Wall clock time and date at job start Mon Mar 30 2020 02:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.47553 * 2 1 4 4 N 1.46507 * 109.47425 * 119.99965 * 2 1 3 5 5 C 1.46495 * 120.00111 * 119.20652 * 4 2 1 6 6 C 1.50702 * 109.47047 * 270.00263 * 5 4 2 7 7 H 1.07996 * 119.99914 * 359.97438 * 6 5 4 8 8 C 1.37882 * 119.99845 * 179.97438 * 6 5 4 9 9 N 1.31508 * 120.00191 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99806 * 179.97438 * 8 6 5 11 11 H 1.48509 * 109.46993 * 90.00410 * 10 8 6 12 12 H 1.48501 * 109.47432 * 210.00142 * 10 8 6 13 13 H 1.48500 * 109.47358 * 330.00604 * 10 8 6 14 14 C 1.34772 * 119.99729 * 299.21201 * 4 2 1 15 15 O 1.21283 * 120.00226 * 5.29821 * 14 4 2 16 16 C 1.50698 * 119.99870 * 185.02955 * 14 4 2 17 17 O 1.42901 * 109.47370 * 179.19829 * 16 14 4 18 18 C 1.42898 * 114.00353 * 179.97438 * 17 16 14 19 19 H 1.08999 * 110.43926 * 328.91400 * 18 17 16 20 20 C 1.54805 * 110.49123 * 206.22247 * 18 17 16 21 21 C 1.55001 * 102.09348 * 220.44654 * 20 18 17 22 22 O 1.44374 * 103.48755 * 37.02465 * 21 20 18 23 23 C 1.43748 * 106.97794 * 319.93805 * 22 21 20 24 24 H 1.09001 * 109.47336 * 306.60669 * 1 2 3 25 25 H 1.08998 * 109.47394 * 66.60494 * 1 2 3 26 26 H 1.08996 * 109.47170 * 186.60817 * 1 2 3 27 27 H 1.09001 * 109.47452 * 240.00235 * 2 1 3 28 28 H 1.08993 * 109.47352 * 173.87655 * 3 2 1 29 29 H 1.09003 * 109.46762 * 293.87847 * 3 2 1 30 30 H 1.09007 * 109.46816 * 53.87409 * 3 2 1 31 31 H 1.09002 * 109.47288 * 29.99796 * 5 4 2 32 32 H 1.08995 * 109.47152 * 150.00499 * 5 4 2 33 33 H 0.96996 * 120.00312 * 180.02562 * 9 8 6 34 34 H 1.08998 * 109.47449 * 299.19943 * 16 14 4 35 35 H 1.08995 * 109.47438 * 59.20032 * 16 14 4 36 36 H 1.09002 * 110.91067 * 338.64132 * 20 18 17 37 37 H 1.08996 * 110.90780 * 102.24958 * 20 18 17 38 38 H 1.08994 * 110.61654 * 278.52227 * 21 20 18 39 39 H 1.09003 * 110.61663 * 155.52408 * 21 20 18 40 40 H 1.09000 * 109.87764 * 267.09208 * 23 22 21 41 41 H 1.08999 * 110.00153 * 146.01089 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.8462 -1.8917 1.0619 6 6 1.9608 -3.1108 1.0272 7 1 0.8887 -3.0017 1.0985 8 6 2.5195 -4.3653 0.9043 9 7 3.8250 -4.4982 0.8180 10 14 1.4221 -5.8763 0.8620 11 1 1.0482 -6.1774 -0.5434 12 1 2.1513 -7.0342 1.4390 13 1 0.1942 -5.6188 1.6566 14 6 1.7059 -0.2209 2.4202 15 8 0.9430 0.7150 2.5341 16 6 2.2999 -0.8625 3.6476 17 8 1.8351 -0.1802 4.8140 18 6 2.3414 -0.7129 6.0395 19 1 2.5137 -1.7852 5.9461 20 6 1.3644 -0.4176 7.2035 21 6 2.3338 -0.0491 8.3555 22 8 3.3860 0.6813 7.6896 23 6 3.6412 0.0088 6.4450 24 1 -0.3634 0.6128 0.8250 25 1 -0.3634 0.4080 -0.9431 26 1 -0.3633 -1.0208 0.1183 27 1 1.8933 -0.5138 -0.8900 28 1 3.1244 1.4444 0.1096 29 1 1.7689 1.9237 -0.9397 30 1 1.5899 1.9870 0.8301 31 1 3.4221 -1.8347 0.1382 32 1 3.5265 -1.9609 1.9106 33 1 4.2180 -5.3807 0.7312 34 1 1.9968 -1.9085 3.6937 35 1 3.3870 -0.8011 3.5998 36 1 0.7123 0.4214 6.9606 37 1 0.7801 -1.3027 7.4549 38 1 2.7297 -0.9488 8.8265 39 1 1.8341 0.5820 9.0905 40 1 4.4437 -0.7175 6.5740 41 1 3.9171 0.7337 5.6792 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318934038.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:46 Heat of formation + Delta-G solvation = -147.608688 kcal Electronic energy + Delta-G solvation = -21880.975317 eV Core-core repulsion = 18567.414792 eV Total energy + Delta-G solvation = -3313.560524 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.16434 -40.44891 -38.10703 -36.90634 -35.06624 -33.41803 -32.34814 -29.89244 -29.09009 -28.22296 -28.01528 -24.84707 -23.79117 -22.95480 -22.30795 -19.83250 -18.71323 -18.34791 -17.86199 -17.47367 -17.02579 -16.56544 -16.35480 -16.25397 -15.84209 -15.23220 -15.09910 -14.54056 -14.29322 -14.00252 -13.83771 -13.64569 -13.47102 -13.23970 -13.14552 -12.95622 -12.74965 -12.70966 -12.61914 -12.39985 -12.18721 -12.10851 -11.80990 -11.69651 -11.63103 -10.96861 -10.64936 -10.49287 -10.35301 -9.46168 -8.21598 -6.36117 1.40309 1.43305 1.51648 1.70657 1.92335 2.39456 2.84095 2.97391 3.08689 3.49228 3.70033 3.85706 4.00988 4.10634 4.17404 4.22582 4.26669 4.37206 4.37807 4.40642 4.55855 4.70454 4.71466 4.78779 4.79716 4.90468 4.95327 5.00993 5.02258 5.03192 5.15617 5.30269 5.42021 5.66508 5.78065 5.90103 6.04340 6.11497 6.55734 6.80982 7.30368 7.40966 8.83600 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.013758 B = 0.006011 C = 0.004673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.746973 B = 4656.659909 C = 5990.810477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.138 3.862 3 C -0.153 4.153 4 N -0.593 5.593 5 C 0.248 3.752 6 C -0.546 4.546 7 H 0.051 0.949 8 C 0.026 3.974 9 N -0.917 5.917 10 Si 0.952 3.048 11 H -0.276 1.276 12 H -0.279 1.279 13 H -0.273 1.273 14 C 0.515 3.485 15 O -0.570 6.570 16 C 0.053 3.947 17 O -0.374 6.374 18 C 0.042 3.958 19 H 0.093 0.907 20 C -0.150 4.150 21 C 0.047 3.953 22 O -0.398 6.398 23 C 0.025 3.975 24 H 0.055 0.945 25 H 0.082 0.918 26 H 0.038 0.962 27 H 0.088 0.912 28 H 0.051 0.949 29 H 0.086 0.914 30 H 0.052 0.948 31 H 0.025 0.975 32 H 0.033 0.967 33 H 0.269 0.731 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.107 0.893 38 H 0.084 0.916 39 H 0.113 0.887 40 H 0.083 0.917 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.330 4.898 7.971 9.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.035 3.965 3 C -0.211 4.211 4 N -0.325 5.325 5 C 0.127 3.873 6 C -0.585 4.585 7 H 0.069 0.931 8 C -0.175 4.175 9 N -0.556 5.556 10 Si 0.778 3.222 11 H -0.201 1.201 12 H -0.204 1.204 13 H -0.198 1.198 14 C 0.303 3.697 15 O -0.451 6.451 16 C -0.026 4.026 17 O -0.292 6.292 18 C -0.016 4.016 19 H 0.111 0.889 20 C -0.187 4.187 21 C -0.028 4.028 22 O -0.318 6.318 23 C -0.052 4.052 24 H 0.074 0.926 25 H 0.101 0.899 26 H 0.057 0.943 27 H 0.106 0.894 28 H 0.070 0.930 29 H 0.105 0.895 30 H 0.071 0.929 31 H 0.043 0.957 32 H 0.051 0.949 33 H 0.078 0.922 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.094 0.906 37 H 0.126 0.874 38 H 0.102 0.898 39 H 0.131 0.869 40 H 0.101 0.899 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.581 5.589 8.062 9.936 hybrid contribution -0.213 -1.465 -0.407 1.535 sum -1.795 4.124 7.655 8.879 Atomic orbital electron populations 1.22072 0.95096 1.01223 1.02781 1.21115 0.94805 0.93344 0.87210 1.22082 1.00616 0.95333 1.03107 1.48283 1.51339 1.28163 1.04764 1.19194 0.89753 0.80710 0.97622 1.21667 0.93515 0.91812 1.51508 0.93101 1.25585 0.96116 1.01448 0.94364 1.69989 1.10937 1.24807 1.49911 0.85637 0.78930 0.79146 0.78474 1.20120 1.20428 1.19776 1.20324 0.81278 0.83107 0.85016 1.90550 1.36903 1.30651 1.86965 1.22257 0.99293 0.96592 0.84500 1.88016 1.70949 1.57109 1.13165 1.23865 0.94248 0.98587 0.84876 0.88912 1.23245 0.98383 1.04028 0.93070 1.23762 0.86695 0.97655 0.94730 1.88844 1.57205 1.53036 1.32696 1.23754 0.97202 0.97301 0.86908 0.92558 0.89902 0.94289 0.89397 0.93024 0.89481 0.92868 0.95682 0.94928 0.92228 0.89690 0.89533 0.90614 0.87423 0.89789 0.86851 0.89864 0.90318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.42 9.01 71.98 0.65 -4.77 16 2 C 0.14 5.04 3.28 44.99 0.15 5.18 16 3 C -0.15 -4.88 9.01 71.98 0.65 -4.23 16 4 N -0.59 -24.73 2.41 -802.15 -1.93 -26.66 16 5 C 0.25 11.44 4.97 85.63 0.43 11.86 16 6 C -0.55 -27.59 9.39 25.60 0.24 -27.35 16 7 H 0.05 2.65 7.81 -2.91 -0.02 2.63 16 8 C 0.03 1.30 5.46 84.66 0.46 1.76 16 9 N -0.92 -48.67 13.29 21.45 0.28 -48.38 16 10 Si 0.95 40.65 29.54 68.60 2.03 42.68 16 11 H -0.28 -11.59 7.11 99.48 0.71 -10.89 16 12 H -0.28 -11.59 7.11 99.48 0.71 -10.89 16 13 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 14 C 0.51 21.87 7.16 87.66 0.63 22.50 16 15 O -0.57 -26.35 12.88 15.99 0.21 -26.14 16 16 C 0.05 1.97 4.75 71.24 0.34 2.31 16 17 O -0.37 -13.53 9.49 -129.95 -1.23 -14.77 16 18 C 0.04 1.15 3.51 31.58 0.11 1.27 16 19 H 0.09 2.27 7.86 -2.39 -0.02 2.25 16 20 C -0.15 -3.36 6.90 31.89 0.22 -3.14 16 21 C 0.05 0.91 7.72 72.67 0.56 1.47 16 22 O -0.40 -10.71 11.52 -148.98 -1.72 -12.42 16 23 C 0.03 0.67 7.52 72.35 0.54 1.21 16 24 H 0.06 2.18 6.27 -2.39 -0.01 2.16 16 25 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 26 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.09 3.13 7.79 -2.39 -0.02 3.11 16 28 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.09 2.20 8.14 -2.39 -0.02 2.19 16 30 H 0.05 1.91 6.47 -2.38 -0.02 1.89 16 31 H 0.03 1.22 7.91 -2.39 -0.02 1.20 16 32 H 0.03 1.52 6.42 -2.39 -0.02 1.51 16 33 H 0.27 13.52 8.31 -92.71 -0.77 12.75 16 34 H 0.09 3.27 8.03 -2.39 -0.02 3.25 16 35 H 0.09 2.96 7.54 -2.39 -0.02 2.94 16 36 H 0.08 1.95 8.09 -2.39 -0.02 1.93 16 37 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.11 1.73 8.14 -2.39 -0.02 1.72 16 40 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.08 2.26 7.97 -2.39 -0.02 2.24 16 Total: -1.00 -61.78 334.72 3.61 -58.18 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: 0.99 Total: 19.44 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: 4.97 Total: 8.08 kcal Atomic # 7 Polarization: -73.40 SS G_CDS: -1.65 Total: -75.04 kcal Atomic # 8 Polarization: -50.59 SS G_CDS: -2.74 Total: -53.33 kcal Atomic # 14 Polarization: 40.65 SS G_CDS: 2.03 Total: 42.68 kcal Total: -61.78 3.61 -58.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318934038.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.432 kcal (2) G-P(sol) polarization free energy of solvation -61.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds