Wall clock time and date at job start Mon Mar 30 2020 00:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48505 * 109.46678 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47258 * 299.99866 * 3 2 1 6 6 H 1.48493 * 109.47346 * 60.00472 * 3 2 1 7 7 C 1.37876 * 119.99563 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99652 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 7 12 12 C 1.50703 * 109.46912 * 180.02562 * 11 10 9 13 13 O 1.21278 * 119.99985 * 359.97438 * 12 11 10 14 14 N 1.34777 * 120.00161 * 180.02562 * 12 11 10 15 15 C 1.46926 * 120.62694 * 359.97438 * 14 12 11 16 16 C 1.53194 * 108.77757 * 233.58761 * 15 14 12 17 17 C 1.53041 * 109.31182 * 305.36758 * 16 15 14 18 18 H 1.08993 * 109.45972 * 301.34453 * 17 16 15 19 19 C 1.53001 * 109.46049 * 181.36699 * 17 16 15 20 20 O 1.42905 * 109.46658 * 65.00003 * 19 17 16 21 21 C 1.53041 * 109.53878 * 61.36234 * 17 16 15 22 22 H 1.08997 * 109.49827 * 178.68173 * 21 17 16 23 23 O 1.42907 * 109.49436 * 58.61576 * 21 17 16 24 24 C 1.46922 * 120.63244 * 179.72194 * 14 12 11 25 25 H 0.97000 * 119.99425 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 27 27 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 28 28 H 1.09001 * 109.46652 * 60.00253 * 10 9 7 29 29 H 1.08992 * 109.47514 * 300.00342 * 10 9 7 30 30 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 31 31 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 32 32 H 1.09004 * 109.58973 * 353.37467 * 15 14 12 33 33 H 1.09002 * 109.58386 * 113.80333 * 15 14 12 34 34 H 1.08997 * 109.49594 * 65.31573 * 16 15 14 35 35 H 1.08999 * 109.49706 * 185.41576 * 16 15 14 36 36 H 1.08995 * 109.47456 * 184.99713 * 19 17 16 37 37 H 1.08995 * 109.47146 * 305.00466 * 19 17 16 38 38 H 0.96697 * 113.99377 * 179.97438 * 20 19 17 39 39 H 0.96707 * 113.99741 * 179.97438 * 23 21 17 40 40 H 1.09002 * 109.58436 * 246.19706 * 24 14 12 41 41 H 1.09002 * 109.58650 * 6.61866 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0012 12 6 2.4594 -6.1326 -0.0018 13 8 3.6517 -5.9110 -0.0032 14 7 2.0101 -7.4033 -0.0019 15 6 0.5686 -7.6875 -0.0009 16 6 0.2523 -8.6280 1.1663 17 6 1.1382 -9.8721 1.0682 18 1 0.9613 -10.3696 0.1147 19 6 0.8012 -10.8294 2.2131 20 8 -0.5373 -11.3051 2.0577 21 6 2.6095 -9.4616 1.1636 22 1 3.2389 -10.3502 1.1172 23 8 2.8354 -8.7810 2.3997 24 6 2.9524 -8.5305 -0.0087 25 1 -0.4849 0.8401 0.0004 26 1 0.6240 -2.5566 -0.8903 27 1 0.6246 -2.5571 0.8897 28 1 2.8725 -3.6048 0.8878 29 1 2.8712 -3.6040 -0.8921 30 1 0.8543 -5.0449 0.8894 31 1 0.8525 -5.0447 -0.8905 32 1 0.0128 -6.7575 0.1184 33 1 0.2896 -8.1645 -0.9404 34 1 0.4468 -8.1163 2.1088 35 1 -0.7959 -8.9235 1.1217 36 1 1.4909 -11.6733 2.1961 37 1 0.8922 -10.3048 3.1641 38 1 -0.8194 -11.9187 2.7499 39 1 3.7492 -8.4916 2.5280 40 1 2.8641 -9.0749 -0.9489 41 1 3.9700 -8.1567 0.1053 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327633900.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:43 Heat of formation + Delta-G solvation = -184.769124 kcal Electronic energy + Delta-G solvation = -21316.002016 eV Core-core repulsion = 18000.830094 eV Total energy + Delta-G solvation = -3315.171922 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.41772 -39.49531 -37.45788 -36.46242 -36.15124 -34.07435 -33.65382 -31.46141 -29.83703 -28.15071 -25.81767 -24.29554 -23.89081 -22.26817 -21.19547 -20.12952 -18.57619 -18.29405 -18.09033 -17.73606 -16.92642 -16.57766 -16.45639 -15.88392 -15.63663 -15.46879 -15.26075 -14.65706 -14.57442 -14.16164 -13.84685 -13.69334 -13.59497 -13.33655 -13.09121 -12.79353 -12.63917 -12.50841 -12.38147 -12.00897 -11.72158 -11.58026 -11.55388 -11.45966 -11.26468 -11.13006 -10.80984 -10.63858 -10.55194 -9.57799 -8.20597 -6.30741 1.39372 1.39433 1.53538 1.62301 1.99573 2.41558 3.12229 3.21954 3.32762 3.53683 3.75614 3.89957 3.97065 4.16258 4.17858 4.22631 4.30805 4.39198 4.49486 4.54806 4.66072 4.71177 4.74063 4.84626 4.92899 4.94287 4.98136 5.07194 5.13221 5.17978 5.41554 5.52165 5.58040 5.73928 5.85556 6.25730 6.35660 6.77113 6.84563 6.92042 7.18195 7.37949 8.91248 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.035100 B = 0.003317 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.537799 B = 8438.754997 C = 8839.857636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.002 3.998 3 Si 0.963 3.037 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.547 4.547 8 H 0.051 0.949 9 C 0.026 3.974 10 C -0.080 4.080 11 C -0.129 4.129 12 C 0.518 3.482 13 O -0.584 6.584 14 N -0.604 5.604 15 C 0.100 3.900 16 C -0.116 4.116 17 C -0.080 4.080 18 H 0.101 0.899 19 C 0.088 3.912 20 O -0.590 6.590 21 C 0.103 3.897 22 H 0.093 0.907 23 O -0.575 6.575 24 C 0.075 3.925 25 H 0.265 0.735 26 H 0.001 0.999 27 H -0.001 1.001 28 H 0.039 0.961 29 H 0.041 0.959 30 H 0.100 0.900 31 H 0.105 0.895 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.054 0.946 35 H 0.086 0.914 36 H 0.059 0.941 37 H 0.042 0.958 38 H 0.396 0.604 39 H 0.388 0.612 40 H 0.095 0.905 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.676 -26.572 2.677 26.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.788 3.212 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.585 4.585 8 H 0.069 0.931 9 C -0.011 4.011 10 C -0.118 4.118 11 C -0.169 4.169 12 C 0.308 3.692 13 O -0.465 6.465 14 N -0.337 5.337 15 C -0.022 4.022 16 C -0.155 4.155 17 C -0.099 4.099 18 H 0.119 0.881 19 C 0.011 3.989 20 O -0.399 6.399 21 C 0.043 3.957 22 H 0.111 0.889 23 O -0.382 6.382 24 C -0.048 4.048 25 H 0.074 0.926 26 H 0.019 0.981 27 H 0.018 0.982 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.118 0.882 31 H 0.123 0.877 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.073 0.927 35 H 0.105 0.895 36 H 0.078 0.922 37 H 0.060 0.940 38 H 0.246 0.754 39 H 0.237 0.763 40 H 0.113 0.887 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.541 -26.101 2.228 26.202 hybrid contribution 0.866 0.881 0.481 1.325 sum 1.406 -25.221 2.710 25.405 Atomic orbital electron populations 1.70081 1.07519 1.27742 1.51612 1.25927 0.95849 1.03126 0.94658 0.85424 0.78871 0.78882 0.78035 1.19201 1.19996 1.20038 1.21708 0.93327 0.92760 1.50686 0.93064 1.19015 0.94176 0.92427 0.95444 1.21148 0.97578 0.92867 1.00195 1.21681 0.98090 0.92128 1.04982 1.20972 0.89209 0.84594 0.74442 1.90626 1.18736 1.85022 1.52096 1.48063 1.08177 1.04745 1.72674 1.22015 0.79158 1.01125 0.99873 1.21750 1.00497 0.95162 0.98048 1.21193 0.92807 0.95648 1.00235 0.88113 1.22051 0.83377 0.96096 0.97415 1.86401 1.30669 1.67514 1.55282 1.22249 0.96504 0.93839 0.83118 0.88888 1.86481 1.35120 1.78464 1.38172 1.22553 0.94289 0.87705 1.00237 0.92645 0.98065 0.98241 0.94246 0.94024 0.88219 0.87717 0.89157 0.89169 0.92725 0.89528 0.92241 0.93981 0.75400 0.76266 0.88702 0.90031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.11 13.29 21.45 0.28 -56.82 16 2 C 0.00 0.14 5.46 84.65 0.46 0.60 16 3 Si 0.96 45.74 29.54 68.60 2.03 47.77 16 4 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 5 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 6 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 7 C -0.55 -32.77 9.11 25.60 0.23 -32.53 16 8 H 0.05 3.04 7.74 -2.91 -0.02 3.02 16 9 C 0.03 1.44 4.97 29.85 0.15 1.59 16 10 C -0.08 -3.65 4.44 30.59 0.14 -3.51 16 11 C -0.13 -4.51 4.05 29.85 0.12 -4.39 16 12 C 0.52 17.39 7.70 87.66 0.67 18.07 16 13 O -0.58 -24.00 15.39 -3.02 -0.05 -24.05 16 14 N -0.60 -14.81 2.91 -818.13 -2.38 -17.19 16 15 C 0.10 1.94 6.34 86.36 0.55 2.49 16 16 C -0.12 -2.15 5.13 30.67 0.16 -1.99 16 17 C -0.08 -1.21 2.22 -10.77 -0.02 -1.23 16 18 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 19 C 0.09 1.21 6.23 71.98 0.45 1.66 16 20 O -0.59 -8.30 13.17 -148.98 -1.96 -10.27 16 21 C 0.10 1.54 3.23 30.81 0.10 1.64 16 22 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 23 O -0.57 -11.06 12.00 -148.98 -1.79 -12.85 16 24 C 0.07 1.43 6.11 86.50 0.53 1.96 16 25 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 26 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 27 H 0.00 -0.05 8.14 -2.39 -0.02 -0.06 16 28 H 0.04 1.88 8.10 -2.39 -0.02 1.86 16 29 H 0.04 1.97 8.10 -2.39 -0.02 1.95 16 30 H 0.10 3.24 7.69 -2.39 -0.02 3.22 16 31 H 0.10 3.27 7.94 -2.39 -0.02 3.25 16 32 H 0.09 1.81 5.93 -2.38 -0.01 1.80 16 33 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.05 1.26 7.61 -2.39 -0.02 1.25 16 35 H 0.09 1.52 7.79 -2.39 -0.02 1.50 16 36 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.04 0.69 7.87 -2.39 -0.02 0.67 16 38 H 0.40 2.21 9.12 -74.06 -0.68 1.53 16 39 H 0.39 5.84 9.09 -74.05 -0.67 5.17 16 40 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.08 1.85 7.00 -2.39 -0.02 1.83 16 Total: -1.00 -76.88 331.90 -0.65 -77.53 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -0.32 Total: 11.52 kcal Atomic # 6 Polarization: -19.19 SS G_CDS: 3.53 Total: -15.65 kcal Atomic # 7 Polarization: -71.91 SS G_CDS: -2.09 Total: -74.01 kcal Atomic # 8 Polarization: -43.36 SS G_CDS: -3.80 Total: -47.16 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -76.88 -0.65 -77.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327633900.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.238 kcal (2) G-P(sol) polarization free energy of solvation -76.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds