Wall clock time and date at job start Mon Mar 30 2020 00:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.99840 * 2 1 4 4 O 1.42899 * 109.47644 * 64.63795 * 3 2 1 5 5 C 1.54316 * 109.98955 * 238.97030 * 2 1 3 6 6 C 1.55163 * 102.86086 * 263.05090 * 5 2 1 7 7 H 1.08997 * 111.00384 * 82.37603 * 6 5 2 8 8 O 1.42904 * 111.00253 * 206.22758 * 6 5 2 9 9 C 1.54903 * 101.58035 * 324.30065 * 6 5 2 10 10 N 1.47026 * 109.87977 * 121.09136 * 2 1 3 11 11 C 1.34776 * 125.64989 * 300.51106 * 10 2 1 12 12 O 1.21282 * 119.99940 * 359.72259 * 11 10 2 13 13 C 1.50703 * 119.99978 * 179.71757 * 11 10 2 14 14 C 1.52996 * 109.46946 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.46947 * 179.97438 * 14 13 11 16 16 C 1.50706 * 109.47238 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99515 * 0.02562 * 16 15 14 18 18 C 1.37870 * 120.00176 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00200 * 180.02562 * 18 16 15 20 20 Si 1.86802 * 120.00139 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.47145 * 89.99836 * 20 18 16 22 22 H 1.48496 * 109.47547 * 210.00333 * 20 18 16 23 23 H 1.48499 * 109.47030 * 330.00237 * 20 18 16 24 24 H 1.09004 * 109.47535 * 300.36217 * 1 2 3 25 25 H 1.09003 * 109.47265 * 60.35992 * 1 2 3 26 26 H 1.08997 * 109.47428 * 180.35986 * 1 2 3 27 27 H 1.09007 * 109.47065 * 184.64094 * 3 2 1 28 28 H 1.09003 * 109.47453 * 304.63687 * 3 2 1 29 29 H 0.96703 * 114.00400 * 179.97438 * 4 3 2 30 30 H 1.08992 * 110.92901 * 144.63630 * 5 2 1 31 31 H 1.08994 * 110.58628 * 21.30419 * 5 2 1 32 32 H 0.96702 * 114.00038 * 173.64966 * 8 6 5 33 33 H 1.08999 * 110.37156 * 278.17014 * 9 6 5 34 34 H 1.09005 * 110.36671 * 155.85080 * 9 6 5 35 35 H 1.08992 * 109.46894 * 60.00096 * 13 11 10 36 36 H 1.08996 * 109.46805 * 300.00246 * 13 11 10 37 37 H 1.09001 * 109.47372 * 60.00128 * 14 13 11 38 38 H 1.09004 * 109.47108 * 299.99872 * 14 13 11 39 39 H 1.09001 * 109.46832 * 59.99979 * 15 14 13 40 40 H 1.09000 * 109.47611 * 300.00276 * 15 14 13 41 41 H 0.96999 * 120.00061 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0532 1.4377 0.0000 4 8 1.6739 2.0828 1.2174 5 6 2.0575 -0.7475 -1.2427 6 6 2.3475 -2.1693 -0.6931 7 1 1.4381 -2.7694 -0.6627 8 8 3.3618 -2.8187 -1.4623 9 6 2.8522 -1.8530 0.7368 10 7 2.0299 -0.7140 1.1840 11 6 1.7741 -0.3851 2.4658 12 8 1.0806 0.5774 2.7180 13 6 2.3497 -1.2134 3.5855 14 6 1.9098 -0.6299 4.9296 15 6 2.4936 -1.4712 6.0664 16 6 2.0608 -0.8961 7.3904 17 1 1.4318 -0.0186 7.4183 18 6 2.4677 -1.4902 8.5662 19 7 2.0896 -0.9886 9.7216 20 14 3.5550 -3.0084 8.5180 21 1 4.9816 -2.5959 8.5228 22 1 3.2797 -3.8525 9.7083 23 1 3.2681 -3.7837 7.2844 24 1 -0.3634 0.5195 0.8867 25 1 -0.3634 0.5082 -0.8932 26 1 -0.3634 -1.0276 0.0065 27 1 3.1400 1.4288 -0.0832 28 1 1.6286 1.9790 -0.8455 29 1 1.9732 2.9997 1.2865 30 1 2.9707 -0.2850 -1.6167 31 1 1.2951 -0.7831 -2.0208 32 1 3.6460 -3.6691 -1.1004 33 1 3.9058 -1.5746 0.7144 34 1 2.6996 -2.7112 1.3915 35 1 3.4378 -1.2027 3.5230 36 1 1.9909 -2.2391 3.5001 37 1 0.8216 -0.6409 4.9919 38 1 2.2682 0.3960 5.0152 39 1 3.5818 -1.4605 6.0043 40 1 2.1348 -2.4969 5.9807 41 1 2.3756 -1.4068 10.5488 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332213162.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:12 Heat of formation + Delta-G solvation = -137.866131 kcal Electronic energy + Delta-G solvation = -21812.068088 eV Core-core repulsion = 18498.930033 eV Total energy + Delta-G solvation = -3313.138055 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.60662 -38.03808 -36.86436 -35.47963 -34.20555 -32.49970 -31.75383 -30.16197 -28.22702 -26.79355 -25.48899 -23.93777 -22.20091 -20.98801 -19.76179 -18.40581 -17.84203 -17.21396 -16.68098 -16.54921 -15.93742 -15.50858 -14.69308 -14.60586 -14.14470 -13.99194 -13.84193 -13.68226 -13.27076 -12.72133 -12.67296 -12.58503 -12.23634 -12.03109 -11.90356 -11.49417 -11.35824 -11.30763 -11.02455 -10.88170 -10.73717 -10.47814 -9.93009 -9.88394 -9.70455 -9.63990 -9.19727 -9.03247 -8.52108 -8.48188 -5.97949 -3.95324 2.91208 3.09534 3.33122 3.40007 3.43115 3.66982 4.11758 4.23100 4.37742 4.49450 4.60466 4.81348 4.92353 5.06821 5.17992 5.23923 5.29235 5.33178 5.35564 5.46696 5.51430 5.58071 5.63783 5.69327 5.70136 5.84540 6.13294 6.26828 6.50089 6.62989 6.76684 6.97660 7.18182 7.42758 7.50608 7.70424 7.76017 7.86323 8.61929 8.65094 9.09243 9.64340 11.15867 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.024727 B = 0.004268 C = 0.003788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.106516 B = 6558.269661 C = 7389.645401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.168 3.832 3 C 0.070 3.930 4 O -0.526 6.526 5 C -0.115 4.115 6 C 0.092 3.908 7 H 0.076 0.924 8 O -0.558 6.558 9 C 0.069 3.931 10 N -0.617 5.617 11 C 0.523 3.477 12 O -0.483 6.483 13 C -0.136 4.136 14 C -0.085 4.085 15 C -0.014 4.014 16 C -0.517 4.517 17 H 0.073 0.927 18 C 0.064 3.936 19 N -0.905 5.905 20 Si 0.881 3.119 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.266 1.266 24 H 0.084 0.916 25 H 0.059 0.941 26 H 0.053 0.947 27 H 0.040 0.960 28 H 0.046 0.954 29 H 0.363 0.637 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.383 0.617 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.010 0.990 40 H 0.014 0.986 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.070 -2.070 -26.064 26.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.082 3.918 3 C -0.010 4.010 4 O -0.329 6.329 5 C -0.153 4.153 6 C 0.032 3.968 7 H 0.094 0.906 8 O -0.363 6.363 9 C -0.056 4.056 10 N -0.356 5.356 11 C 0.312 3.688 12 O -0.354 6.354 13 C -0.176 4.176 14 C -0.123 4.123 15 C -0.052 4.052 16 C -0.555 4.555 17 H 0.091 0.909 18 C -0.136 4.136 19 N -0.545 5.545 20 Si 0.708 3.292 21 H -0.204 1.204 22 H -0.215 1.215 23 H -0.191 1.191 24 H 0.103 0.897 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.208 0.792 30 H 0.105 0.895 31 H 0.107 0.893 32 H 0.231 0.769 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.028 0.972 40 H 0.032 0.968 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.327 -1.582 -25.859 25.941 hybrid contribution 1.082 -0.865 0.255 1.409 sum 2.409 -2.447 -25.604 25.833 Atomic orbital electron populations 1.22121 0.93508 1.02073 1.03590 1.20921 0.95081 0.90915 0.84838 1.22495 0.97510 0.92734 0.88216 1.87115 1.79908 1.28984 1.36876 1.22664 1.02556 0.93652 0.96394 1.22932 0.90634 0.93763 0.89473 0.90577 1.86504 1.58100 1.38850 1.52824 1.22980 0.96159 0.90498 0.95913 1.48576 1.52290 1.29800 1.04977 1.20752 0.81047 0.85432 0.81533 1.90733 1.36285 1.26584 1.81799 1.21846 1.01477 0.99523 0.94717 1.21249 1.00982 0.99809 0.90297 1.19606 0.95532 0.95495 0.94524 1.21173 1.31625 1.13899 0.88794 0.90926 1.25046 0.95988 0.97151 0.95451 1.69924 1.46126 1.41031 0.97376 0.86765 0.81142 0.83671 0.77589 1.20367 1.21458 1.19107 0.89740 0.92221 0.92756 0.94166 0.93545 0.79152 0.89467 0.89258 0.76877 0.90802 0.90144 0.89971 0.90003 0.92157 0.92074 0.97212 0.96791 0.92829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 8.27 37.15 0.31 -1.46 16 2 C 0.17 1.84 0.79 -130.85 -0.10 1.74 16 3 C 0.07 0.76 6.03 37.16 0.22 0.99 16 4 O -0.53 -7.37 9.34 -59.94 -0.56 -7.93 16 5 C -0.11 -0.95 5.75 -24.90 -0.14 -1.09 16 6 C 0.09 0.72 4.43 -24.58 -0.11 0.61 16 7 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 8 O -0.56 -4.11 13.47 -35.23 -0.47 -4.58 16 9 C 0.07 0.64 6.42 -2.53 -0.02 0.63 16 10 N -0.62 -7.86 2.82 -155.82 -0.44 -8.30 16 11 C 0.52 8.68 7.23 -10.98 -0.08 8.60 16 12 O -0.48 -9.64 11.64 -19.16 -0.22 -9.86 16 13 C -0.14 -2.25 4.71 -27.88 -0.13 -2.38 16 14 C -0.09 -1.83 4.44 -26.73 -0.12 -1.95 16 15 C -0.01 -0.35 4.04 -27.88 -0.11 -0.46 16 16 C -0.52 -15.33 9.66 -34.44 -0.33 -15.66 16 17 H 0.07 2.34 7.99 -52.49 -0.42 1.92 16 18 C 0.06 1.92 5.47 -17.82 -0.10 1.83 16 19 N -0.91 -28.67 13.96 55.43 0.77 -27.90 16 20 Si 0.88 22.00 27.47 -169.99 -4.67 17.33 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 24 H 0.08 1.27 6.46 -51.93 -0.34 0.94 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.04 0.42 8.06 -51.92 -0.42 0.00 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.36 3.68 9.12 45.56 0.42 4.09 16 30 H 0.09 0.71 7.80 -51.93 -0.40 0.30 16 31 H 0.09 0.62 7.83 -51.93 -0.41 0.21 16 32 H 0.38 1.27 9.11 45.56 0.42 1.69 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.08 0.67 7.48 -51.93 -0.39 0.28 16 35 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.08 1.21 7.85 -51.93 -0.41 0.81 16 37 H 0.06 1.37 8.10 -51.93 -0.42 0.95 16 38 H 0.06 1.39 8.10 -51.93 -0.42 0.97 16 39 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 40 H 0.01 0.33 7.20 -51.93 -0.37 -0.04 16 41 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 LS Contribution 326.51 15.07 4.92 4.92 Total: -1.00 -36.52 326.51 -6.65 -43.16 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -5.26 Total: 1.77 kcal Atomic # 6 Polarization: -7.91 SS G_CDS: -0.71 Total: -8.62 kcal Atomic # 7 Polarization: -36.53 SS G_CDS: 0.33 Total: -36.19 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: -1.26 Total: -22.38 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.67 Total: 17.33 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -36.52 -6.65 -43.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332213162.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.703 kcal (2) G-P(sol) polarization free energy of solvation -36.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds