Wall clock time and date at job start Mon Mar 30 2020 00:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.99840 * 2 1 4 4 O 1.42899 * 109.47644 * 64.63795 * 3 2 1 5 5 C 1.54316 * 109.98955 * 238.97030 * 2 1 3 6 6 C 1.55163 * 102.86086 * 263.05090 * 5 2 1 7 7 H 1.08997 * 111.00384 * 82.37603 * 6 5 2 8 8 O 1.42904 * 111.00253 * 206.22758 * 6 5 2 9 9 C 1.54903 * 101.58035 * 324.30065 * 6 5 2 10 10 N 1.47026 * 109.87977 * 121.09136 * 2 1 3 11 11 C 1.34776 * 125.64989 * 300.51106 * 10 2 1 12 12 O 1.21282 * 119.99940 * 359.72259 * 11 10 2 13 13 C 1.50703 * 119.99978 * 179.71757 * 11 10 2 14 14 C 1.52996 * 109.46946 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.46947 * 179.97438 * 14 13 11 16 16 C 1.50706 * 109.47238 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99515 * 0.02562 * 16 15 14 18 18 C 1.37870 * 120.00176 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00200 * 180.02562 * 18 16 15 20 20 Si 1.86802 * 120.00139 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.47145 * 89.99836 * 20 18 16 22 22 H 1.48496 * 109.47547 * 210.00333 * 20 18 16 23 23 H 1.48499 * 109.47030 * 330.00237 * 20 18 16 24 24 H 1.09004 * 109.47535 * 300.36217 * 1 2 3 25 25 H 1.09003 * 109.47265 * 60.35992 * 1 2 3 26 26 H 1.08997 * 109.47428 * 180.35986 * 1 2 3 27 27 H 1.09007 * 109.47065 * 184.64094 * 3 2 1 28 28 H 1.09003 * 109.47453 * 304.63687 * 3 2 1 29 29 H 0.96703 * 114.00400 * 179.97438 * 4 3 2 30 30 H 1.08992 * 110.92901 * 144.63630 * 5 2 1 31 31 H 1.08994 * 110.58628 * 21.30419 * 5 2 1 32 32 H 0.96702 * 114.00038 * 173.64966 * 8 6 5 33 33 H 1.08999 * 110.37156 * 278.17014 * 9 6 5 34 34 H 1.09005 * 110.36671 * 155.85080 * 9 6 5 35 35 H 1.08992 * 109.46894 * 60.00096 * 13 11 10 36 36 H 1.08996 * 109.46805 * 300.00246 * 13 11 10 37 37 H 1.09001 * 109.47372 * 60.00128 * 14 13 11 38 38 H 1.09004 * 109.47108 * 299.99872 * 14 13 11 39 39 H 1.09001 * 109.46832 * 59.99979 * 15 14 13 40 40 H 1.09000 * 109.47611 * 300.00276 * 15 14 13 41 41 H 0.96999 * 120.00061 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0532 1.4377 0.0000 4 8 1.6739 2.0828 1.2174 5 6 2.0575 -0.7475 -1.2427 6 6 2.3475 -2.1693 -0.6931 7 1 1.4381 -2.7694 -0.6627 8 8 3.3618 -2.8187 -1.4623 9 6 2.8522 -1.8530 0.7368 10 7 2.0299 -0.7140 1.1840 11 6 1.7741 -0.3851 2.4658 12 8 1.0806 0.5774 2.7180 13 6 2.3497 -1.2134 3.5855 14 6 1.9098 -0.6299 4.9296 15 6 2.4936 -1.4712 6.0664 16 6 2.0608 -0.8961 7.3904 17 1 1.4318 -0.0186 7.4183 18 6 2.4677 -1.4902 8.5662 19 7 2.0896 -0.9886 9.7216 20 14 3.5550 -3.0084 8.5180 21 1 4.9816 -2.5959 8.5228 22 1 3.2797 -3.8525 9.7083 23 1 3.2681 -3.7837 7.2844 24 1 -0.3634 0.5195 0.8867 25 1 -0.3634 0.5082 -0.8932 26 1 -0.3634 -1.0276 0.0065 27 1 3.1400 1.4288 -0.0832 28 1 1.6286 1.9790 -0.8455 29 1 1.9732 2.9997 1.2865 30 1 2.9707 -0.2850 -1.6167 31 1 1.2951 -0.7831 -2.0208 32 1 3.6460 -3.6691 -1.1004 33 1 3.9058 -1.5746 0.7144 34 1 2.6996 -2.7112 1.3915 35 1 3.4378 -1.2027 3.5230 36 1 1.9909 -2.2391 3.5001 37 1 0.8216 -0.6409 4.9919 38 1 2.2682 0.3960 5.0152 39 1 3.5818 -1.4605 6.0043 40 1 2.1348 -2.4969 5.9807 41 1 2.3756 -1.4068 10.5488 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332213162.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:11 Heat of formation + Delta-G solvation = -167.118155 kcal Electronic energy + Delta-G solvation = -21813.336551 eV Core-core repulsion = 18498.930033 eV Total energy + Delta-G solvation = -3314.406518 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.53597 -39.09724 -37.68888 -36.33142 -36.04925 -34.18032 -33.16019 -30.93751 -29.99170 -27.64892 -26.34910 -25.65186 -23.13959 -22.27809 -21.24425 -19.45914 -18.82318 -18.47682 -18.11829 -17.63676 -16.90945 -16.72332 -16.23046 -15.67426 -15.42506 -15.02850 -14.87222 -14.70601 -14.56874 -14.23112 -13.87678 -13.80182 -13.44368 -13.19299 -12.98588 -12.85168 -12.66504 -12.45247 -12.18574 -12.05283 -11.79094 -11.75425 -11.60089 -11.49657 -11.32158 -11.07007 -10.80196 -10.75232 -10.40789 -9.51905 -8.27764 -6.33466 1.37712 1.41459 1.53566 1.87074 1.97099 2.38947 3.01438 3.07139 3.41400 3.60307 3.63469 3.87721 3.98652 4.13173 4.15803 4.18858 4.23902 4.38471 4.49506 4.55228 4.64227 4.70292 4.78173 4.85160 4.86493 4.89903 4.93915 4.97681 5.03810 5.09714 5.33394 5.54040 5.59426 5.61277 5.67993 6.30724 6.63445 6.74971 6.87196 6.96205 7.30770 7.46084 8.90046 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.024727 B = 0.004268 C = 0.003788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.106516 B = 6558.269661 C = 7389.645401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.159 3.841 3 C 0.064 3.936 4 O -0.558 6.558 5 C -0.108 4.108 6 C 0.102 3.898 7 H 0.087 0.913 8 O -0.566 6.566 9 C 0.062 3.938 10 N -0.614 5.614 11 C 0.519 3.481 12 O -0.530 6.530 13 C -0.125 4.125 14 C -0.076 4.076 15 C -0.008 4.008 16 C -0.540 4.540 17 H 0.019 0.981 18 C -0.002 4.002 19 N -0.957 5.957 20 Si 0.962 3.038 21 H -0.264 1.264 22 H -0.285 1.285 23 H -0.237 1.237 24 H 0.041 0.959 25 H 0.081 0.919 26 H 0.059 0.941 27 H 0.045 0.955 28 H 0.069 0.931 29 H 0.374 0.626 30 H 0.091 0.909 31 H 0.107 0.893 32 H 0.401 0.599 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.104 0.896 36 H 0.108 0.892 37 H 0.035 0.965 38 H 0.034 0.966 39 H 0.027 0.973 40 H 0.029 0.971 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.975 -4.953 -28.896 29.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.074 3.926 3 C -0.015 4.015 4 O -0.363 6.363 5 C -0.146 4.146 6 C 0.043 3.957 7 H 0.104 0.896 8 O -0.374 6.374 9 C -0.061 4.061 10 N -0.351 5.351 11 C 0.308 3.692 12 O -0.405 6.405 13 C -0.165 4.165 14 C -0.114 4.114 15 C -0.045 4.045 16 C -0.578 4.578 17 H 0.037 0.963 18 C -0.198 4.198 19 N -0.598 5.598 20 Si 0.784 3.216 21 H -0.189 1.189 22 H -0.210 1.210 23 H -0.160 1.160 24 H 0.060 0.940 25 H 0.100 0.900 26 H 0.078 0.922 27 H 0.063 0.937 28 H 0.087 0.913 29 H 0.220 0.780 30 H 0.110 0.890 31 H 0.125 0.875 32 H 0.252 0.748 33 H 0.097 0.903 34 H 0.113 0.887 35 H 0.122 0.878 36 H 0.126 0.874 37 H 0.054 0.946 38 H 0.053 0.947 39 H 0.045 0.955 40 H 0.048 0.952 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.252 -4.487 -28.752 29.281 hybrid contribution 0.437 0.133 1.127 1.216 sum 3.689 -4.354 -27.625 28.208 Atomic orbital electron populations 1.22053 0.94099 1.02073 1.02565 1.21188 0.94772 0.91313 0.85301 1.22684 0.97965 0.92916 0.87896 1.87098 1.80456 1.30086 1.38679 1.22647 1.03175 0.93590 0.95185 1.22803 0.91067 0.93683 0.88196 0.89571 1.86475 1.57932 1.40147 1.52865 1.23257 0.95908 0.89640 0.97321 1.48477 1.51747 1.30613 1.04263 1.20673 0.80748 0.84906 0.82903 1.90730 1.38431 1.28513 1.82838 1.21671 1.02745 1.00304 0.91759 1.20997 0.99204 0.98389 0.92797 1.19534 0.96432 0.96096 0.92435 1.21540 1.31321 1.12822 0.92071 0.96299 1.26186 0.97707 1.01405 0.94515 1.70106 1.47895 1.43285 0.98482 0.85497 0.78795 0.78462 0.78882 1.18891 1.21047 1.15980 0.93970 0.90021 0.92154 0.93653 0.91338 0.77952 0.89027 0.87484 0.74760 0.90253 0.88674 0.87780 0.87400 0.94630 0.94698 0.95505 0.95229 0.92474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.28 8.27 71.98 0.60 -2.68 16 2 C 0.16 3.20 0.79 3.95 0.00 3.20 16 3 C 0.06 1.33 6.03 71.98 0.43 1.76 16 4 O -0.56 -16.05 9.34 -125.35 -1.17 -17.22 16 5 C -0.11 -1.42 5.75 31.78 0.18 -1.24 16 6 C 0.10 1.21 4.43 31.99 0.14 1.35 16 7 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 8 O -0.57 -6.03 13.47 -148.98 -2.01 -8.04 16 9 C 0.06 0.94 6.42 86.85 0.56 1.50 16 10 N -0.61 -14.50 2.82 -765.27 -2.16 -16.66 16 11 C 0.52 16.97 7.23 87.66 0.63 17.60 16 12 O -0.53 -22.00 11.64 20.59 0.24 -21.76 16 13 C -0.13 -3.93 4.71 29.85 0.14 -3.79 16 14 C -0.08 -3.31 4.44 30.59 0.14 -3.17 16 15 C -0.01 -0.37 4.04 29.85 0.12 -0.25 16 16 C -0.54 -33.08 9.66 25.60 0.25 -32.83 16 17 H 0.02 1.30 7.99 -2.91 -0.02 1.28 16 18 C 0.00 -0.14 5.47 84.65 0.46 0.33 16 19 N -0.96 -62.44 13.96 21.44 0.30 -62.14 16 20 Si 0.96 44.42 27.47 68.60 1.88 46.30 16 21 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 22 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 23 H -0.24 -9.76 6.54 99.48 0.65 -9.11 16 24 H 0.04 1.30 6.46 -2.39 -0.02 1.29 16 25 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.05 0.87 8.06 -2.38 -0.02 0.85 16 28 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.37 7.97 9.12 -74.06 -0.68 7.30 16 30 H 0.09 1.16 7.80 -2.39 -0.02 1.14 16 31 H 0.11 1.06 7.83 -2.39 -0.02 1.04 16 32 H 0.40 0.99 9.11 -74.06 -0.67 0.31 16 33 H 0.08 1.16 8.14 -2.39 -0.02 1.15 16 34 H 0.09 1.19 7.48 -2.38 -0.02 1.17 16 35 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16 36 H 0.11 2.83 7.85 -2.39 -0.02 2.82 16 37 H 0.03 1.68 8.10 -2.39 -0.02 1.66 16 38 H 0.03 1.66 8.10 -2.38 -0.02 1.64 16 39 H 0.03 1.20 7.57 -2.39 -0.02 1.19 16 40 H 0.03 1.34 7.20 -2.39 -0.02 1.32 16 41 H 0.27 16.06 8.31 -92.71 -0.77 15.29 16 Total: -1.00 -83.57 326.51 0.36 -83.21 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -0.38 Total: 14.51 kcal Atomic # 6 Polarization: -21.87 SS G_CDS: 3.66 Total: -18.21 kcal Atomic # 7 Polarization: -76.93 SS G_CDS: -1.86 Total: -78.79 kcal Atomic # 8 Polarization: -44.08 SS G_CDS: -2.94 Total: -47.02 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 1.88 Total: 46.30 kcal Total: -83.57 0.36 -83.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332213162.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.908 kcal (2) G-P(sol) polarization free energy of solvation -83.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds