Wall clock time and date at job start Mon Mar 30 2020 00:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99956 * 2 1 4 4 H 1.48497 * 109.47279 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46900 * 299.99688 * 3 2 1 6 6 H 1.48501 * 109.47314 * 59.99257 * 3 2 1 7 7 C 1.37881 * 119.99942 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99505 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00214 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46821 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.46821 * 179.97438 * 10 9 7 12 12 O 1.21289 * 120.00115 * 359.72713 * 11 10 9 13 13 N 1.34770 * 120.00151 * 180.02562 * 11 10 9 14 14 C 1.46505 * 120.00184 * 174.60109 * 13 11 10 15 15 C 1.53001 * 109.53818 * 303.42457 * 14 13 11 16 16 C 1.52998 * 109.47390 * 305.28777 * 15 14 13 17 17 O 1.42901 * 109.47270 * 174.93642 * 16 15 14 18 18 C 1.53173 * 109.54164 * 183.15748 * 14 13 11 19 19 C 1.53085 * 109.16675 * 297.10992 * 18 14 13 20 20 O 1.42908 * 109.41869 * 302.39696 * 19 18 14 21 21 C 1.42902 * 114.09575 * 61.14888 * 20 19 18 22 22 C 1.53091 * 109.41995 * 298.84580 * 21 20 19 23 23 H 0.96991 * 120.00335 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.46606 * 59.99655 * 9 7 2 25 25 H 1.08993 * 109.46719 * 299.99985 * 9 7 2 26 26 H 1.08994 * 109.47096 * 59.99983 * 10 9 7 27 27 H 1.09000 * 109.47231 * 299.99946 * 10 9 7 28 28 H 0.96994 * 119.99989 * 354.59185 * 13 11 10 29 29 H 1.08994 * 109.47319 * 65.29517 * 15 14 13 30 30 H 1.09006 * 109.46637 * 185.28945 * 15 14 13 31 31 H 1.08999 * 109.47099 * 294.94403 * 16 15 14 32 32 H 1.09001 * 109.46311 * 54.93831 * 16 15 14 33 33 H 0.96692 * 113.99920 * 180.02562 * 17 16 15 34 34 H 1.09002 * 109.52313 * 57.01963 * 18 14 13 35 35 H 1.09010 * 109.52213 * 177.20347 * 18 14 13 36 36 H 1.09000 * 109.48495 * 182.40914 * 19 18 14 37 37 H 1.09004 * 109.48994 * 62.37983 * 19 18 14 38 38 H 1.09009 * 109.47693 * 178.86333 * 21 20 19 39 39 H 1.08996 * 109.48558 * 58.84169 * 21 20 19 40 40 H 1.09001 * 109.52277 * 297.70878 * 22 21 20 41 41 H 1.09001 * 109.57379 * 177.54554 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4919 -4.9672 0.0012 12 8 0.2791 -4.9673 0.0066 13 7 2.1658 -6.1343 0.0018 14 6 1.4382 -7.4003 0.1218 15 6 0.5957 -7.3872 1.3989 16 6 1.4932 -7.0778 2.5988 17 8 0.6900 -6.9491 3.7737 18 6 2.4357 -8.5614 0.1755 19 6 3.2191 -8.6122 -1.1387 20 8 2.3074 -8.7519 -2.2302 21 6 1.3811 -7.6714 -2.3586 22 6 0.5237 -7.5829 -1.0935 23 1 -0.4850 0.8399 -0.0004 24 1 0.6248 -2.5571 -0.8897 25 1 0.6241 -2.5567 0.8902 26 1 2.8720 -3.6043 0.8905 27 1 2.8721 -3.6043 -0.8895 28 1 3.1325 -6.1362 -0.0773 29 1 -0.1771 -6.6230 1.3166 30 1 0.1289 -8.3626 1.5362 31 1 2.2094 -7.8880 2.7352 32 1 2.0289 -6.1454 2.4209 33 1 1.1940 -6.7519 4.5750 34 1 3.1259 -8.4106 1.0055 35 1 1.8966 -9.4986 0.3147 36 1 3.9006 -9.4628 -1.1230 37 1 3.7900 -7.6913 -1.2576 38 1 0.7384 -7.8443 -3.2220 39 1 1.9276 -6.7381 -2.4935 40 1 -0.0539 -8.5003 -0.9800 41 1 -0.1541 -6.7327 -1.1704 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328436644.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:16 Heat of formation + Delta-G solvation = -178.174268 kcal Electronic energy + Delta-G solvation = -22109.881370 eV Core-core repulsion = 18794.995423 eV Total energy + Delta-G solvation = -3314.885947 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.86085 -39.59650 -38.02943 -36.47005 -35.52947 -33.57414 -32.39645 -32.13841 -30.78612 -27.76696 -25.82675 -24.73887 -23.85678 -22.60728 -21.41684 -20.29132 -18.85637 -18.50796 -17.77980 -17.11362 -16.99985 -16.68125 -16.51058 -16.24247 -15.85847 -15.60476 -15.21267 -14.93273 -14.34806 -14.22348 -14.04740 -13.60699 -13.38404 -13.22312 -13.18305 -12.89787 -12.73009 -12.45661 -12.43656 -12.23567 -11.91280 -11.65406 -11.58064 -11.41216 -11.27037 -10.90733 -10.60402 -10.57739 -10.39891 -9.96233 -8.18728 -6.32758 1.41424 1.42649 1.55827 1.76140 2.21377 2.43724 2.93820 3.14600 3.20723 3.56075 3.75053 3.97732 4.05010 4.07237 4.17996 4.22530 4.36286 4.42431 4.46298 4.50495 4.54993 4.66891 4.77107 4.79856 4.85383 4.95944 5.03759 5.08288 5.11848 5.13843 5.24226 5.48870 5.62179 5.63710 5.85532 6.17424 6.23996 6.66158 6.86275 6.86668 7.37441 7.41813 8.94087 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.021216 B = 0.004657 C = 0.004186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.431051 B = 6011.606165 C = 6686.911559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.007 4.007 3 Si 0.973 3.027 4 H -0.252 1.252 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.541 4.541 8 H 0.075 0.925 9 C 0.045 3.955 10 C -0.121 4.121 11 C 0.515 3.485 12 O -0.571 6.571 13 N -0.714 5.714 14 C 0.185 3.815 15 C -0.131 4.131 16 C 0.081 3.919 17 O -0.599 6.599 18 C -0.149 4.149 19 C 0.053 3.947 20 O -0.394 6.394 21 C 0.070 3.930 22 C -0.165 4.165 23 H 0.262 0.738 24 H -0.019 1.019 25 H -0.021 1.021 26 H 0.101 0.899 27 H 0.101 0.899 28 H 0.413 0.587 29 H 0.048 0.952 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.036 0.964 33 H 0.396 0.604 34 H 0.106 0.894 35 H 0.096 0.904 36 H 0.121 0.879 37 H 0.059 0.941 38 H 0.097 0.903 39 H 0.044 0.956 40 H 0.084 0.916 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.155 -20.117 1.449 23.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.204 4.204 3 Si 0.796 3.204 4 H -0.175 1.175 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.579 4.579 8 H 0.093 0.907 9 C 0.007 3.993 10 C -0.161 4.161 11 C 0.304 3.696 12 O -0.450 6.450 13 N -0.369 5.369 14 C 0.099 3.901 15 C -0.169 4.169 16 C 0.004 3.996 17 O -0.408 6.408 18 C -0.187 4.187 19 C -0.023 4.023 20 O -0.313 6.313 21 C -0.007 4.007 22 C -0.203 4.203 23 H 0.071 0.929 24 H 0.000 1.000 25 H -0.002 1.002 26 H 0.119 0.881 27 H 0.119 0.881 28 H 0.251 0.749 29 H 0.067 0.933 30 H 0.101 0.899 31 H 0.096 0.904 32 H 0.055 0.945 33 H 0.245 0.755 34 H 0.124 0.876 35 H 0.115 0.885 36 H 0.139 0.861 37 H 0.077 0.923 38 H 0.115 0.885 39 H 0.063 0.937 40 H 0.102 0.898 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 9.694 -20.309 0.921 22.523 hybrid contribution 0.282 1.615 0.533 1.724 sum 9.976 -18.694 1.454 21.239 Atomic orbital electron populations 1.70184 1.08339 1.27705 1.51607 1.26126 0.95675 1.03921 0.94671 0.85292 0.79348 0.78186 0.77528 1.17543 1.20665 1.20699 1.21748 0.93946 0.91665 1.50573 0.90676 1.18647 0.93631 0.92473 0.94510 1.21641 0.99320 0.90604 1.04517 1.21161 0.87910 0.86427 0.74131 1.90635 1.16378 1.88087 1.49867 1.46077 1.10919 1.04382 1.75489 1.20254 0.92495 0.84045 0.93316 1.21849 0.99143 1.02667 0.93252 1.22186 0.92793 1.00106 0.84506 1.86446 1.39823 1.94734 1.19759 1.22530 0.98688 0.97294 1.00151 1.22837 0.91252 1.03590 0.84668 1.87911 1.47506 1.45142 1.50768 1.22437 0.91206 0.89791 0.97218 1.22540 0.99197 1.03024 0.95587 0.92909 1.00035 1.00222 0.88112 0.88066 0.74912 0.93342 0.89903 0.90380 0.94532 0.75487 0.87577 0.88512 0.86088 0.92318 0.88484 0.93739 0.89771 0.91996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.84 13.29 21.45 0.28 -59.55 16 2 C -0.01 -0.38 5.46 84.66 0.46 0.08 16 3 Si 0.97 44.28 29.54 68.60 2.03 46.30 16 4 H -0.25 -10.53 7.11 99.48 0.71 -9.82 16 5 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 6 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 7 C -0.54 -30.71 9.11 25.60 0.23 -30.47 16 8 H 0.08 3.88 7.74 -2.91 -0.02 3.85 16 9 C 0.05 2.49 4.26 29.85 0.13 2.62 16 10 C -0.12 -4.72 5.64 29.85 0.17 -4.55 16 11 C 0.52 18.80 6.83 87.66 0.60 19.40 16 12 O -0.57 -26.68 12.28 -3.06 -0.04 -26.71 16 13 N -0.71 -17.34 3.31 -422.37 -1.40 -18.73 16 14 C 0.18 4.14 0.35 3.72 0.00 4.15 16 15 C -0.13 -3.51 4.28 30.59 0.13 -3.38 16 16 C 0.08 1.88 6.55 71.98 0.47 2.35 16 17 O -0.60 -15.73 13.66 -148.98 -2.04 -17.77 16 18 C -0.15 -2.03 4.67 30.68 0.14 -1.89 16 19 C 0.05 0.72 6.67 72.01 0.48 1.20 16 20 O -0.39 -8.20 10.77 -148.98 -1.60 -9.80 16 21 C 0.07 1.62 6.68 72.01 0.48 2.11 16 22 C -0.16 -4.25 4.81 30.68 0.15 -4.11 16 23 H 0.26 15.64 8.31 -92.72 -0.77 14.87 16 24 H -0.02 -1.18 8.10 -2.39 -0.02 -1.20 16 25 H -0.02 -1.31 8.10 -2.39 -0.02 -1.33 16 26 H 0.10 3.46 8.14 -2.39 -0.02 3.44 16 27 H 0.10 3.46 8.14 -2.39 -0.02 3.44 16 28 H 0.41 7.08 7.43 -92.71 -0.69 6.39 16 29 H 0.05 1.82 6.28 -2.39 -0.02 1.80 16 30 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 31 H 0.08 1.19 6.92 -2.39 -0.02 1.18 16 32 H 0.04 0.92 6.97 -2.39 -0.02 0.90 16 33 H 0.40 6.40 9.12 -74.06 -0.68 5.73 16 34 H 0.11 0.95 6.88 -2.39 -0.02 0.94 16 35 H 0.10 1.23 8.14 -2.38 -0.02 1.21 16 36 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.06 0.73 7.03 -2.38 -0.02 0.71 16 38 H 0.10 2.11 8.14 -2.38 -0.02 2.09 16 39 H 0.04 1.10 7.75 -2.39 -0.02 1.08 16 40 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.06 2.11 6.21 -2.39 -0.01 2.10 16 Total: -1.00 -80.51 323.28 0.36 -80.15 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: -0.33 Total: 18.61 kcal Atomic # 6 Polarization: -15.94 SS G_CDS: 3.45 Total: -12.49 kcal Atomic # 7 Polarization: -77.17 SS G_CDS: -1.11 Total: -78.28 kcal Atomic # 8 Polarization: -50.61 SS G_CDS: -3.68 Total: -54.28 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.30 kcal Total: -80.51 0.36 -80.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328436644.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.024 kcal (2) G-P(sol) polarization free energy of solvation -80.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds