Wall clock time and date at job start Mon Mar 30 2020 00:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52994 * 109.47023 * 2 1 4 4 C 1.52998 * 109.47274 * 60.00243 * 3 2 1 5 5 C 1.53001 * 109.47295 * 300.00093 * 3 2 1 6 6 C 1.52998 * 109.47097 * 180.02562 * 3 2 1 7 7 H 1.09000 * 109.47288 * 65.22980 * 6 3 2 8 8 O 1.42903 * 109.47023 * 305.22969 * 6 3 2 9 9 C 1.50701 * 109.47106 * 185.23093 * 6 3 2 10 10 O 1.21276 * 120.00117 * 94.77260 * 9 6 3 11 11 N 1.34777 * 119.99990 * 274.76332 * 9 6 3 12 12 C 1.47066 * 136.05716 * 174.47952 * 11 9 6 13 13 C 1.53497 * 88.04869 * 207.06359 * 12 11 9 14 14 O 1.42899 * 114.20808 * 87.55105 * 13 12 11 15 15 C 1.50703 * 114.20650 * 220.37307 * 13 12 11 16 16 H 1.08004 * 119.99801 * 0.02562 * 15 13 12 17 17 C 1.37875 * 120.00141 * 180.02562 * 15 13 12 18 18 N 1.31518 * 119.99954 * 359.97438 * 17 15 13 19 19 Si 1.86800 * 120.00133 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47082 * 59.99869 * 19 17 15 21 21 H 1.48491 * 109.47211 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47093 * 300.00208 * 19 17 15 23 23 C 1.47066 * 136.05681 * 354.43829 * 11 9 6 24 24 H 1.08995 * 109.46911 * 59.99663 * 1 2 3 25 25 H 1.09001 * 109.47108 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46534 * 299.99709 * 1 2 3 27 27 H 1.09008 * 109.46566 * 240.00165 * 2 1 3 28 28 H 1.08994 * 109.47144 * 120.00833 * 2 1 3 29 29 H 1.09001 * 109.47347 * 179.97438 * 4 3 2 30 30 H 1.09001 * 109.46910 * 300.00441 * 4 3 2 31 31 H 1.09007 * 109.46981 * 59.99856 * 4 3 2 32 32 H 1.08998 * 109.47743 * 295.22328 * 5 3 2 33 33 H 1.09004 * 109.47238 * 55.22244 * 5 3 2 34 34 H 1.09000 * 109.47304 * 175.21784 * 5 3 2 35 35 H 0.96693 * 114.00132 * 300.00064 * 8 6 3 36 36 H 1.09001 * 113.46719 * 321.87472 * 12 11 9 37 37 H 1.08997 * 113.46409 * 92.25352 * 12 11 9 38 38 H 0.96695 * 114.00334 * 179.97438 * 14 13 12 39 39 H 0.96997 * 120.00066 * 180.02562 * 18 17 15 40 40 H 1.08999 * 113.46994 * 267.68662 * 23 11 9 41 41 H 1.09000 * 113.46701 * 38.07286 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5301 2.1637 1.2492 5 6 1.5300 2.1637 -1.2492 6 6 3.5700 1.4425 -0.0006 7 1 3.9330 1.0121 -0.9340 8 8 4.0468 0.6651 1.0996 9 6 4.0724 2.8574 0.1289 10 8 4.3574 3.3021 1.2206 11 7 4.2052 3.6285 -0.9685 12 6 4.5505 5.0317 -1.2412 13 6 3.7246 4.9295 -2.5310 14 8 2.3365 5.2245 -2.3629 15 6 4.3442 5.6211 -3.7180 16 1 5.2911 6.1299 -3.6129 17 6 3.7023 5.6045 -4.9381 18 7 2.5495 4.9846 -5.0662 19 14 4.4707 6.4611 -6.4095 20 1 5.7985 5.8601 -6.6944 21 1 3.5895 6.2974 -7.5934 22 1 4.6355 7.9063 -6.1105 23 6 4.0692 3.4366 -2.4203 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.8938 3.1912 1.2495 30 1 0.4401 2.1636 1.2493 31 1 1.8935 1.6498 2.1393 32 1 1.9615 1.7018 -2.1372 33 1 0.4434 2.0902 -1.2931 34 1 1.8217 3.2132 -1.2074 35 1 3.7619 0.9910 1.9642 36 1 4.1356 5.7300 -0.5143 37 1 5.6142 5.1904 -1.4184 38 1 1.8192 5.1597 -3.1772 39 1 2.0981 4.9725 -5.9247 40 1 5.0046 3.1704 -2.9125 41 1 3.2457 2.7779 -2.6958 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329805492.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:41 Heat of formation + Delta-G solvation = -109.341862 kcal Electronic energy + Delta-G solvation = -22897.637963 eV Core-core repulsion = 19585.736813 eV Total energy + Delta-G solvation = -3311.901150 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.34378 -38.49619 -36.86877 -35.05716 -34.02840 -32.23113 -30.62639 -28.90540 -27.24933 -26.56957 -25.17274 -25.02481 -23.55807 -20.32201 -18.90737 -18.41969 -17.67712 -16.71587 -16.43854 -15.72079 -15.19731 -14.76906 -14.61473 -14.25502 -14.06709 -13.95841 -13.26611 -12.93000 -12.71320 -12.43333 -12.32705 -12.11921 -11.94437 -11.69608 -11.63135 -11.35244 -11.32258 -11.18338 -11.06576 -10.83025 -10.52330 -10.48613 -10.38181 -10.25752 -10.04228 -9.52071 -9.00909 -8.78645 -8.39279 -7.88159 -6.44087 -4.53981 3.06442 3.13801 3.19916 3.22230 3.49064 4.15192 4.51215 4.74743 4.80041 4.85112 4.93765 5.15065 5.32015 5.45438 5.52999 5.57967 5.73269 5.76408 5.88495 5.97667 6.02065 6.04076 6.13340 6.14801 6.21760 6.29355 6.37463 6.38741 6.46663 6.53212 6.58808 6.69069 6.84224 7.09571 7.59364 7.65049 7.76779 8.44694 8.49672 8.68430 9.17326 9.43663 10.62406 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.025872 B = 0.005781 C = 0.005177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.007593 B = 4842.535996 C = 5407.732805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.105 4.105 3 C -0.085 4.085 4 C -0.147 4.147 5 C -0.159 4.159 6 C 0.107 3.893 7 H 0.113 0.887 8 O -0.543 6.543 9 C 0.514 3.486 10 O -0.563 6.563 11 N -0.629 5.629 12 C 0.105 3.895 13 C 0.244 3.756 14 O -0.569 6.569 15 C -0.534 4.534 16 H 0.071 0.929 17 C 0.074 3.926 18 N -0.898 5.898 19 Si 0.908 3.092 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.273 1.273 23 C 0.059 3.941 24 H 0.059 0.941 25 H 0.050 0.950 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.089 0.911 35 H 0.379 0.621 36 H 0.065 0.935 37 H 0.083 0.917 38 H 0.394 0.606 39 H 0.274 0.726 40 H 0.079 0.921 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.042 -7.469 4.684 9.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.143 4.143 3 C -0.086 4.086 4 C -0.204 4.204 5 C -0.216 4.216 6 C 0.045 3.955 7 H 0.130 0.870 8 O -0.349 6.349 9 C 0.304 3.696 10 O -0.444 6.444 11 N -0.363 5.363 12 C -0.018 4.018 13 C 0.202 3.798 14 O -0.382 6.382 15 C -0.572 4.572 16 H 0.089 0.911 17 C -0.129 4.129 18 N -0.538 5.538 19 Si 0.735 3.265 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.199 1.199 23 C -0.064 4.064 24 H 0.078 0.922 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.107 0.893 35 H 0.228 0.772 36 H 0.083 0.917 37 H 0.101 0.899 38 H 0.251 0.749 39 H 0.085 0.915 40 H 0.097 0.903 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.620 -7.686 5.444 9.776 hybrid contribution 0.057 0.557 -1.063 1.202 sum -2.563 -7.129 4.381 8.751 Atomic orbital electron populations 1.21907 0.95910 1.01167 1.02252 1.21452 0.95651 0.94899 1.02300 1.21106 0.93107 0.96666 0.97690 1.21955 1.01381 1.00910 0.96143 1.22283 1.01198 1.02887 0.95217 1.21839 0.93574 0.88688 0.91431 0.86977 1.86518 1.77430 1.53735 1.17183 1.20839 0.78019 0.87579 0.83212 1.90624 1.52983 1.74417 1.26350 1.49770 1.66057 1.13352 1.07074 1.23344 0.99623 0.81521 0.97276 1.19497 0.81242 0.88612 0.90455 1.86025 1.19646 1.91888 1.40630 1.21390 1.07148 1.35391 0.93311 0.91063 1.25053 0.94685 0.93987 0.99180 1.69240 1.15586 1.42503 1.26466 0.86376 0.79159 0.80141 0.80793 1.19904 1.20984 1.19853 1.24501 1.01097 1.04134 0.76629 0.92164 0.93126 0.92565 0.92005 0.91533 0.91892 0.91896 0.92915 0.92359 0.92180 0.89253 0.77154 0.91671 0.89854 0.74950 0.91519 0.90277 0.90622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.68 9.22 37.16 0.34 -1.34 16 2 C -0.11 -1.28 4.79 -26.73 -0.13 -1.41 16 3 C -0.08 -1.22 0.41 -154.51 -0.06 -1.28 16 4 C -0.15 -2.10 7.48 37.16 0.28 -1.82 16 5 C -0.16 -2.51 6.59 37.16 0.24 -2.27 16 6 C 0.11 1.75 2.58 -27.88 -0.07 1.68 16 7 H 0.11 1.79 8.01 -51.93 -0.42 1.38 16 8 O -0.54 -8.53 12.27 -53.74 -0.66 -9.19 16 9 C 0.51 10.21 5.56 -10.98 -0.06 10.15 16 10 O -0.56 -12.56 16.50 -12.95 -0.21 -12.77 16 11 N -0.63 -12.81 2.91 -185.01 -0.54 -13.35 16 12 C 0.10 2.23 8.03 -8.50 -0.07 2.16 16 13 C 0.24 5.55 1.59 -91.19 -0.14 5.41 16 14 O -0.57 -13.62 12.17 -35.23 -0.43 -14.05 16 15 C -0.53 -12.91 8.69 -34.44 -0.30 -13.21 16 16 H 0.07 1.69 7.81 -52.48 -0.41 1.28 16 17 C 0.07 1.76 5.40 -17.82 -0.10 1.67 16 18 N -0.90 -21.74 11.01 55.43 0.61 -21.13 16 19 Si 0.91 18.93 29.54 -169.99 -5.02 13.91 16 20 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 21 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 22 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 23 C 0.06 1.21 6.82 -8.44 -0.06 1.15 16 24 H 0.06 0.67 6.33 -51.93 -0.33 0.34 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.59 6.43 -51.93 -0.33 0.25 16 27 H 0.06 0.75 8.14 -51.92 -0.42 0.33 16 28 H 0.07 0.79 7.55 -51.93 -0.39 0.40 16 29 H 0.06 1.09 6.72 -51.93 -0.35 0.74 16 30 H 0.06 0.80 6.43 -51.93 -0.33 0.47 16 31 H 0.05 0.68 6.89 -51.93 -0.36 0.32 16 32 H 0.06 0.92 6.60 -51.93 -0.34 0.57 16 33 H 0.06 0.87 6.19 -51.93 -0.32 0.55 16 34 H 0.09 1.69 4.74 -51.93 -0.25 1.44 16 35 H 0.38 5.30 7.13 45.56 0.32 5.63 16 36 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 37 H 0.08 1.66 8.10 -51.93 -0.42 1.24 16 38 H 0.39 9.64 6.33 45.56 0.29 9.93 16 39 H 0.27 6.37 8.31 -40.82 -0.34 6.03 16 40 H 0.08 1.58 8.10 -51.93 -0.42 1.16 16 41 H 0.08 1.50 5.06 -51.93 -0.26 1.24 16 LS Contribution 313.98 15.07 4.73 4.73 Total: -1.00 -26.36 313.98 -6.37 -32.73 By element: Atomic # 1 Polarization: 22.95 SS G_CDS: -4.72 Total: 18.23 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: -0.12 Total: 0.89 kcal Atomic # 7 Polarization: -34.55 SS G_CDS: 0.07 Total: -34.48 kcal Atomic # 8 Polarization: -34.70 SS G_CDS: -1.30 Total: -36.00 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.02 Total: 13.91 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -26.36 -6.37 -32.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329805492.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.615 kcal (2) G-P(sol) polarization free energy of solvation -26.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds