Wall clock time and date at job start Mon Mar 30 2020 00:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52994 * 109.47023 * 2 1 4 4 C 1.52998 * 109.47274 * 60.00243 * 3 2 1 5 5 C 1.53001 * 109.47295 * 300.00093 * 3 2 1 6 6 C 1.52998 * 109.47097 * 180.02562 * 3 2 1 7 7 H 1.09000 * 109.47288 * 65.22980 * 6 3 2 8 8 O 1.42903 * 109.47023 * 305.22969 * 6 3 2 9 9 C 1.50701 * 109.47106 * 185.23093 * 6 3 2 10 10 O 1.21276 * 120.00117 * 94.77260 * 9 6 3 11 11 N 1.34777 * 119.99990 * 274.76332 * 9 6 3 12 12 C 1.47066 * 136.05716 * 174.47952 * 11 9 6 13 13 C 1.53497 * 88.04869 * 207.06359 * 12 11 9 14 14 O 1.42899 * 114.20808 * 87.55105 * 13 12 11 15 15 C 1.50703 * 114.20650 * 220.37307 * 13 12 11 16 16 H 1.08004 * 119.99801 * 0.02562 * 15 13 12 17 17 C 1.37875 * 120.00141 * 180.02562 * 15 13 12 18 18 N 1.31518 * 119.99954 * 359.97438 * 17 15 13 19 19 Si 1.86800 * 120.00133 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47082 * 59.99869 * 19 17 15 21 21 H 1.48491 * 109.47211 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47093 * 300.00208 * 19 17 15 23 23 C 1.47066 * 136.05681 * 354.43829 * 11 9 6 24 24 H 1.08995 * 109.46911 * 59.99663 * 1 2 3 25 25 H 1.09001 * 109.47108 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46534 * 299.99709 * 1 2 3 27 27 H 1.09008 * 109.46566 * 240.00165 * 2 1 3 28 28 H 1.08994 * 109.47144 * 120.00833 * 2 1 3 29 29 H 1.09001 * 109.47347 * 179.97438 * 4 3 2 30 30 H 1.09001 * 109.46910 * 300.00441 * 4 3 2 31 31 H 1.09007 * 109.46981 * 59.99856 * 4 3 2 32 32 H 1.08998 * 109.47743 * 295.22328 * 5 3 2 33 33 H 1.09004 * 109.47238 * 55.22244 * 5 3 2 34 34 H 1.09000 * 109.47304 * 175.21784 * 5 3 2 35 35 H 0.96693 * 114.00132 * 300.00064 * 8 6 3 36 36 H 1.09001 * 113.46719 * 321.87472 * 12 11 9 37 37 H 1.08997 * 113.46409 * 92.25352 * 12 11 9 38 38 H 0.96695 * 114.00334 * 179.97438 * 14 13 12 39 39 H 0.96997 * 120.00066 * 180.02562 * 18 17 15 40 40 H 1.08999 * 113.46994 * 267.68662 * 23 11 9 41 41 H 1.09000 * 113.46701 * 38.07286 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5301 2.1637 1.2492 5 6 1.5300 2.1637 -1.2492 6 6 3.5700 1.4425 -0.0006 7 1 3.9330 1.0121 -0.9340 8 8 4.0468 0.6651 1.0996 9 6 4.0724 2.8574 0.1289 10 8 4.3574 3.3021 1.2206 11 7 4.2052 3.6285 -0.9685 12 6 4.5505 5.0317 -1.2412 13 6 3.7246 4.9295 -2.5310 14 8 2.3365 5.2245 -2.3629 15 6 4.3442 5.6211 -3.7180 16 1 5.2911 6.1299 -3.6129 17 6 3.7023 5.6045 -4.9381 18 7 2.5495 4.9846 -5.0662 19 14 4.4707 6.4611 -6.4095 20 1 5.7985 5.8601 -6.6944 21 1 3.5895 6.2974 -7.5934 22 1 4.6355 7.9063 -6.1105 23 6 4.0692 3.4366 -2.4203 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.8938 3.1912 1.2495 30 1 0.4401 2.1636 1.2493 31 1 1.8935 1.6498 2.1393 32 1 1.9615 1.7018 -2.1372 33 1 0.4434 2.0902 -1.2931 34 1 1.8217 3.2132 -1.2074 35 1 3.7619 0.9910 1.9642 36 1 4.1356 5.7300 -0.5143 37 1 5.6142 5.1904 -1.4184 38 1 1.8192 5.1597 -3.1772 39 1 2.0981 4.9725 -5.9247 40 1 5.0046 3.1704 -2.9125 41 1 3.2457 2.7779 -2.6958 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329805492.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:40 Heat of formation + Delta-G solvation = -127.276520 kcal Electronic energy + Delta-G solvation = -22898.415668 eV Core-core repulsion = 19585.736813 eV Total energy + Delta-G solvation = -3312.678855 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.85309 -40.02566 -38.37108 -36.31863 -35.80052 -34.08759 -31.80836 -30.40518 -28.54979 -28.04947 -26.74014 -26.66846 -24.70685 -21.97383 -20.29170 -19.80032 -19.41938 -18.26531 -17.93648 -17.20088 -16.96226 -16.14211 -15.98681 -15.81115 -15.43143 -15.18493 -14.88023 -14.52894 -14.25099 -13.81091 -13.63135 -13.59278 -13.41906 -13.10081 -12.86385 -12.78430 -12.75071 -12.58929 -12.48342 -12.27844 -12.20504 -11.91535 -11.71349 -11.41419 -11.29343 -11.22962 -10.69642 -10.46939 -10.13332 -9.57747 -8.25686 -6.41861 1.48840 1.49878 1.52127 1.58156 1.91203 2.41768 2.95934 3.24556 3.39327 3.59131 3.74436 3.77487 3.98536 4.15417 4.26574 4.35034 4.45622 4.55262 4.60786 4.62694 4.73680 4.78344 4.80587 4.89322 4.93025 4.95978 5.03535 5.08310 5.17813 5.23377 5.26139 5.36777 5.48416 5.63359 5.75364 5.93570 6.45287 6.62585 6.84728 7.07047 7.31810 7.53892 8.79684 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.025872 B = 0.005781 C = 0.005177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.007593 B = 4842.535996 C = 5407.732805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.100 4.100 3 C -0.077 4.077 4 C -0.143 4.143 5 C -0.154 4.154 6 C 0.115 3.885 7 H 0.119 0.881 8 O -0.542 6.542 9 C 0.509 3.491 10 O -0.591 6.591 11 N -0.628 5.628 12 C 0.102 3.898 13 C 0.229 3.771 14 O -0.577 6.577 15 C -0.555 4.555 16 H 0.070 0.930 17 C 0.037 3.963 18 N -0.912 5.912 19 Si 0.966 3.034 20 H -0.270 1.270 21 H -0.282 1.282 22 H -0.276 1.276 23 C 0.073 3.927 24 H 0.054 0.946 25 H 0.066 0.934 26 H 0.059 0.941 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.027 0.973 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.056 0.944 35 H 0.387 0.613 36 H 0.052 0.948 37 H 0.096 0.904 38 H 0.389 0.611 39 H 0.277 0.723 40 H 0.085 0.915 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.308 -8.867 4.403 10.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.137 4.137 3 C -0.078 4.078 4 C -0.200 4.200 5 C -0.211 4.211 6 C 0.052 3.948 7 H 0.136 0.864 8 O -0.349 6.349 9 C 0.300 3.700 10 O -0.474 6.474 11 N -0.362 5.362 12 C -0.021 4.021 13 C 0.188 3.812 14 O -0.390 6.390 15 C -0.593 4.593 16 H 0.088 0.912 17 C -0.164 4.164 18 N -0.552 5.552 19 Si 0.791 3.209 20 H -0.195 1.195 21 H -0.207 1.207 22 H -0.202 1.202 23 C -0.049 4.049 24 H 0.073 0.927 25 H 0.085 0.915 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.092 0.908 29 H 0.046 0.954 30 H 0.097 0.903 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.075 0.925 35 H 0.238 0.762 36 H 0.070 0.930 37 H 0.114 0.886 38 H 0.245 0.755 39 H 0.087 0.913 40 H 0.103 0.897 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.885 -9.095 5.173 10.854 hybrid contribution 0.126 1.023 -0.925 1.385 sum -2.759 -8.072 4.249 9.530 Atomic orbital electron populations 1.21894 0.94667 1.02282 1.02191 1.21422 0.96646 0.92794 1.02844 1.21072 0.91525 0.98246 0.96956 1.21921 1.02381 0.98862 0.96814 1.22198 1.02077 1.00916 0.95938 1.21852 0.94810 0.86141 0.91957 0.86355 1.86509 1.77603 1.53251 1.17524 1.21607 0.77169 0.88835 0.82426 1.90600 1.54158 1.75392 1.27250 1.49780 1.66124 1.12903 1.07350 1.23347 1.00077 0.82199 0.96458 1.19658 0.80654 0.90178 0.90739 1.86022 1.20395 1.92207 1.40347 1.21614 1.07442 1.36121 0.94151 0.91199 1.25670 0.95089 0.94445 1.01155 1.69299 1.16117 1.42828 1.26968 0.85484 0.78496 0.78845 0.78059 1.19481 1.20718 1.20180 1.24292 1.01443 1.02623 0.76584 0.92658 0.91481 0.92180 0.91687 0.90783 0.95421 0.90302 0.91381 0.92466 0.90908 0.92507 0.76241 0.92975 0.88617 0.75506 0.91327 0.89663 0.90068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 9.22 71.99 0.66 -2.19 16 2 C -0.10 -2.15 4.79 30.60 0.15 -2.00 16 3 C -0.08 -2.09 0.41 -52.18 -0.02 -2.11 16 4 C -0.14 -3.90 7.48 71.98 0.54 -3.36 16 5 C -0.15 -4.73 6.59 71.98 0.47 -4.26 16 6 C 0.11 3.59 2.58 29.85 0.08 3.67 16 7 H 0.12 3.58 8.01 -2.39 -0.02 3.56 16 8 O -0.54 -16.00 12.27 -131.28 -1.61 -17.61 16 9 C 0.51 20.08 5.56 87.66 0.49 20.57 16 10 O -0.59 -26.47 16.50 14.68 0.24 -26.23 16 11 N -0.63 -25.66 2.91 -858.05 -2.49 -28.15 16 12 C 0.10 4.41 8.03 83.18 0.67 5.08 16 13 C 0.23 10.53 1.59 -11.16 -0.02 10.51 16 14 O -0.58 -28.16 12.17 -148.98 -1.81 -29.97 16 15 C -0.56 -26.83 8.69 25.60 0.22 -26.60 16 16 H 0.07 3.31 7.81 -2.91 -0.02 3.29 16 17 C 0.04 1.77 5.40 84.65 0.46 2.23 16 18 N -0.91 -43.86 11.01 21.45 0.24 -43.62 16 19 Si 0.97 38.29 29.54 68.60 2.03 40.31 16 20 H -0.27 -10.46 7.11 99.48 0.71 -9.76 16 21 H -0.28 -10.98 7.11 99.48 0.71 -10.28 16 22 H -0.28 -11.03 7.11 99.48 0.71 -10.32 16 23 C 0.07 2.97 6.82 83.22 0.57 3.54 16 24 H 0.05 1.09 6.33 -2.39 -0.02 1.07 16 25 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.06 1.07 6.43 -2.39 -0.02 1.06 16 27 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 28 H 0.07 1.52 7.55 -2.39 -0.02 1.50 16 29 H 0.03 0.94 6.72 -2.39 -0.02 0.92 16 30 H 0.08 1.87 6.43 -2.39 -0.02 1.86 16 31 H 0.07 1.62 6.89 -2.38 -0.02 1.60 16 32 H 0.06 1.74 6.60 -2.39 -0.02 1.72 16 33 H 0.07 2.01 6.19 -2.39 -0.01 2.00 16 34 H 0.06 2.15 4.74 -2.39 -0.01 2.13 16 35 H 0.39 10.13 7.13 -74.06 -0.53 9.61 16 36 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 37 H 0.10 3.84 8.10 -2.39 -0.02 3.82 16 38 H 0.39 19.40 6.33 -74.06 -0.47 18.93 16 39 H 0.28 12.68 8.31 -92.71 -0.77 11.91 16 40 H 0.09 3.34 8.10 -2.39 -0.02 3.32 16 41 H 0.08 3.19 5.06 -2.39 -0.01 3.18 16 Total: -1.00 -55.27 313.98 0.91 -54.36 By element: Atomic # 1 Polarization: 45.78 SS G_CDS: 0.06 Total: 45.85 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: 4.26 Total: 5.07 kcal Atomic # 7 Polarization: -69.52 SS G_CDS: -2.26 Total: -71.78 kcal Atomic # 8 Polarization: -70.63 SS G_CDS: -3.18 Total: -73.81 kcal Atomic # 14 Polarization: 38.29 SS G_CDS: 2.03 Total: 40.31 kcal Total: -55.27 0.91 -54.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329805492.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.917 kcal (2) G-P(sol) polarization free energy of solvation -55.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds