Wall clock time and date at job start Mon Mar 30 2020 00:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48505 * 109.46678 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47258 * 299.99866 * 3 2 1 6 6 H 1.48493 * 109.47346 * 60.00472 * 3 2 1 7 7 C 1.37876 * 119.99563 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99652 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 7 12 12 C 1.50703 * 109.46912 * 180.02562 * 11 10 9 13 13 O 1.21278 * 119.99985 * 359.97438 * 12 11 10 14 14 N 1.34777 * 120.00161 * 180.02562 * 12 11 10 15 15 C 1.46926 * 120.62694 * 359.97438 * 14 12 11 16 16 C 1.53194 * 108.77757 * 233.58761 * 15 14 12 17 17 C 1.53041 * 109.31182 * 305.36758 * 16 15 14 18 18 H 1.08993 * 109.45972 * 301.34453 * 17 16 15 19 19 C 1.53001 * 109.46049 * 181.36699 * 17 16 15 20 20 O 1.42905 * 109.46658 * 65.00003 * 19 17 16 21 21 C 1.53041 * 109.53878 * 61.36234 * 17 16 15 22 22 H 1.08997 * 109.49827 * 178.68173 * 21 17 16 23 23 O 1.42907 * 109.49436 * 58.61576 * 21 17 16 24 24 C 1.46922 * 120.63244 * 179.72194 * 14 12 11 25 25 H 0.97000 * 119.99425 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 27 27 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 28 28 H 1.09001 * 109.46652 * 60.00253 * 10 9 7 29 29 H 1.08992 * 109.47514 * 300.00342 * 10 9 7 30 30 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 31 31 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 32 32 H 1.09004 * 109.58973 * 353.37467 * 15 14 12 33 33 H 1.09002 * 109.58386 * 113.80333 * 15 14 12 34 34 H 1.08997 * 109.49594 * 65.31573 * 16 15 14 35 35 H 1.08999 * 109.49706 * 185.41576 * 16 15 14 36 36 H 1.08995 * 109.47456 * 184.99713 * 19 17 16 37 37 H 1.08995 * 109.47146 * 305.00466 * 19 17 16 38 38 H 0.96697 * 113.99377 * 179.97438 * 20 19 17 39 39 H 0.96707 * 113.99741 * 179.97438 * 23 21 17 40 40 H 1.09002 * 109.58436 * 246.19706 * 24 14 12 41 41 H 1.09002 * 109.58650 * 6.61866 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0012 12 6 2.4594 -6.1326 -0.0018 13 8 3.6517 -5.9110 -0.0032 14 7 2.0101 -7.4033 -0.0019 15 6 0.5686 -7.6875 -0.0009 16 6 0.2523 -8.6280 1.1663 17 6 1.1382 -9.8721 1.0682 18 1 0.9613 -10.3696 0.1147 19 6 0.8012 -10.8294 2.2131 20 8 -0.5373 -11.3051 2.0577 21 6 2.6095 -9.4616 1.1636 22 1 3.2389 -10.3502 1.1172 23 8 2.8354 -8.7810 2.3997 24 6 2.9524 -8.5305 -0.0087 25 1 -0.4849 0.8401 0.0004 26 1 0.6240 -2.5566 -0.8903 27 1 0.6246 -2.5571 0.8897 28 1 2.8725 -3.6048 0.8878 29 1 2.8712 -3.6040 -0.8921 30 1 0.8543 -5.0449 0.8894 31 1 0.8525 -5.0447 -0.8905 32 1 0.0128 -6.7575 0.1184 33 1 0.2896 -8.1645 -0.9404 34 1 0.4468 -8.1163 2.1088 35 1 -0.7959 -8.9235 1.1217 36 1 1.4909 -11.6733 2.1961 37 1 0.8922 -10.3048 3.1641 38 1 -0.8194 -11.9187 2.7499 39 1 3.7492 -8.4916 2.5280 40 1 2.8641 -9.0749 -0.9489 41 1 3.9700 -8.1567 0.1053 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327633900.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:44 Heat of formation + Delta-G solvation = -156.504366 kcal Electronic energy + Delta-G solvation = -21314.776364 eV Core-core repulsion = 18000.830094 eV Total energy + Delta-G solvation = -3313.946270 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.38258 -38.47144 -36.79871 -35.52634 -34.19043 -32.83547 -32.04629 -30.50710 -28.28603 -26.98654 -24.10034 -23.44580 -22.82748 -20.75488 -20.05849 -19.00955 -17.64808 -17.18957 -16.83509 -16.19500 -15.74255 -15.50749 -14.96200 -14.82753 -14.59800 -14.35363 -14.33078 -13.34521 -13.30056 -12.83699 -12.82321 -12.46535 -12.21314 -12.04327 -11.72619 -11.32329 -11.23578 -11.03801 -10.80169 -10.79557 -10.52029 -10.48666 -10.35500 -10.20784 -9.63629 -9.58982 -9.21936 -8.96885 -8.55206 -8.29484 -5.94987 -3.96136 2.92412 3.05459 3.35530 3.42669 3.48539 3.80107 3.98173 4.39193 4.49785 4.51893 4.70748 4.82495 4.97000 5.05925 5.10929 5.15078 5.23789 5.41084 5.42343 5.52001 5.59099 5.63728 5.69743 5.73679 5.76995 5.89167 6.19520 6.29994 6.52781 6.76919 6.97555 7.19936 7.29742 7.39745 7.50804 7.74620 7.87593 8.06095 8.44763 8.50348 9.11187 9.67676 11.16591 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.035100 B = 0.003317 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.537799 B = 8438.754997 C = 8839.857636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.516 4.516 8 H 0.056 0.944 9 C 0.020 3.980 10 C -0.094 4.094 11 C -0.137 4.137 12 C 0.519 3.481 13 O -0.542 6.542 14 N -0.614 5.614 15 C 0.106 3.894 16 C -0.123 4.123 17 C -0.078 4.078 18 H 0.088 0.912 19 C 0.084 3.916 20 O -0.574 6.574 21 C 0.097 3.903 22 H 0.064 0.936 23 O -0.556 6.556 24 C 0.080 3.920 25 H 0.259 0.741 26 H 0.015 0.985 27 H 0.016 0.984 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.041 0.959 37 H 0.055 0.945 38 H 0.379 0.621 39 H 0.381 0.619 40 H 0.071 0.929 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.671 -25.202 2.947 25.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.555 4.555 8 H 0.074 0.926 9 C -0.017 4.017 10 C -0.132 4.132 11 C -0.177 4.177 12 C 0.309 3.691 13 O -0.419 6.419 14 N -0.349 5.349 15 C -0.017 4.017 16 C -0.161 4.161 17 C -0.097 4.097 18 H 0.106 0.894 19 C 0.006 3.994 20 O -0.380 6.380 21 C 0.037 3.963 22 H 0.081 0.919 23 O -0.362 6.362 24 C -0.043 4.043 25 H 0.068 0.932 26 H 0.034 0.966 27 H 0.034 0.966 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.106 0.894 31 H 0.105 0.895 32 H 0.112 0.888 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.060 0.940 37 H 0.074 0.926 38 H 0.226 0.774 39 H 0.228 0.772 40 H 0.090 0.910 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.564 -24.674 2.485 24.805 hybrid contribution 0.936 0.528 0.385 1.142 sum 1.500 -24.145 2.870 24.362 Atomic orbital electron populations 1.69978 1.06022 1.26384 1.51354 1.25025 0.94859 0.99243 0.95442 0.86539 0.80231 0.83789 0.77497 1.19698 1.21063 1.21051 1.21314 0.93213 0.91018 1.49916 0.92554 1.19136 0.93980 0.91474 0.97111 1.21445 0.98613 0.91570 1.01589 1.21860 0.98220 0.94070 1.03518 1.21242 0.90177 0.83420 0.74226 1.90642 1.17392 1.84215 1.49632 1.48072 1.06637 1.05427 1.74733 1.21790 0.80763 1.00754 0.98370 1.21844 0.99818 0.94846 0.99613 1.21132 0.93217 0.96113 0.99198 0.89382 1.22135 0.82921 0.95792 0.98522 1.86453 1.30588 1.66821 1.54129 1.22176 0.95905 0.93592 0.84587 0.91853 1.86500 1.34187 1.78115 1.37423 1.22296 0.95629 0.88301 0.98108 0.93150 0.96625 0.96596 0.92765 0.92788 0.89362 0.89479 0.88812 0.91560 0.90463 0.90038 0.94030 0.92637 0.77444 0.77180 0.91035 0.88569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.38 13.29 55.43 0.74 -26.64 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 22.25 29.54 -169.99 -5.02 17.23 16 4 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 7 C -0.52 -15.16 9.11 -34.44 -0.31 -15.48 16 8 H 0.06 1.64 7.74 -52.48 -0.41 1.23 16 9 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 10 C -0.09 -2.09 4.44 -26.73 -0.12 -2.21 16 11 C -0.14 -2.39 4.05 -27.88 -0.11 -2.50 16 12 C 0.52 8.76 7.70 -10.98 -0.08 8.68 16 13 O -0.54 -10.96 15.39 5.56 0.09 -10.88 16 14 N -0.61 -7.92 2.91 -172.52 -0.50 -8.43 16 15 C 0.11 1.13 6.34 -3.71 -0.02 1.10 16 16 C -0.12 -1.24 5.13 -26.61 -0.14 -1.37 16 17 C -0.08 -0.69 2.22 -90.58 -0.20 -0.89 16 18 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 19 C 0.08 0.68 6.23 37.16 0.23 0.91 16 20 O -0.57 -4.70 13.17 -35.23 -0.46 -5.17 16 21 C 0.10 0.85 3.23 -26.41 -0.09 0.76 16 22 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 23 O -0.56 -5.67 12.00 -35.23 -0.42 -6.10 16 24 C 0.08 0.84 6.11 -3.51 -0.02 0.82 16 25 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 26 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 29 H 0.05 1.24 8.10 -51.93 -0.42 0.82 16 30 H 0.09 1.44 7.69 -51.93 -0.40 1.04 16 31 H 0.09 1.39 7.94 -51.93 -0.41 0.97 16 32 H 0.09 1.01 5.93 -51.93 -0.31 0.70 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 0.92 7.61 -51.93 -0.40 0.52 16 35 H 0.08 0.79 7.79 -51.93 -0.40 0.39 16 36 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.06 0.49 7.87 -51.93 -0.41 0.09 16 38 H 0.38 1.46 9.12 45.56 0.42 1.88 16 39 H 0.38 2.99 9.09 45.56 0.41 3.40 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.10 1.13 7.00 -51.93 -0.36 0.77 16 LS Contribution 331.90 15.07 5.00 5.00 Total: -1.00 -35.53 331.90 -6.89 -42.43 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -5.20 Total: 0.82 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: -1.10 Total: -8.27 kcal Atomic # 7 Polarization: -35.30 SS G_CDS: 0.23 Total: -35.06 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: -0.80 Total: -22.14 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -35.53 -6.89 -42.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327633900.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.078 kcal (2) G-P(sol) polarization free energy of solvation -35.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds