73856 -6.25354 -4.33307 3.17608 3.25032 3.26447 3.34559 3.38972 3.88020 4.21767 4.33536 4.52555 4.83131 5.01085 5.06497 5.07749 5.20409 5.41745 5.48347 5.58758 5.62280 5.63983 5.69405 5.72298 5.82845 5.87064 5.95130 5.99331 6.08723 6.20941 6.35412 6.47413 6.72802 6.75012 6.75696 6.85264 7.08141 7.32062 7.58108 7.70981 7.98234 8.31050 8.74033 9.02033 9.35500 10.81035 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.013758 B = 0.006011 C = 0.004673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.746973 B = 4656.659909 C = 5990.810477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.151 3.849 3 C -0.165 4.165 4 N -0.592 5.592 5 C 0.235 3.765 6 C -0.539 4.539 7 H 0.062 0.938 8 C 0.065 3.935 9 N -0.891 5.891 10 Si 0.896 3.104 11 H -0.278 1.278 12 H -0.285 1.285 13 H -0.273 1.273 14 C 0.522 3.478 15 O -0.549 6.549 16 C 0.044 3.956 17 O -0.352 6.352 18 C 0.054 3.946 19 H 0.080 0.920 20 C -0.152 4.152 21 C 0.047 3.953 22 O -0.376 6.376 23 C 0.024 3.976 24 H 0.073 0.927 25 H 0.050 0.950 26 H 0.057 0.943 27 H 0.084 0.916 28 H 0.050 0.950 29 H 0.055 0.945 30 H 0.071 0.929 31 H 0.037 0.963 32 H 0.036 0.964 33 H 0.266 0.734 34 H 0.092 0.908 35 H 0.074 0.926 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.061 0.939 39 H 0.095 0.905 40 H 0.064 0.936 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.096 5.418 7.553 9.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.047 3.953 3 C -0.223 4.223 4 N -0.325 5.325 5 C 0.115 3.885 6 C -0.578 4.578 7 H 0.080 0.920 8 C -0.138 4.138 9 N -0.530 5.530 10 Si 0.723 3.277 11 H -0.204 1.204 12 H -0.210 1.210 13 H -0.198 1.198 14 C 0.309 3.691 15 O -0.429 6.429 16 C -0.035 4.035 17 O -0.270 6.270 18 C -0.005 4.005 19 H 0.098 0.902 20 C -0.189 4.189 21 C -0.029 4.029 22 O -0.295 6.295 23 C -0.054 4.054 24 H 0.092 0.908 25 H 0.069 0.931 26 H 0.076 0.924 27 H 0.102 0.898 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.075 0.925 34 H 0.110 0.890 35 H 0.092 0.908 36 H 0.110 0.890 37 H 0.105 0.895 38 H 0.079 0.921 39 H 0.113 0.887 40 H 0.082 0.918 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.343 6.101 7.642 9.871 hybrid contribution -0.272 -1.662 -0.293 1.709 sum -1.615 4.439 7.349 8.736 Atomic orbital electron populations 1.22174 0.95595 1.02627 1.01767 1.20832 0.94325 0.92211 0.87919 1.22195 1.00886 0.96984 1.02261 1.48251 1.51683 1.28694 1.03871 1.19488 0.90030 0.80481 0.98511 1.21529 0.93881 0.90736 1.51627 0.91953 1.24948 0.95061 0.99090 0.94692 1.69914 1.09738 1.24090 1.49219 0.86524 0.80554 0.82076 0.78531 1.20411 1.21035 1.19755 1.19887 0.81540 0.83296 0.84335 1.90566 1.35980 1.29702 1.86616 1.22410 0.98848 0.97417 0.84851 1.88038 1.70290 1.56483 1.12239 1.23529 0.93190 0.97869 0.85890 0.90212 1.23201 0.98528 1.03703 0.93500 1.23533 0.87711 0.96550 0.95150 1.88873 1.56149 1.51945 1.32506 1.23786 0.97008 0.97404 0.87162 0.90827 0.93109 0.92412 0.89776 0.93079 0.92567 0.90969 0.94453 0.94638 0.92456 0.89009 0.90797 0.88978 0.89528 0.92058 0.88717 0.91751 0.88829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.93 9.01 37.15 0.33 -2.60 16 2 C 0.15 2.79 3.28 -67.93 -0.22 2.57 16 3 C -0.17 -2.72 9.01 37.16 0.33 -2.39 16 4 N -0.59 -12.30 2.41 -167.47 -0.40 -12.70 16 5 C 0.23 5.39 4.97 -5.20 -0.03 5.36 16 6 C -0.54 -13.62 9.39 -34.44 -0.32 -13.94 16 7 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 8 C 0.07 1.68 5.46 -17.82 -0.10 1.58 16 9 N -0.89 -23.84 13.29 55.43 0.74 -23.10 16 10 Si 0.90 20.09 29.54 -169.99 -5.02 15.07 16 11 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 12 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 13 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 14 C 0.52 10.99 7.16 -10.99 -0.08 10.91 16 15 O -0.55 -12.53 12.88 -14.35 -0.18 -12.72 16 16 C 0.04 0.82 4.75 36.00 0.17 0.99 16 17 O -0.35 -6.36 9.49 -55.14 -0.52 -6.88 16 18 C 0.05 0.76 3.51 -25.21 -0.09 0.67 16 19 H 0.08 1.03 7.86 -51.93 -0.41 0.62 16 20 C -0.15 -1.81 6.90 -24.72 -0.17 -1.98 16 21 C 0.05 0.50 7.72 38.21 0.29 0.80 16 22 O -0.38 -5.28 11.52 -35.23 -0.41 -5.69 16 23 C 0.02 0.32 7.52 37.73 0.28 0.60 16 24 H 0.07 1.43 6.27 -51.93 -0.33 1.10 16 25 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.08 1.53 7.79 -51.93 -0.40 1.13 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 1.31 6.47 -51.92 -0.34 0.98 16 31 H 0.04 0.90 7.91 -51.93 -0.41 0.49 16 32 H 0.04 0.82 6.42 -51.93 -0.33 0.49 16 33 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 34 H 0.09 1.75 8.03 -51.93 -0.42 1.34 16 35 H 0.07 1.26 7.54 -51.93 -0.39 0.87 16 36 H 0.09 1.20 8.09 -51.93 -0.42 0.78 16 37 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.09 1.33 7.97 -51.93 -0.41 0.92 16 LS Contribution 334.72 15.07 5.04 5.04 Total: -1.00 -29.27 334.72 -7.13 -36.40 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -6.79 Total: 1.99 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: 0.41 Total: 2.59 kcal Atomic # 7 Polarization: -36.14 SS G_CDS: 0.33 Total: -35.80 kcal Atomic # 8 Polarization: -24.18 SS G_CDS: -1.11 Total: -25.29 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.27 -7.13 -36.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318934038.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.851 kcal (2) G-P(sol) polarization free energy of solvation -29.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds