Wall clock time and date at job start Mon Mar 30 2020 00:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99947 * 2 1 4 4 H 1.48504 * 109.47180 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46981 * 300.00444 * 3 2 1 6 6 H 1.48500 * 109.47183 * 60.00377 * 3 2 1 7 7 C 1.37883 * 120.00042 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99991 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99731 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.46654 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47156 * 179.97438 * 10 9 7 12 12 O 1.21288 * 119.99700 * 359.97438 * 11 10 9 13 13 N 1.34771 * 120.00338 * 179.97438 * 11 10 9 14 14 C 1.48146 * 127.83819 * 0.02956 * 13 11 10 15 15 C 1.54386 * 104.62177 * 140.41176 * 14 13 11 16 16 H 1.08999 * 110.43318 * 264.95184 * 15 14 13 17 17 C 1.52998 * 110.34271 * 142.73375 * 15 14 13 18 18 O 1.42904 * 109.47221 * 69.46721 * 17 15 14 19 19 C 1.54292 * 104.96012 * 23.86574 * 15 14 13 20 20 H 1.08997 * 110.34093 * 118.98043 * 19 15 14 21 21 C 1.52998 * 110.33960 * 241.13194 * 19 15 14 22 22 C 1.52999 * 109.46788 * 184.99993 * 21 19 15 23 23 O 1.42903 * 109.47256 * 180.02562 * 22 21 19 24 24 C 1.48149 * 127.83923 * 180.02562 * 13 11 10 25 25 H 0.96994 * 119.99981 * 359.97438 * 1 2 3 26 26 H 1.08991 * 109.47228 * 60.00278 * 9 7 2 27 27 H 1.09000 * 109.47075 * 299.99662 * 9 7 2 28 28 H 1.09000 * 109.47788 * 59.99621 * 10 9 7 29 29 H 1.09001 * 109.47353 * 299.99495 * 10 9 7 30 30 H 1.08999 * 110.40821 * 21.62407 * 14 13 11 31 31 H 1.09004 * 110.50536 * 259.24434 * 14 13 11 32 32 H 1.09004 * 109.46657 * 189.46094 * 17 15 14 33 33 H 1.08990 * 109.47667 * 309.46040 * 17 15 14 34 34 H 0.96695 * 113.99952 * 179.97438 * 18 17 15 35 35 H 1.08997 * 109.47384 * 64.99836 * 21 19 15 36 36 H 1.08997 * 109.47329 * 304.99579 * 21 19 15 37 37 H 1.08997 * 109.47286 * 59.99783 * 22 21 19 38 38 H 1.09008 * 109.47201 * 299.99563 * 22 21 19 39 39 H 0.96700 * 114.00311 * 180.02562 * 23 22 21 40 40 H 1.09007 * 110.40624 * 100.80255 * 24 13 11 41 41 H 1.08999 * 110.40769 * 338.37736 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4919 -4.9672 0.0001 12 8 0.2790 -4.9672 0.0010 13 7 2.1657 -6.1343 -0.0003 14 6 3.6333 -6.3364 -0.0008 15 6 3.8627 -7.5302 0.9509 16 1 4.0964 -7.1768 1.9552 17 6 4.9906 -8.4204 0.4253 18 8 6.2361 -7.7295 0.5416 19 6 2.5265 -8.3017 0.9513 20 1 2.6742 -9.3154 0.5789 21 6 1.9321 -8.3352 2.3607 22 6 0.6755 -9.2080 2.3635 23 8 0.1199 -9.2388 3.6798 24 6 1.6069 -7.5064 -0.0003 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8902 27 1 0.6248 -2.5571 0.8897 28 1 2.8721 -3.6044 0.8894 29 1 2.8719 -3.6044 -0.8906 30 1 4.1395 -5.4475 0.3757 31 1 3.9853 -6.5770 -1.0039 32 1 5.0294 -9.3401 1.0090 33 1 4.8053 -8.6618 -0.6212 34 1 6.9975 -8.2357 0.2267 35 1 1.6720 -7.3228 2.6695 36 1 2.6639 -8.7498 3.0539 37 1 0.9356 -10.2204 2.0547 38 1 -0.0565 -8.7934 1.6703 39 1 -0.6809 -9.7754 3.7563 40 1 1.6405 -7.9305 -1.0040 41 1 0.5841 -7.5002 0.3765 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001353369562.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:57 Heat of formation + Delta-G solvation = -183.665978 kcal Electronic energy + Delta-G solvation = -21234.946539 eV Core-core repulsion = 17919.822454 eV Total energy + Delta-G solvation = -3315.124086 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.29378 -39.40885 -37.86527 -37.09529 -35.61015 -34.26064 -32.92418 -31.89486 -29.10087 -27.56503 -26.50097 -25.17054 -23.39003 -22.05827 -20.91252 -20.17495 -18.90760 -18.45631 -17.90280 -17.57605 -17.27284 -16.58180 -16.42235 -16.30849 -15.83108 -15.39318 -15.06456 -14.53735 -14.35626 -14.16179 -14.04302 -13.78023 -13.46289 -13.22105 -12.94088 -12.84748 -12.69814 -12.46725 -12.26329 -12.00736 -11.94777 -11.76681 -11.69535 -11.48896 -11.31513 -10.86098 -10.85238 -10.68895 -10.60037 -9.74378 -8.20141 -6.34765 1.40706 1.42728 1.56238 1.62961 1.97818 2.41949 3.05568 3.12646 3.38857 3.42745 3.75190 3.91948 4.07440 4.09087 4.22190 4.30253 4.38551 4.41077 4.45413 4.47652 4.54163 4.59642 4.65982 4.75051 4.81671 4.92378 4.94295 4.99802 5.12255 5.14622 5.20395 5.44276 5.50006 5.57404 5.81270 6.14488 6.49376 6.83093 6.87553 7.04008 7.19887 7.35605 8.93030 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.018334 B = 0.004153 C = 0.003611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.889967 B = 6739.784372 C = 7752.977400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.006 4.006 3 Si 0.976 3.024 4 H -0.253 1.253 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.544 4.544 8 H 0.074 0.926 9 C 0.044 3.956 10 C -0.112 4.112 11 C 0.529 3.471 12 O -0.590 6.590 13 N -0.629 5.629 14 C 0.105 3.895 15 C -0.095 4.095 16 H 0.076 0.924 17 C 0.091 3.909 18 O -0.596 6.596 19 C -0.075 4.075 20 H 0.131 0.869 21 C -0.112 4.112 22 C 0.072 3.928 23 O -0.601 6.601 24 C 0.094 3.906 25 H 0.264 0.736 26 H -0.016 1.016 27 H -0.020 1.020 28 H 0.094 0.906 29 H 0.100 0.900 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.399 0.601 35 H 0.032 0.968 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.039 0.961 39 H 0.397 0.603 40 H 0.093 0.907 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.156 -25.303 0.598 28.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.203 4.203 3 Si 0.800 3.200 4 H -0.177 1.177 5 H -0.203 1.203 6 H -0.205 1.205 7 C -0.582 4.582 8 H 0.092 0.908 9 C 0.006 3.994 10 C -0.152 4.152 11 C 0.320 3.680 12 O -0.471 6.471 13 N -0.363 5.363 14 C -0.017 4.017 15 C -0.115 4.115 16 H 0.095 0.905 17 C 0.013 3.987 18 O -0.405 6.405 19 C -0.094 4.094 20 H 0.149 0.851 21 C -0.149 4.149 22 C -0.005 4.005 23 O -0.409 6.409 24 C -0.028 4.028 25 H 0.072 0.928 26 H 0.002 0.998 27 H -0.001 1.001 28 H 0.113 0.887 29 H 0.118 0.882 30 H 0.094 0.906 31 H 0.110 0.890 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.249 0.751 35 H 0.051 0.949 36 H 0.100 0.900 37 H 0.097 0.903 38 H 0.057 0.943 39 H 0.247 0.753 40 H 0.111 0.889 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 11.445 -24.259 0.954 26.840 hybrid contribution -0.551 0.456 -0.227 0.750 sum 10.894 -23.803 0.728 26.187 Atomic orbital electron populations 1.70188 1.08351 1.27837 1.51375 1.26156 0.95748 1.03992 0.94447 0.85237 0.79229 0.77860 0.77693 1.17674 1.20341 1.20501 1.21709 0.93918 0.91547 1.51006 0.90766 1.18685 0.93597 0.92414 0.94666 1.21576 0.99265 0.90213 1.04113 1.20971 0.87235 0.85533 0.74301 1.90644 1.16395 1.87789 1.52245 1.49127 1.09080 1.05124 1.72932 1.22638 0.78696 0.99447 1.00888 1.22127 0.94239 0.95145 0.99943 0.90508 1.22224 0.82418 0.93444 1.00589 1.86467 1.17931 1.47780 1.88285 1.21982 0.92732 1.00790 0.93898 0.85083 1.21543 0.97183 0.99203 0.96998 1.22325 0.94691 0.99917 0.83560 1.86435 1.47790 1.75651 1.31049 1.22682 0.98257 0.81046 1.00782 0.92764 0.99772 1.00117 0.88730 0.88180 0.90564 0.88954 0.91105 0.91349 0.75099 0.94861 0.89952 0.90303 0.94268 0.75321 0.88852 0.91962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.03 13.29 21.45 0.28 -60.74 16 2 C -0.01 -0.36 5.46 84.66 0.46 0.10 16 3 Si 0.98 45.53 29.54 68.60 2.03 47.55 16 4 H -0.25 -10.93 7.11 99.48 0.71 -10.23 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 6 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 7 C -0.54 -32.32 9.11 25.60 0.23 -32.08 16 8 H 0.07 4.05 7.74 -2.91 -0.02 4.03 16 9 C 0.04 2.60 4.26 29.85 0.13 2.72 16 10 C -0.11 -4.99 4.62 29.85 0.14 -4.85 16 11 C 0.53 22.81 7.91 87.66 0.69 23.50 16 12 O -0.59 -31.33 16.25 -3.05 -0.05 -31.38 16 13 N -0.63 -19.40 3.32 -807.93 -2.68 -22.08 16 14 C 0.11 2.36 6.36 86.53 0.55 2.91 16 15 C -0.10 -1.60 2.98 -9.89 -0.03 -1.63 16 16 H 0.08 1.56 7.71 -2.39 -0.02 1.54 16 17 C 0.09 0.93 6.15 71.98 0.44 1.37 16 18 O -0.60 -7.95 13.55 -148.98 -2.02 -9.97 16 19 C -0.08 -1.17 2.72 -9.88 -0.03 -1.19 16 20 H 0.13 1.00 7.71 -2.39 -0.02 0.98 16 21 C -0.11 -2.22 4.80 30.59 0.15 -2.08 16 22 C 0.07 1.27 6.90 71.98 0.50 1.77 16 23 O -0.60 -12.56 13.66 -148.98 -2.04 -14.59 16 24 C 0.09 2.19 6.44 86.54 0.56 2.75 16 25 H 0.26 15.95 8.31 -92.71 -0.77 15.18 16 26 H -0.02 -1.06 8.10 -2.39 -0.02 -1.08 16 27 H -0.02 -1.30 8.10 -2.39 -0.02 -1.32 16 28 H 0.09 3.87 7.95 -2.39 -0.02 3.85 16 29 H 0.10 3.98 8.14 -2.39 -0.02 3.96 16 30 H 0.08 1.88 7.30 -2.39 -0.02 1.87 16 31 H 0.09 1.71 7.75 -2.38 -0.02 1.69 16 32 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.07 0.47 7.98 -2.39 -0.02 0.45 16 34 H 0.40 1.58 9.12 -74.06 -0.68 0.91 16 35 H 0.03 0.94 8.13 -2.39 -0.02 0.92 16 36 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.04 0.76 6.66 -2.38 -0.02 0.75 16 39 H 0.40 4.46 9.12 -74.06 -0.68 3.78 16 40 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 41 H 0.06 1.75 6.14 -2.39 -0.01 1.74 16 Total: -1.00 -87.41 337.19 -1.00 -88.41 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -0.32 Total: 9.51 kcal Atomic # 6 Polarization: -10.50 SS G_CDS: 3.79 Total: -6.70 kcal Atomic # 7 Polarization: -80.43 SS G_CDS: -2.39 Total: -82.82 kcal Atomic # 8 Polarization: -51.84 SS G_CDS: -4.10 Total: -55.94 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.55 kcal Total: -87.41 -1.00 -88.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353369562.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.256 kcal (2) G-P(sol) polarization free energy of solvation -87.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds