Wall clock time and date at job start Mon Mar 30 2020 00:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 119.99551 * 2 1 4 4 H 1.48501 * 109.47483 * 269.99824 * 3 2 1 5 5 H 1.48502 * 109.47495 * 30.00338 * 3 2 1 6 6 H 1.48502 * 109.47376 * 149.99955 * 3 2 1 7 7 C 1.37871 * 120.00506 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00092 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00445 * 180.02562 * 7 2 1 10 10 C 1.52990 * 109.47398 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47398 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99488 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00290 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99828 * 180.27728 * 13 11 10 15 15 C 1.52996 * 109.47059 * 179.72339 * 14 13 11 16 16 C 1.52996 * 109.54755 * 59.81826 * 15 14 13 17 17 O 1.42901 * 109.47112 * 300.00732 * 16 15 14 18 18 C 1.53178 * 109.54326 * 299.55298 * 15 14 13 19 19 C 1.53097 * 109.16561 * 297.11361 * 18 15 14 20 20 O 1.42907 * 109.41255 * 302.39439 * 19 18 15 21 21 C 1.42893 * 114.09907 * 61.15484 * 20 19 18 22 22 C 1.53095 * 109.41906 * 298.83904 * 21 20 19 23 23 H 0.97000 * 120.00920 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.46954 * 59.99756 * 9 7 2 25 25 H 1.09011 * 109.46800 * 300.00341 * 9 7 2 26 26 H 1.08998 * 109.47508 * 59.99800 * 10 9 7 27 27 H 1.09002 * 109.47337 * 300.00085 * 10 9 7 28 28 H 0.97001 * 119.99727 * 359.97438 * 13 11 10 29 29 H 1.09004 * 109.46963 * 299.72135 * 14 13 11 30 30 H 1.08994 * 109.47567 * 59.72287 * 14 13 11 31 31 H 1.09006 * 109.47001 * 59.99992 * 16 15 14 32 32 H 1.08998 * 109.47640 * 180.02562 * 16 15 14 33 33 H 0.96700 * 114.00214 * 180.02562 * 17 16 15 34 34 H 1.09003 * 109.52546 * 57.01774 * 18 15 14 35 35 H 1.09003 * 109.52555 * 177.20892 * 18 15 14 36 36 H 1.09000 * 109.48306 * 182.40594 * 19 18 15 37 37 H 1.09001 * 109.48891 * 62.37475 * 19 18 15 38 38 H 1.09000 * 109.47975 * 178.85861 * 21 20 19 39 39 H 1.09002 * 109.49358 * 58.83134 * 21 20 19 40 40 H 1.09006 * 109.52331 * 297.71137 * 22 21 20 41 41 H 1.08998 * 109.52792 * 177.51573 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4404 0.7000 7 6 2.0045 -1.1939 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5116 -1.1939 0.0000 10 6 4.0216 -2.6363 -0.0014 11 6 5.5287 -2.6363 -0.0001 12 8 6.1350 -1.5859 0.0012 13 7 6.2026 -3.8034 -0.0016 14 6 7.6676 -3.8033 0.0057 15 6 8.1776 -5.2457 0.0093 16 6 7.6712 -5.9709 -1.2391 17 8 6.2422 -5.9718 -1.2426 18 6 7.6709 -5.9653 1.2630 19 6 8.2466 -5.2783 2.5041 20 8 9.6739 -5.2872 2.4330 21 6 10.2063 -4.5882 1.3061 22 6 9.7094 -5.2476 0.0169 23 1 -0.4851 0.8400 0.0004 24 1 3.8745 -0.6806 0.8905 25 1 3.8752 -0.6794 -0.8895 26 1 3.6587 -3.1492 -0.8920 27 1 3.6580 -3.1512 0.8879 28 1 5.7176 -4.6435 -0.0031 29 1 8.0353 -3.2901 -0.8828 30 1 8.0265 -3.2889 0.8971 31 1 8.0363 -5.4593 -2.1297 32 1 8.0348 -6.9984 -1.2352 33 1 5.8510 -6.4163 -2.0071 34 1 6.5823 -5.9205 1.2939 35 1 7.9930 -7.0065 1.2407 36 1 7.9238 -5.8122 3.3979 37 1 7.8914 -4.2487 2.5475 38 1 11.2953 -4.6251 1.3369 39 1 9.8768 -3.5496 1.3335 40 1 10.0727 -6.2743 -0.0306 41 1 10.0786 -4.6895 -0.8435 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001343727917.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:36 Heat of formation + Delta-G solvation = -174.433933 kcal Electronic energy + Delta-G solvation = -21811.974399 eV Core-core repulsion = 18497.250645 eV Total energy + Delta-G solvation = -3314.723754 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.54534 -40.16093 -38.07020 -35.93355 -35.50358 -34.24025 -33.23160 -32.08334 -28.97896 -28.20145 -26.54458 -24.68194 -23.59079 -23.02522 -21.18199 -19.93055 -19.14617 -18.27649 -17.56060 -17.14977 -16.92973 -16.83864 -16.66845 -16.21954 -16.00971 -15.54601 -15.39006 -14.82866 -14.59859 -14.42531 -14.15386 -13.95580 -13.61135 -13.37690 -13.24547 -12.91443 -12.65724 -12.28653 -12.10289 -11.97270 -11.94487 -11.77489 -11.64951 -11.40104 -11.24760 -10.84742 -10.78416 -10.67847 -10.44922 -9.89373 -8.31801 -6.34620 1.32433 1.34204 1.49951 1.74670 2.33248 2.34902 2.93106 3.03708 3.17251 3.53153 3.72127 3.89604 4.02497 4.08732 4.20669 4.23675 4.34332 4.44559 4.49084 4.53987 4.57524 4.64072 4.67369 4.74351 4.79712 4.86983 4.95408 5.02144 5.10768 5.16163 5.23103 5.33689 5.44564 5.59478 5.65667 6.21804 6.23830 6.71154 6.72120 6.99322 7.30776 7.44730 8.83965 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.029360 B = 0.004026 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.436891 B = 6953.787173 C = 7295.683631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.015 3.985 3 Si 0.938 3.062 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.529 4.529 8 H 0.050 0.950 9 C 0.007 3.993 10 C -0.115 4.115 11 C 0.507 3.493 12 O -0.596 6.596 13 N -0.701 5.701 14 C 0.127 3.873 15 C -0.068 4.068 16 C 0.091 3.909 17 O -0.588 6.588 18 C -0.134 4.134 19 C 0.053 3.947 20 O -0.397 6.397 21 C 0.050 3.950 22 C -0.135 4.135 23 H 0.268 0.732 24 H 0.008 0.992 25 H 0.007 0.993 26 H 0.100 0.900 27 H 0.097 0.903 28 H 0.420 0.580 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.071 0.929 33 H 0.401 0.599 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.104 0.896 37 H 0.036 0.964 38 H 0.115 0.885 39 H 0.042 0.958 40 H 0.096 0.904 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.949 -17.764 -1.424 28.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.183 4.183 3 Si 0.763 3.237 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.567 4.567 8 H 0.068 0.932 9 C -0.031 4.031 10 C -0.154 4.154 11 C 0.295 3.705 12 O -0.477 6.477 13 N -0.360 5.360 14 C 0.003 3.997 15 C -0.069 4.069 16 C 0.014 3.986 17 O -0.398 6.398 18 C -0.172 4.172 19 C -0.024 4.024 20 O -0.316 6.316 21 C -0.026 4.026 22 C -0.173 4.173 23 H 0.077 0.923 24 H 0.026 0.974 25 H 0.026 0.974 26 H 0.118 0.882 27 H 0.115 0.885 28 H 0.264 0.736 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.252 0.748 34 H 0.095 0.905 35 H 0.106 0.894 36 H 0.122 0.878 37 H 0.054 0.946 38 H 0.133 0.867 39 H 0.060 0.940 40 H 0.114 0.886 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 22.426 -16.745 -0.750 27.998 hybrid contribution -0.627 0.601 -0.698 1.114 sum 21.800 -16.143 -1.448 27.165 Atomic orbital electron populations 1.70016 1.07733 1.28116 1.52507 1.25781 0.95487 1.02777 0.94216 0.85833 0.79159 0.79548 0.79187 1.19259 1.20170 1.18855 1.21431 0.91191 0.93757 1.50360 0.93176 1.19203 0.93969 0.93749 0.96201 1.21447 0.89610 0.99729 1.04655 1.21209 0.91046 0.83589 0.74641 1.90613 1.71438 1.33537 1.52137 1.46198 1.07011 1.08835 1.73972 1.21419 0.80603 0.96844 1.00834 1.20947 0.96502 0.93074 0.96364 1.22188 0.81018 0.99695 0.95736 1.86068 1.20033 1.82023 1.51633 1.22116 1.01488 1.00380 0.93213 1.22699 0.80701 0.99743 0.99221 1.87903 1.20777 1.76138 1.46769 1.22785 1.00079 0.94640 0.85139 1.22125 0.92070 1.03925 0.99150 0.92333 0.97388 0.97412 0.88215 0.88515 0.73571 0.92775 0.93144 0.92903 0.91040 0.74753 0.90508 0.89435 0.87789 0.94586 0.86744 0.93964 0.88575 0.88964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.77 13.96 21.44 0.30 -59.47 16 2 C 0.02 0.91 5.47 84.65 0.46 1.38 16 3 Si 0.94 47.70 27.47 68.60 1.88 49.58 16 4 H -0.27 -13.11 7.11 99.48 0.71 -12.40 16 5 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 6 H -0.26 -13.47 6.54 99.48 0.65 -12.82 16 7 C -0.53 -31.32 9.66 25.60 0.25 -31.08 16 8 H 0.05 3.11 7.99 -2.91 -0.02 3.09 16 9 C 0.01 0.35 3.33 29.85 0.10 0.45 16 10 C -0.11 -4.62 5.64 29.85 0.17 -4.45 16 11 C 0.51 19.33 7.83 87.66 0.69 20.02 16 12 O -0.60 -27.77 15.98 -3.04 -0.05 -27.82 16 13 N -0.70 -19.49 4.60 -463.07 -2.13 -21.62 16 14 C 0.13 3.03 4.01 86.38 0.35 3.37 16 15 C -0.07 -1.05 0.51 -52.06 -0.03 -1.08 16 16 C 0.09 1.07 5.93 71.98 0.43 1.50 16 17 O -0.59 -7.94 9.77 -148.98 -1.46 -9.40 16 18 C -0.13 -2.14 4.61 30.69 0.14 -2.00 16 19 C 0.05 1.00 6.57 72.01 0.47 1.47 16 20 O -0.40 -7.91 10.77 -148.98 -1.60 -9.52 16 21 C 0.05 0.77 6.57 72.01 0.47 1.25 16 22 C -0.13 -1.61 4.92 30.69 0.15 -1.45 16 23 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 24 H 0.01 0.42 7.16 -2.39 -0.02 0.41 16 25 H 0.01 0.40 7.53 -2.38 -0.02 0.38 16 26 H 0.10 3.68 8.14 -2.39 -0.02 3.66 16 27 H 0.10 3.60 8.14 -2.39 -0.02 3.58 16 28 H 0.42 10.00 4.70 -92.71 -0.44 9.56 16 29 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 30 H 0.05 1.36 5.01 -2.39 -0.01 1.35 16 31 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 32 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.40 2.39 9.12 -74.06 -0.68 1.72 16 34 H 0.08 1.35 6.55 -2.39 -0.02 1.33 16 35 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.04 0.82 6.60 -2.39 -0.02 0.80 16 38 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.04 0.77 6.61 -2.39 -0.02 0.75 16 40 H 0.10 0.88 8.14 -2.38 -0.02 0.86 16 41 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -77.23 319.33 0.47 -76.77 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -0.13 Total: 12.10 kcal Atomic # 6 Polarization: -14.27 SS G_CDS: 3.65 Total: -10.63 kcal Atomic # 7 Polarization: -79.26 SS G_CDS: -1.83 Total: -81.09 kcal Atomic # 8 Polarization: -43.62 SS G_CDS: -3.11 Total: -46.73 kcal Atomic # 14 Polarization: 47.70 SS G_CDS: 1.88 Total: 49.58 kcal Total: -77.23 0.47 -76.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343727917.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.667 kcal (2) G-P(sol) polarization free energy of solvation -77.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds