Wall clock time and date at job start Mon Mar 30 2020 00:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 119.99551 * 2 1 4 4 H 1.48501 * 109.47483 * 269.99824 * 3 2 1 5 5 H 1.48502 * 109.47495 * 30.00338 * 3 2 1 6 6 H 1.48502 * 109.47376 * 149.99955 * 3 2 1 7 7 C 1.37871 * 120.00506 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00092 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00445 * 180.02562 * 7 2 1 10 10 C 1.52990 * 109.47398 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47398 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99488 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00290 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99828 * 180.27728 * 13 11 10 15 15 C 1.52996 * 109.47059 * 179.72339 * 14 13 11 16 16 C 1.52996 * 109.54755 * 59.81826 * 15 14 13 17 17 O 1.42901 * 109.47112 * 300.00732 * 16 15 14 18 18 C 1.53178 * 109.54326 * 299.55298 * 15 14 13 19 19 C 1.53097 * 109.16561 * 297.11361 * 18 15 14 20 20 O 1.42907 * 109.41255 * 302.39439 * 19 18 15 21 21 C 1.42893 * 114.09907 * 61.15484 * 20 19 18 22 22 C 1.53095 * 109.41906 * 298.83904 * 21 20 19 23 23 H 0.97000 * 120.00920 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.46954 * 59.99756 * 9 7 2 25 25 H 1.09011 * 109.46800 * 300.00341 * 9 7 2 26 26 H 1.08998 * 109.47508 * 59.99800 * 10 9 7 27 27 H 1.09002 * 109.47337 * 300.00085 * 10 9 7 28 28 H 0.97001 * 119.99727 * 359.97438 * 13 11 10 29 29 H 1.09004 * 109.46963 * 299.72135 * 14 13 11 30 30 H 1.08994 * 109.47567 * 59.72287 * 14 13 11 31 31 H 1.09006 * 109.47001 * 59.99992 * 16 15 14 32 32 H 1.08998 * 109.47640 * 180.02562 * 16 15 14 33 33 H 0.96700 * 114.00214 * 180.02562 * 17 16 15 34 34 H 1.09003 * 109.52546 * 57.01774 * 18 15 14 35 35 H 1.09003 * 109.52555 * 177.20892 * 18 15 14 36 36 H 1.09000 * 109.48306 * 182.40594 * 19 18 15 37 37 H 1.09001 * 109.48891 * 62.37475 * 19 18 15 38 38 H 1.09000 * 109.47975 * 178.85861 * 21 20 19 39 39 H 1.09002 * 109.49358 * 58.83134 * 21 20 19 40 40 H 1.09006 * 109.52331 * 297.71137 * 22 21 20 41 41 H 1.08998 * 109.52792 * 177.51573 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4404 0.7000 7 6 2.0045 -1.1939 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5116 -1.1939 0.0000 10 6 4.0216 -2.6363 -0.0014 11 6 5.5287 -2.6363 -0.0001 12 8 6.1350 -1.5859 0.0012 13 7 6.2026 -3.8034 -0.0016 14 6 7.6676 -3.8033 0.0057 15 6 8.1776 -5.2457 0.0093 16 6 7.6712 -5.9709 -1.2391 17 8 6.2422 -5.9718 -1.2426 18 6 7.6709 -5.9653 1.2630 19 6 8.2466 -5.2783 2.5041 20 8 9.6739 -5.2872 2.4330 21 6 10.2063 -4.5882 1.3061 22 6 9.7094 -5.2476 0.0169 23 1 -0.4851 0.8400 0.0004 24 1 3.8745 -0.6806 0.8905 25 1 3.8752 -0.6794 -0.8895 26 1 3.6587 -3.1492 -0.8920 27 1 3.6580 -3.1512 0.8879 28 1 5.7176 -4.6435 -0.0031 29 1 8.0353 -3.2901 -0.8828 30 1 8.0265 -3.2889 0.8971 31 1 8.0363 -5.4593 -2.1297 32 1 8.0348 -6.9984 -1.2352 33 1 5.8510 -6.4163 -2.0071 34 1 6.5823 -5.9205 1.2939 35 1 7.9930 -7.0065 1.2407 36 1 7.9238 -5.8122 3.3979 37 1 7.8914 -4.2487 2.5475 38 1 11.2953 -4.6251 1.3369 39 1 9.8768 -3.5496 1.3335 40 1 10.0727 -6.2743 -0.0306 41 1 10.0786 -4.6895 -0.8435 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001343727917.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:37 Heat of formation + Delta-G solvation = -146.196734 kcal Electronic energy + Delta-G solvation = -21810.749942 eV Core-core repulsion = 18497.250645 eV Total energy + Delta-G solvation = -3313.499297 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.67667 -38.78135 -37.34995 -35.03463 -33.40216 -33.09118 -31.39898 -31.16883 -27.91790 -26.97402 -25.06740 -23.96438 -22.91115 -21.13595 -19.74531 -18.96098 -17.67626 -17.06402 -16.54696 -16.22696 -15.86934 -15.70974 -15.51296 -14.94910 -14.65764 -14.44205 -14.03518 -13.57508 -13.38447 -13.30096 -12.79753 -12.62509 -12.48785 -12.30964 -11.75436 -11.62343 -11.35469 -11.22293 -10.96107 -10.89354 -10.55795 -10.24494 -10.08281 -9.97213 -9.73162 -9.69716 -9.14882 -9.06087 -8.61586 -8.46154 -5.99008 -3.97170 3.28305 3.40906 3.46062 3.47502 3.59170 3.64063 3.86493 4.26596 4.44619 4.54884 4.61324 4.71199 4.80383 4.96066 4.99772 5.09056 5.24138 5.31446 5.36688 5.38566 5.42096 5.50908 5.56622 5.60395 5.80827 5.82188 5.86526 5.99743 6.19900 6.21322 6.77922 6.89928 6.93767 7.32083 7.43727 7.50922 7.83862 8.11108 8.56156 8.85207 9.04966 9.64509 11.13941 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.029360 B = 0.004026 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.436891 B = 6953.787173 C = 7295.683631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.069 3.931 3 Si 0.877 3.123 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.261 1.261 7 C -0.523 4.523 8 H 0.072 0.928 9 C 0.002 3.998 10 C -0.120 4.120 11 C 0.506 3.494 12 O -0.551 6.551 13 N -0.726 5.726 14 C 0.129 3.871 15 C -0.073 4.073 16 C 0.090 3.910 17 O -0.568 6.568 18 C -0.139 4.139 19 C 0.055 3.945 20 O -0.383 6.383 21 C 0.057 3.943 22 C -0.141 4.141 23 H 0.263 0.737 24 H 0.022 0.978 25 H 0.018 0.982 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.410 0.590 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.049 0.951 32 H 0.048 0.952 33 H 0.384 0.616 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.095 0.905 37 H 0.057 0.943 38 H 0.096 0.904 39 H 0.057 0.943 40 H 0.078 0.922 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.250 -16.408 -0.805 26.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.132 4.132 3 Si 0.704 3.296 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.185 1.185 7 C -0.561 4.561 8 H 0.090 0.910 9 C -0.036 4.036 10 C -0.160 4.160 11 C 0.294 3.706 12 O -0.429 6.429 13 N -0.386 5.386 14 C 0.005 3.995 15 C -0.073 4.073 16 C 0.012 3.988 17 O -0.375 6.375 18 C -0.177 4.177 19 C -0.021 4.021 20 O -0.302 6.302 21 C -0.019 4.019 22 C -0.179 4.179 23 H 0.072 0.928 24 H 0.041 0.959 25 H 0.036 0.964 26 H 0.102 0.898 27 H 0.101 0.899 28 H 0.251 0.749 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.233 0.767 34 H 0.103 0.897 35 H 0.090 0.910 36 H 0.113 0.887 37 H 0.075 0.925 38 H 0.114 0.886 39 H 0.075 0.925 40 H 0.096 0.904 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 20.724 -15.324 -0.116 25.774 hybrid contribution -0.090 0.268 -0.904 0.947 sum 20.634 -15.056 -1.020 25.563 Atomic orbital electron populations 1.69911 1.06286 1.26904 1.51321 1.24965 0.94692 0.99198 0.94394 0.86797 0.80640 0.83413 0.78708 1.20288 1.21480 1.18540 1.21141 0.89380 0.94526 1.51047 0.90962 1.19358 0.96275 0.90433 0.97544 1.21612 0.88339 1.02902 1.03140 1.21511 0.91568 0.82958 0.74564 1.90630 1.70905 1.31802 1.49554 1.46380 1.05867 1.09902 1.76442 1.21262 0.82400 0.94107 1.01762 1.20934 0.95359 0.95646 0.95405 1.22167 0.81269 0.98606 0.96726 1.86170 1.19526 1.81469 1.50295 1.22159 1.02089 0.99711 0.93742 1.22680 0.80689 1.00683 0.98098 1.87923 1.20633 1.75933 1.45668 1.22612 0.98969 0.95404 0.84957 1.22141 0.93518 1.02796 0.99494 0.92777 0.95915 0.96388 0.89796 0.89903 0.74874 0.92133 0.91858 0.93291 0.93380 0.76745 0.89743 0.90969 0.88673 0.92500 0.88623 0.92513 0.90362 0.90275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.45 13.96 55.43 0.77 -27.67 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 3 Si 0.88 23.03 27.47 -169.99 -4.67 18.36 16 4 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 5 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 6 H -0.26 -6.86 6.54 56.52 0.37 -6.49 16 7 C -0.52 -15.31 9.66 -34.44 -0.33 -15.64 16 8 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 9 C 0.00 0.05 3.33 -27.89 -0.09 -0.05 16 10 C -0.12 -2.45 5.64 -27.89 -0.16 -2.61 16 11 C 0.51 9.76 7.83 -10.98 -0.09 9.67 16 12 O -0.55 -12.78 15.98 5.55 0.09 -12.69 16 13 N -0.73 -10.50 4.60 -60.30 -0.28 -10.78 16 14 C 0.13 1.61 4.01 -4.04 -0.02 1.59 16 15 C -0.07 -0.65 0.51 -154.33 -0.08 -0.72 16 16 C 0.09 0.68 5.93 37.16 0.22 0.90 16 17 O -0.57 -4.62 9.77 -35.23 -0.34 -4.97 16 18 C -0.14 -1.26 4.61 -26.59 -0.12 -1.38 16 19 C 0.06 0.55 6.57 37.21 0.24 0.79 16 20 O -0.38 -4.07 10.77 -35.23 -0.38 -4.45 16 21 C 0.06 0.49 6.57 37.21 0.24 0.73 16 22 C -0.14 -1.04 4.92 -26.59 -0.13 -1.17 16 23 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 24 H 0.02 0.61 7.16 -51.93 -0.37 0.24 16 25 H 0.02 0.48 7.53 -51.92 -0.39 0.09 16 26 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 27 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 28 H 0.41 5.24 4.70 -40.82 -0.19 5.05 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.85 5.01 -51.93 -0.26 0.59 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.38 1.70 9.12 45.56 0.42 2.11 16 34 H 0.08 0.82 6.55 -51.93 -0.34 0.48 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.06 0.64 6.60 -51.93 -0.34 0.30 16 38 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.52 6.61 -51.93 -0.34 0.18 16 40 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 319.33 15.07 4.81 4.81 Total: -1.00 -35.80 319.33 -6.04 -41.84 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -5.64 Total: 1.46 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: -0.41 Total: -5.92 kcal Atomic # 7 Polarization: -38.95 SS G_CDS: 0.50 Total: -38.45 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: -0.63 Total: -22.11 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -4.67 Total: 18.36 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -35.80 -6.04 -41.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343727917.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.353 kcal (2) G-P(sol) polarization free energy of solvation -35.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds