Wall clock time and date at job start Mon Mar 30 2020 00:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00063 * 2 1 4 4 H 1.48502 * 109.47487 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47413 * 300.00127 * 3 2 1 6 6 H 1.48500 * 109.47134 * 59.99945 * 3 2 1 7 7 C 1.37879 * 120.00191 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99946 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99795 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.47191 * 300.00048 * 9 7 2 11 11 O 1.42906 * 109.47175 * 59.99943 * 9 7 2 12 12 C 1.53001 * 109.46979 * 180.02562 * 9 7 2 13 13 N 1.46898 * 109.46887 * 180.66814 * 12 9 7 14 14 C 1.46847 * 111.00050 * 169.60271 * 13 12 9 15 15 C 1.53055 * 109.51595 * 185.87199 * 14 13 12 16 16 C 1.53025 * 109.26451 * 300.93932 * 15 14 13 17 17 C 1.53035 * 109.31894 * 57.56483 * 16 15 14 18 18 C 1.46846 * 110.99872 * 293.87484 * 13 12 9 19 19 C 1.53033 * 109.58402 * 177.63700 * 16 15 14 20 20 O 1.43102 * 109.15414 * 175.18407 * 19 16 15 21 21 C 1.43071 * 113.58698 * 302.20133 * 20 19 16 22 22 C 1.53144 * 109.18058 * 57.97849 * 21 20 19 23 23 O 1.42979 * 109.51684 * 297.57816 * 16 15 14 24 24 H 0.96999 * 120.00222 * 359.97438 * 1 2 3 25 25 H 0.96696 * 113.99602 * 59.99900 * 11 9 7 26 26 H 1.08996 * 109.47004 * 300.66205 * 12 9 7 27 27 H 1.08994 * 109.47091 * 60.66678 * 12 9 7 28 28 H 1.09005 * 109.45772 * 305.88469 * 14 13 12 29 29 H 1.08995 * 109.46424 * 65.85429 * 14 13 12 30 30 H 1.09000 * 109.50664 * 180.99797 * 15 14 13 31 31 H 1.09008 * 109.54355 * 60.89599 * 15 14 13 32 32 H 1.09001 * 109.50251 * 182.49078 * 17 16 15 33 33 H 1.08999 * 109.50470 * 62.36549 * 17 16 15 34 34 H 1.09000 * 109.46214 * 294.13223 * 18 13 12 35 35 H 1.08999 * 109.46382 * 54.12063 * 18 13 12 36 36 H 1.08998 * 109.52426 * 295.09195 * 19 16 15 37 37 H 1.09000 * 109.52236 * 55.28286 * 19 16 15 38 38 H 1.09000 * 109.52270 * 298.06655 * 21 20 19 39 39 H 1.09004 * 109.56598 * 177.91729 * 21 20 19 40 40 H 1.08998 * 109.52560 * 184.74259 * 22 21 20 41 41 H 1.08997 * 109.52926 * 64.52634 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6247 -2.5571 0.8897 11 8 0.4290 -2.5746 -1.1670 12 6 2.2453 -3.6621 -0.0005 13 7 1.5109 -4.9342 -0.0167 14 6 2.4177 -6.0623 -0.2646 15 6 1.6030 -7.3486 -0.4201 16 6 0.7915 -7.5894 0.8547 17 6 -0.1085 -6.3800 1.1180 18 6 0.7562 -5.1219 1.2289 19 6 -0.0710 -8.8421 0.6848 20 8 -0.7395 -9.1228 1.9185 21 6 0.1510 -9.3088 3.0227 22 6 1.0110 -8.0531 3.1927 23 8 1.6805 -7.7728 1.9594 24 1 -0.4850 0.8400 0.0004 25 1 0.9208 -2.5290 -1.9983 26 1 2.8797 -3.5976 -0.8845 27 1 2.8641 -3.6111 0.8953 28 1 2.9845 -5.8787 -1.1775 29 1 3.1051 -6.1669 0.5747 30 1 2.2773 -8.1887 -0.5865 31 1 0.9264 -7.2513 -1.2693 32 1 -0.6552 -6.5291 2.0491 33 1 -0.8141 -6.2653 0.2952 34 1 1.4510 -5.2309 2.0616 35 1 0.1168 -4.2559 1.4002 36 1 -0.8091 -8.6726 -0.0992 37 1 0.5626 -9.6865 0.4135 38 1 0.7944 -10.1676 2.8312 39 1 -0.4255 -9.4812 3.9316 40 1 1.7485 -8.2201 3.9777 41 1 0.3752 -7.2097 3.4620 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333256240.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:16 Heat of formation + Delta-G solvation = -134.635873 kcal Electronic energy + Delta-G solvation = -22399.927910 eV Core-core repulsion = 19086.929929 eV Total energy + Delta-G solvation = -3312.997981 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.68020 -37.92412 -36.09822 -35.13627 -32.92696 -32.02954 -30.68943 -29.74278 -28.21227 -26.53083 -24.46229 -23.54548 -23.00408 -21.16426 -20.06071 -19.28078 -17.10363 -16.84400 -16.45148 -15.90195 -15.58175 -15.08015 -14.73624 -14.62591 -14.52425 -14.13211 -13.60286 -13.44880 -13.40079 -12.68038 -12.53392 -12.31709 -12.01089 -11.97288 -11.75843 -11.13700 -10.98712 -10.94932 -10.87348 -10.79485 -10.68052 -10.52624 -10.41357 -9.97712 -9.83616 -9.13317 -8.87119 -8.53089 -8.04316 -7.54135 -5.97545 -4.15610 3.28173 3.36400 3.39733 3.60086 3.61207 4.35877 4.44011 4.55755 4.76927 4.78261 4.85546 4.95196 5.07796 5.29707 5.31500 5.38474 5.44740 5.57202 5.57600 5.66938 5.72767 5.83524 5.90881 6.00615 6.08804 6.18811 6.29260 6.31105 6.46141 6.49898 6.65564 6.85127 6.87562 7.10459 7.62769 7.71331 7.83152 7.93539 8.24687 8.88844 9.50297 9.66961 11.06618 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.037994 B = 0.004189 C = 0.004137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.774929 B = 6681.984622 C = 6766.521872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.080 3.920 3 Si 0.888 3.112 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.574 4.574 8 H 0.054 0.946 9 C 0.237 3.763 10 H 0.053 0.947 11 O -0.554 6.554 12 C 0.032 3.968 13 N -0.526 5.526 14 C 0.058 3.942 15 C -0.097 4.097 16 C 0.083 3.917 17 C -0.131 4.131 18 C 0.062 3.938 19 C 0.039 3.961 20 O -0.377 6.377 21 C 0.025 3.975 22 C 0.021 3.979 23 O -0.367 6.367 24 H 0.259 0.741 25 H 0.342 0.658 26 H 0.062 0.938 27 H 0.024 0.976 28 H 0.070 0.930 29 H 0.033 0.967 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.027 0.973 35 H 0.084 0.916 36 H 0.105 0.895 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.101 0.899 40 H 0.100 0.900 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.738 -18.071 3.320 18.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.126 4.126 3 Si 0.715 3.285 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.612 4.612 8 H 0.073 0.927 9 C 0.179 3.821 10 H 0.071 0.929 11 O -0.355 6.355 12 C -0.095 4.095 13 N -0.251 5.251 14 C -0.070 4.070 15 C -0.135 4.135 16 C 0.044 3.956 17 C -0.169 4.169 18 C -0.066 4.066 19 C -0.038 4.038 20 O -0.296 6.296 21 C -0.052 4.052 22 C -0.056 4.056 23 O -0.286 6.286 24 H 0.069 0.931 25 H 0.185 0.815 26 H 0.081 0.919 27 H 0.043 0.957 28 H 0.088 0.912 29 H 0.051 0.949 30 H 0.087 0.913 31 H 0.105 0.895 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.045 0.955 35 H 0.102 0.898 36 H 0.123 0.877 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.119 0.881 40 H 0.118 0.882 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.758 -17.993 3.399 18.327 hybrid contribution 1.641 0.960 0.458 1.955 sum 2.398 -17.034 3.857 17.629 Atomic orbital electron populations 1.70093 1.05901 1.26229 1.47244 1.25018 0.94663 0.99035 0.93891 0.86639 0.80221 0.83963 0.77673 1.19760 1.20861 1.20935 1.21715 0.93185 0.91686 1.54618 0.92726 1.19313 0.87782 0.88542 0.86445 0.92935 1.86554 1.37690 1.96314 1.14958 1.23044 0.97237 0.89848 0.99404 1.61954 1.26703 1.01809 1.34588 1.21961 0.94140 0.90567 1.00370 1.21522 0.99116 0.97925 0.94898 1.22165 0.90871 0.94461 0.88145 1.22050 0.98143 0.93866 1.02853 1.21963 0.96595 0.97550 0.90473 1.23249 0.97156 0.96355 0.87039 1.88085 1.32663 1.91663 1.17196 1.23215 0.93775 0.97383 0.90808 1.23216 0.97446 0.97187 0.87770 1.88114 1.32545 1.91474 1.16493 0.93090 0.81504 0.91923 0.95729 0.91175 0.94924 0.91332 0.89504 0.91296 0.89910 0.95492 0.89754 0.87689 0.92485 0.92519 0.88087 0.88213 0.91731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.61 12.84 55.43 0.71 -24.89 16 2 C 0.08 2.25 5.40 -17.82 -0.10 2.16 16 3 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.57 -15.90 8.76 -34.44 -0.30 -16.20 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.24 6.07 2.70 -27.88 -0.08 6.00 16 10 H 0.05 1.48 6.47 -51.93 -0.34 1.15 16 11 O -0.55 -14.54 12.58 -35.23 -0.44 -14.99 16 12 C 0.03 0.68 4.57 -3.82 -0.02 0.66 16 13 N -0.53 -9.76 4.51 -234.65 -1.06 -10.81 16 14 C 0.06 0.90 5.33 -3.82 -0.02 0.88 16 15 C -0.10 -1.24 5.11 -26.69 -0.14 -1.38 16 16 C 0.08 1.09 0.69 -90.57 -0.06 1.02 16 17 C -0.13 -1.96 4.51 -26.68 -0.12 -2.08 16 18 C 0.06 1.12 5.16 -3.83 -0.02 1.10 16 19 C 0.04 0.44 5.73 37.17 0.21 0.65 16 20 O -0.38 -4.61 10.41 -48.75 -0.51 -5.12 16 21 C 0.03 0.25 7.05 37.23 0.26 0.51 16 22 C 0.02 0.23 6.65 37.23 0.25 0.47 16 23 O -0.37 -5.01 9.16 -48.75 -0.45 -5.46 16 24 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 25 H 0.34 8.10 9.04 45.56 0.41 8.51 16 26 H 0.06 1.29 7.98 -51.93 -0.41 0.87 16 27 H 0.02 0.53 8.12 -51.93 -0.42 0.11 16 28 H 0.07 1.03 8.01 -51.93 -0.42 0.61 16 29 H 0.03 0.53 7.76 -51.93 -0.40 0.13 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.09 1.08 8.14 -51.92 -0.42 0.65 16 32 H 0.07 0.99 6.22 -51.93 -0.32 0.67 16 33 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 34 H 0.03 0.49 7.76 -51.93 -0.40 0.09 16 35 H 0.08 1.72 6.24 -51.93 -0.32 1.40 16 36 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.06 0.75 6.49 -51.93 -0.34 0.41 16 LS Contribution 317.29 15.07 4.78 4.78 Total: -1.00 -31.58 317.29 -8.00 -39.58 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -5.89 Total: 6.86 kcal Atomic # 6 Polarization: -6.08 SS G_CDS: -0.13 Total: -6.20 kcal Atomic # 7 Polarization: -35.36 SS G_CDS: -0.35 Total: -35.71 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: -1.40 Total: -25.57 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.58 -8.00 -39.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333256240.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.058 kcal (2) G-P(sol) polarization free energy of solvation -31.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds