Wall clock time and date at job start Mon Mar 30 2020 00:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86806 * 120.00311 * 2 1 4 4 H 1.48498 * 109.47232 * 269.99963 * 3 2 1 5 5 H 1.48499 * 109.47073 * 30.00266 * 3 2 1 6 6 H 1.48502 * 109.47082 * 149.99873 * 3 2 1 7 7 C 1.37878 * 120.00164 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00365 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99484 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.47113 * 299.99200 * 9 7 2 11 11 O 1.42897 * 109.47503 * 59.99654 * 9 7 2 12 12 C 1.53000 * 109.46905 * 179.97438 * 9 7 2 13 13 N 1.46907 * 109.47293 * 179.97438 * 12 9 7 14 14 C 1.46902 * 111.00033 * 179.97438 * 13 12 9 15 15 H 1.08996 * 110.45402 * 315.21447 * 14 13 12 16 16 C 1.54879 * 110.50694 * 77.96307 * 14 13 12 17 17 C 1.55020 * 102.09738 * 139.50822 * 16 14 13 18 18 O 1.44449 * 103.53949 * 323.14184 * 17 16 14 19 19 C 1.43457 * 106.90914 * 39.76145 * 18 17 16 20 20 C 1.52877 * 109.91510 * 93.21107 * 19 18 17 21 21 C 1.53154 * 109.16278 * 64.87923 * 20 19 18 22 22 O 1.42900 * 109.37370 * 57.05477 * 21 20 19 23 23 C 1.42911 * 114.18706 * 298.55774 * 22 21 20 24 24 C 1.52874 * 109.92011 * 214.22783 * 19 18 17 25 25 H 0.97003 * 119.99510 * 359.97438 * 1 2 3 26 26 H 0.96698 * 113.99664 * 60.00569 * 11 9 7 27 27 H 1.09002 * 109.47328 * 299.99372 * 12 9 7 28 28 H 1.08994 * 109.47579 * 59.99820 * 12 9 7 29 29 H 1.00895 * 110.99705 * 56.04375 * 13 12 9 30 30 H 1.08995 * 110.90334 * 257.70725 * 16 14 13 31 31 H 1.08997 * 110.90943 * 21.30895 * 16 14 13 32 32 H 1.09001 * 110.60757 * 204.62271 * 17 16 14 33 33 H 1.09001 * 110.60694 * 81.65437 * 17 16 14 34 34 H 1.09002 * 109.52157 * 184.78242 * 20 19 18 35 35 H 1.08996 * 109.52484 * 304.97098 * 20 19 18 36 36 H 1.09001 * 109.48859 * 297.09050 * 21 20 19 37 37 H 1.08999 * 109.50623 * 177.03373 * 21 20 19 38 38 H 1.08997 * 109.48548 * 301.47856 * 23 22 21 39 39 H 1.08999 * 109.50368 * 181.42407 * 23 22 21 40 40 H 1.08998 * 109.52462 * 55.03188 * 24 19 18 41 41 H 1.09000 * 109.51741 * 175.16073 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 1 0.6240 -2.5567 0.8904 11 8 0.4297 -2.5751 -1.1664 12 6 2.2451 -3.6620 0.0005 13 7 1.5106 -4.9343 0.0012 14 6 2.4351 -6.0759 0.0006 15 1 3.2376 -5.9159 -0.7195 16 6 3.0127 -6.3071 1.4189 17 6 2.9996 -7.8535 1.5269 18 8 1.7882 -8.2305 0.8365 19 6 1.6812 -7.3796 -0.3135 20 6 2.3128 -8.0621 -1.5269 21 6 1.5065 -9.3172 -1.8740 22 8 0.1444 -8.9554 -2.1100 23 6 -0.5088 -8.3669 -0.9834 24 6 0.2113 -7.0711 -0.5983 25 1 -0.4849 0.8401 0.0004 26 1 0.9222 -2.5300 -1.9974 27 1 2.8717 -3.6044 -0.8895 28 1 2.8718 -3.6044 0.8904 29 1 0.8739 -4.9846 -0.7799 30 1 4.0291 -5.9206 1.4926 31 1 2.3715 -5.8588 2.1778 32 1 2.9592 -8.1648 2.5707 33 1 3.8720 -8.2800 1.0318 34 1 2.3044 -7.3777 -2.3752 35 1 3.3401 -8.3420 -1.2938 36 1 1.5568 -10.0226 -1.0445 37 1 1.9205 -9.7794 -2.7701 38 1 -0.4815 -9.0613 -0.1437 39 1 -1.5450 -8.1450 -1.2384 40 1 -0.2516 -6.6483 0.2933 41 1 0.1414 -6.3568 -1.4187 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333937555.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:06 Heat of formation + Delta-G solvation = -139.125101 kcal Electronic energy + Delta-G solvation = -22261.041145 eV Core-core repulsion = 18947.848496 eV Total energy + Delta-G solvation = -3313.192648 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.70004 -37.89726 -36.49704 -34.40811 -32.40559 -32.13771 -31.27159 -30.50002 -28.00293 -26.12647 -24.19429 -23.50892 -23.25777 -20.81080 -20.25476 -19.50295 -16.97662 -16.73103 -16.21018 -15.94100 -15.69683 -15.38378 -14.86905 -14.60232 -14.38813 -14.32676 -13.81883 -13.43089 -13.11097 -12.82412 -12.46650 -12.30573 -11.82632 -11.77479 -11.62116 -11.30410 -11.23308 -11.06876 -10.94928 -10.88273 -10.76572 -10.61037 -10.22392 -10.08968 -9.62164 -9.44607 -9.04330 -8.60265 -8.22004 -7.88814 -6.02737 -4.21412 3.25648 3.32991 3.35277 3.79285 3.88547 4.29340 4.44861 4.55750 4.72276 4.79391 5.00090 5.02297 5.17891 5.19192 5.24416 5.32572 5.37037 5.48543 5.58169 5.64578 5.67664 5.75593 5.81515 5.89817 5.97377 6.09125 6.14495 6.19605 6.26759 6.30137 6.40608 6.83859 6.93202 7.20384 7.45862 7.72952 7.79815 7.94313 8.19262 8.81906 9.34536 9.55642 11.01515 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.030212 B = 0.004396 C = 0.004080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.566769 B = 6367.394424 C = 6861.671441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.080 3.920 3 Si 0.889 3.111 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.574 4.574 8 H 0.054 0.946 9 C 0.232 3.768 10 H 0.064 0.936 11 O -0.565 6.565 12 C 0.035 3.965 13 N -0.675 5.675 14 C 0.063 3.937 15 H 0.048 0.952 16 C -0.146 4.146 17 C 0.047 3.953 18 O -0.363 6.363 19 C 0.108 3.892 20 C -0.167 4.167 21 C 0.068 3.932 22 O -0.387 6.387 23 C 0.063 3.937 24 C -0.141 4.141 25 H 0.261 0.739 26 H 0.341 0.659 27 H 0.016 0.984 28 H 0.064 0.936 29 H 0.348 0.652 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.054 0.946 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.054 0.946 37 H 0.089 0.911 38 H 0.055 0.945 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.028 -17.063 -0.965 17.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.126 4.126 3 Si 0.716 3.284 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.613 4.613 8 H 0.072 0.928 9 C 0.175 3.825 10 H 0.082 0.918 11 O -0.367 6.367 12 C -0.094 4.094 13 N -0.311 5.311 14 C -0.048 4.048 15 H 0.066 0.934 16 C -0.184 4.184 17 C -0.030 4.030 18 O -0.282 6.282 19 C 0.068 3.932 20 C -0.206 4.206 21 C -0.009 4.009 22 O -0.305 6.305 23 C -0.014 4.014 24 C -0.179 4.179 25 H 0.070 0.930 26 H 0.184 0.816 27 H 0.034 0.966 28 H 0.083 0.917 29 H 0.170 0.830 30 H 0.092 0.908 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.073 0.927 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.073 0.927 37 H 0.107 0.893 38 H 0.073 0.927 39 H 0.112 0.888 40 H 0.115 0.885 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.034 -17.191 0.060 17.658 hybrid contribution 1.864 1.388 -1.007 2.533 sum 5.898 -15.803 -0.947 16.894 Atomic orbital electron populations 1.70080 1.05918 1.26446 1.46832 1.25026 0.94685 0.99098 0.93798 0.86674 0.79965 0.83546 0.78177 1.20565 1.21055 1.19870 1.21615 0.93092 0.91562 1.54995 0.92772 1.19416 0.88111 0.88820 0.86171 0.91838 1.86592 1.38546 1.96232 1.15323 1.22895 0.97437 0.89931 0.99146 1.60812 1.18685 1.00900 1.50698 1.22808 0.94241 0.91329 0.96427 0.93414 1.23219 1.01619 0.95614 0.97924 1.23514 0.87648 0.94300 0.97517 1.88841 1.42383 1.58143 1.38833 1.21883 0.96215 0.89115 0.85940 1.22634 1.00091 0.99292 0.98544 1.22450 0.82120 0.95233 1.01110 1.87887 1.24474 1.80800 1.37386 1.22617 0.96307 0.93662 0.88811 1.22200 0.93748 0.98205 1.03719 0.92956 0.81627 0.96562 0.91721 0.82951 0.90822 0.89054 0.89069 0.92738 0.90280 0.90827 0.92735 0.89313 0.92690 0.88822 0.88487 0.89805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.26 12.84 55.43 0.71 -24.54 16 2 C 0.08 2.24 5.40 -17.82 -0.10 2.14 16 3 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 6 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.57 -15.60 8.76 -34.44 -0.30 -15.90 16 8 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 9 C 0.23 5.79 3.10 -27.88 -0.09 5.70 16 10 H 0.06 1.79 8.14 -51.93 -0.42 1.36 16 11 O -0.56 -14.08 12.07 -35.23 -0.43 -14.51 16 12 C 0.03 0.70 5.17 -3.82 -0.02 0.68 16 13 N -0.68 -11.66 5.47 -105.22 -0.58 -12.24 16 14 C 0.06 0.90 2.95 -66.29 -0.20 0.71 16 15 H 0.05 0.68 7.56 -51.93 -0.39 0.29 16 16 C -0.15 -1.90 6.38 -24.67 -0.16 -2.06 16 17 C 0.05 0.53 7.66 38.22 0.29 0.82 16 18 O -0.36 -4.88 10.03 -35.23 -0.35 -5.23 16 19 C 0.11 1.42 0.72 -90.32 -0.06 1.36 16 20 C -0.17 -1.92 4.87 -26.71 -0.13 -2.05 16 21 C 0.07 0.76 6.72 37.24 0.25 1.01 16 22 O -0.39 -5.15 10.75 -35.23 -0.38 -5.53 16 23 C 0.06 0.78 6.72 37.24 0.25 1.03 16 24 C -0.14 -1.91 3.96 -26.71 -0.11 -2.02 16 25 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 26 H 0.34 7.55 9.04 45.56 0.41 7.96 16 27 H 0.02 0.32 8.11 -51.93 -0.42 -0.10 16 28 H 0.06 1.30 7.79 -51.93 -0.40 0.89 16 29 H 0.35 6.06 5.42 -39.29 -0.21 5.85 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.09 1.35 8.07 -51.93 -0.42 0.93 16 32 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.05 0.53 8.09 -51.93 -0.42 0.11 16 34 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.07 0.75 8.07 -51.93 -0.42 0.33 16 36 H 0.05 0.61 7.90 -51.93 -0.41 0.20 16 37 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.05 0.68 7.90 -51.93 -0.41 0.27 16 39 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.10 1.44 7.88 -51.93 -0.41 1.03 16 41 H 0.08 1.18 6.56 -51.93 -0.34 0.84 16 LS Contribution 321.70 15.07 4.85 4.85 Total: -1.00 -30.31 321.70 -7.48 -37.79 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: -5.93 Total: 12.01 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: -0.36 Total: -8.59 kcal Atomic # 7 Polarization: -36.92 SS G_CDS: 0.14 Total: -36.78 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: -1.16 Total: -25.27 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.31 -7.48 -37.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333937555.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.333 kcal (2) G-P(sol) polarization free energy of solvation -30.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds