Wall clock time and date at job start Mon Mar 30 2020 00:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99956 * 2 1 4 4 H 1.48497 * 109.47279 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46900 * 299.99688 * 3 2 1 6 6 H 1.48501 * 109.47314 * 59.99257 * 3 2 1 7 7 C 1.37881 * 119.99942 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99505 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00214 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46821 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.46821 * 179.97438 * 10 9 7 12 12 O 1.21289 * 120.00115 * 359.72713 * 11 10 9 13 13 N 1.34770 * 120.00151 * 180.02562 * 11 10 9 14 14 C 1.46505 * 120.00184 * 174.60109 * 13 11 10 15 15 C 1.53001 * 109.53818 * 303.42457 * 14 13 11 16 16 C 1.52998 * 109.47390 * 305.28777 * 15 14 13 17 17 O 1.42901 * 109.47270 * 174.93642 * 16 15 14 18 18 C 1.53173 * 109.54164 * 183.15748 * 14 13 11 19 19 C 1.53085 * 109.16675 * 297.10992 * 18 14 13 20 20 O 1.42908 * 109.41869 * 302.39696 * 19 18 14 21 21 C 1.42902 * 114.09575 * 61.14888 * 20 19 18 22 22 C 1.53091 * 109.41995 * 298.84580 * 21 20 19 23 23 H 0.96991 * 120.00335 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.46606 * 59.99655 * 9 7 2 25 25 H 1.08993 * 109.46719 * 299.99985 * 9 7 2 26 26 H 1.08994 * 109.47096 * 59.99983 * 10 9 7 27 27 H 1.09000 * 109.47231 * 299.99946 * 10 9 7 28 28 H 0.96994 * 119.99989 * 354.59185 * 13 11 10 29 29 H 1.08994 * 109.47319 * 65.29517 * 15 14 13 30 30 H 1.09006 * 109.46637 * 185.28945 * 15 14 13 31 31 H 1.08999 * 109.47099 * 294.94403 * 16 15 14 32 32 H 1.09001 * 109.46311 * 54.93831 * 16 15 14 33 33 H 0.96692 * 113.99920 * 180.02562 * 17 16 15 34 34 H 1.09002 * 109.52313 * 57.01963 * 18 14 13 35 35 H 1.09010 * 109.52213 * 177.20347 * 18 14 13 36 36 H 1.09000 * 109.48495 * 182.40914 * 19 18 14 37 37 H 1.09004 * 109.48994 * 62.37983 * 19 18 14 38 38 H 1.09009 * 109.47693 * 178.86333 * 21 20 19 39 39 H 1.08996 * 109.48558 * 58.84169 * 21 20 19 40 40 H 1.09001 * 109.52277 * 297.70878 * 22 21 20 41 41 H 1.09001 * 109.57379 * 177.54554 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4919 -4.9672 0.0012 12 8 0.2791 -4.9673 0.0066 13 7 2.1658 -6.1343 0.0018 14 6 1.4382 -7.4003 0.1218 15 6 0.5957 -7.3872 1.3989 16 6 1.4932 -7.0778 2.5988 17 8 0.6900 -6.9491 3.7737 18 6 2.4357 -8.5614 0.1755 19 6 3.2191 -8.6122 -1.1387 20 8 2.3074 -8.7519 -2.2302 21 6 1.3811 -7.6714 -2.3586 22 6 0.5237 -7.5829 -1.0935 23 1 -0.4850 0.8399 -0.0004 24 1 0.6248 -2.5571 -0.8897 25 1 0.6241 -2.5567 0.8902 26 1 2.8720 -3.6043 0.8905 27 1 2.8721 -3.6043 -0.8895 28 1 3.1325 -6.1362 -0.0773 29 1 -0.1771 -6.6230 1.3166 30 1 0.1289 -8.3626 1.5362 31 1 2.2094 -7.8880 2.7352 32 1 2.0289 -6.1454 2.4209 33 1 1.1940 -6.7519 4.5750 34 1 3.1259 -8.4106 1.0055 35 1 1.8966 -9.4986 0.3147 36 1 3.9006 -9.4628 -1.1230 37 1 3.7900 -7.6913 -1.2576 38 1 0.7384 -7.8443 -3.2220 39 1 1.9276 -6.7381 -2.4935 40 1 -0.0539 -8.5003 -0.9800 41 1 -0.1541 -6.7327 -1.1704 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328436644.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:17 Heat of formation + Delta-G solvation = -150.438650 kcal Electronic energy + Delta-G solvation = -22108.678664 eV Core-core repulsion = 18794.995423 eV Total energy + Delta-G solvation = -3313.683241 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.75058 -38.38672 -36.99657 -35.36466 -33.47392 -32.09186 -31.32890 -30.59355 -29.82851 -25.86135 -24.77790 -23.84725 -22.11691 -21.60736 -19.96024 -19.11399 -17.53109 -17.09430 -16.37878 -16.14039 -15.75416 -15.57476 -15.10685 -14.80074 -14.58787 -14.44790 -14.05406 -13.46256 -13.18652 -12.92121 -12.47085 -12.39711 -12.17269 -12.11114 -11.64509 -11.53513 -11.35293 -11.17571 -10.96228 -10.62905 -10.59683 -10.48970 -10.00612 -9.92728 -9.69423 -9.62915 -9.13593 -8.92671 -8.77531 -8.33856 -5.97715 -4.02211 3.19444 3.31137 3.37423 3.40284 3.44003 3.74800 4.12503 4.42492 4.46389 4.65563 4.76595 4.99195 5.04301 5.12138 5.22447 5.29132 5.34635 5.37420 5.42356 5.53009 5.63632 5.69660 5.78114 5.86592 5.95045 5.98859 6.15120 6.18132 6.23625 6.37756 6.75184 6.86356 7.06849 7.62575 7.72761 7.84324 7.84994 8.05349 8.36942 8.75530 9.06607 9.61578 11.13207 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.021216 B = 0.004657 C = 0.004186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.431051 B = 6011.606165 C = 6686.911559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.527 4.527 8 H 0.055 0.945 9 C 0.038 3.962 10 C -0.131 4.131 11 C 0.512 3.488 12 O -0.524 6.524 13 N -0.740 5.740 14 C 0.184 3.816 15 C -0.131 4.131 16 C 0.081 3.919 17 O -0.573 6.573 18 C -0.160 4.160 19 C 0.061 3.939 20 O -0.384 6.384 21 C 0.064 3.936 22 C -0.165 4.165 23 H 0.260 0.740 24 H 0.023 0.977 25 H 0.023 0.977 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.395 0.605 29 H 0.098 0.902 30 H 0.071 0.929 31 H 0.038 0.962 32 H 0.049 0.951 33 H 0.377 0.623 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.051 0.949 38 H 0.093 0.907 39 H 0.054 0.946 40 H 0.074 0.926 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.627 -18.823 1.110 20.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.565 4.565 8 H 0.074 0.926 9 C 0.001 3.999 10 C -0.171 4.171 11 C 0.301 3.699 12 O -0.398 6.398 13 N -0.396 5.396 14 C 0.098 3.902 15 C -0.169 4.169 16 C 0.003 3.997 17 O -0.378 6.378 18 C -0.198 4.198 19 C -0.016 4.016 20 O -0.303 6.303 21 C -0.013 4.013 22 C -0.204 4.204 23 H 0.070 0.930 24 H 0.041 0.959 25 H 0.042 0.958 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.229 0.771 29 H 0.117 0.883 30 H 0.089 0.911 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.223 0.777 34 H 0.098 0.902 35 H 0.105 0.895 36 H 0.112 0.888 37 H 0.069 0.931 38 H 0.111 0.889 39 H 0.072 0.928 40 H 0.093 0.907 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 6.091 -18.973 0.570 19.935 hybrid contribution 1.424 1.280 0.613 2.010 sum 7.515 -17.693 1.183 19.259 Atomic orbital electron populations 1.70003 1.06047 1.26490 1.50217 1.25020 0.94807 0.99213 0.95292 0.86550 0.79985 0.83896 0.77610 1.19785 1.21000 1.21013 1.21250 0.92909 0.91039 1.51349 0.92648 1.18883 0.93118 0.89329 0.98602 1.21880 1.00747 0.92163 1.02294 1.21502 0.88734 0.85445 0.74212 1.90621 1.14325 1.87412 1.47490 1.46429 1.10118 1.05386 1.77623 1.20139 0.91837 0.83616 0.94605 1.21879 0.99642 1.03798 0.91559 1.22140 0.92876 0.99320 0.85360 1.86490 1.38241 1.94578 1.18497 1.22546 0.99247 0.98961 0.99018 1.22543 0.91470 1.01840 0.85750 1.87913 1.47305 1.45606 1.49486 1.22564 0.91172 0.89867 0.97661 1.22596 0.99205 1.04268 0.94290 0.92990 0.95856 0.95815 0.90426 0.90444 0.77105 0.88343 0.91061 0.94348 0.93315 0.77711 0.90231 0.89544 0.88829 0.93120 0.88886 0.92787 0.90713 0.88148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.32 13.29 55.43 0.74 -26.58 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.53 -14.81 9.11 -34.44 -0.31 -15.13 16 8 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 9 C 0.04 1.01 4.26 -27.88 -0.12 0.89 16 10 C -0.13 -2.56 5.64 -27.88 -0.16 -2.71 16 11 C 0.51 9.15 6.83 -10.99 -0.08 9.08 16 12 O -0.52 -11.41 12.28 5.55 0.07 -11.34 16 13 N -0.74 -9.48 3.31 -47.43 -0.16 -9.64 16 14 C 0.18 2.19 0.35 -131.63 -0.05 2.14 16 15 C -0.13 -1.77 4.28 -26.73 -0.11 -1.89 16 16 C 0.08 1.00 6.55 37.16 0.24 1.25 16 17 O -0.57 -7.76 13.66 -35.23 -0.48 -8.24 16 18 C -0.16 -1.41 4.67 -26.60 -0.12 -1.53 16 19 C 0.06 0.54 6.67 37.20 0.25 0.79 16 20 O -0.38 -4.49 10.77 -35.23 -0.38 -4.87 16 21 C 0.06 0.76 6.68 37.20 0.25 1.01 16 22 C -0.17 -2.12 4.81 -26.59 -0.13 -2.24 16 23 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 24 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 25 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 26 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 27 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 28 H 0.39 4.01 7.43 -40.82 -0.30 3.70 16 29 H 0.10 1.74 6.28 -51.93 -0.33 1.41 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.04 0.37 6.92 -51.93 -0.36 0.02 16 32 H 0.05 0.65 6.97 -51.93 -0.36 0.29 16 33 H 0.38 3.29 9.12 45.56 0.42 3.71 16 34 H 0.08 0.58 6.88 -51.93 -0.36 0.22 16 35 H 0.09 0.74 8.14 -51.92 -0.42 0.32 16 36 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.05 0.42 7.03 -51.93 -0.36 0.06 16 38 H 0.09 1.02 8.14 -51.92 -0.42 0.60 16 39 H 0.05 0.68 7.75 -51.93 -0.40 0.28 16 40 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.10 1.59 6.21 -51.93 -0.32 1.27 16 LS Contribution 323.28 15.07 4.87 4.87 Total: -1.00 -34.57 323.28 -6.52 -41.09 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -5.72 Total: 4.91 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: -0.43 Total: -6.75 kcal Atomic # 7 Polarization: -36.80 SS G_CDS: 0.58 Total: -36.22 kcal Atomic # 8 Polarization: -23.65 SS G_CDS: -0.79 Total: -24.45 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -34.57 -6.52 -41.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328436644.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.351 kcal (2) G-P(sol) polarization free energy of solvation -34.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds