Wall clock time and date at job start Mon Mar 30 2020 00:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99583 * 2 1 4 4 H 1.48508 * 109.46905 * 264.82015 * 3 2 1 5 5 H 1.48497 * 109.47628 * 24.81912 * 3 2 1 6 6 H 1.48496 * 109.47284 * 144.82124 * 3 2 1 7 7 C 1.37871 * 120.00137 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00371 * 3.77996 * 7 2 1 9 9 C 1.50706 * 119.99893 * 183.77866 * 7 2 1 10 10 O 1.42902 * 110.63836 * 61.95225 * 9 7 2 11 11 C 1.55156 * 110.71958 * 185.09293 * 9 7 2 12 12 C 1.54906 * 101.57942 * 153.86467 * 11 9 7 13 13 N 1.47428 * 104.83730 * 322.99230 * 12 11 9 14 14 C 1.34771 * 125.65313 * 204.09465 * 13 12 11 15 15 O 1.21282 * 120.00222 * 180.02562 * 14 13 12 16 16 C 1.50696 * 119.99943 * 0.02562 * 14 13 12 17 17 C 1.53000 * 109.47254 * 180.02562 * 16 14 13 18 18 C 1.52998 * 109.47186 * 180.02562 * 17 16 14 19 19 C 1.53001 * 109.47129 * 180.02562 * 18 17 16 20 20 C 1.52998 * 109.47129 * 180.02562 * 19 18 17 21 21 O 1.42898 * 109.47392 * 179.97438 * 20 19 18 22 22 C 1.47027 * 108.69725 * 24.35656 * 13 12 11 23 23 H 0.96996 * 120.00056 * 0.02562 * 1 2 3 24 24 H 0.96702 * 114.00214 * 61.69129 * 10 9 7 25 25 H 1.08996 * 111.00141 * 35.79244 * 11 9 7 26 26 H 1.09001 * 111.03606 * 271.95316 * 11 9 7 27 27 H 1.08996 * 110.37049 * 204.15284 * 12 11 9 28 28 H 1.09002 * 110.36914 * 81.82873 * 12 11 9 29 29 H 1.09002 * 109.46878 * 60.00309 * 16 14 13 30 30 H 1.08996 * 109.47469 * 300.00453 * 16 14 13 31 31 H 1.09002 * 109.47061 * 60.00255 * 17 16 14 32 32 H 1.08996 * 109.47117 * 300.00503 * 17 16 14 33 33 H 1.08993 * 109.47371 * 59.99716 * 18 17 16 34 34 H 1.09003 * 109.46938 * 299.99720 * 18 17 16 35 35 H 1.09002 * 109.47410 * 59.99633 * 19 18 17 36 36 H 1.09003 * 109.46662 * 299.99497 * 19 18 17 37 37 H 1.09002 * 109.47274 * 59.99550 * 20 19 18 38 38 H 1.09003 * 109.46938 * 299.99328 * 20 19 18 39 39 H 0.96695 * 114.00480 * 180.02562 * 21 20 19 40 40 H 1.08998 * 109.88265 * 118.13517 * 22 13 12 41 41 H 1.09003 * 109.87662 * 239.29739 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6060 1.9833 -1.3944 5 1 1.3961 2.6819 0.5877 6 1 3.4876 1.4744 0.8066 7 6 2.0046 -1.1940 0.0005 8 1 1.4664 -2.1283 -0.0607 9 6 3.5092 -1.1953 0.0865 10 8 3.9441 -0.6056 1.3134 11 6 4.0660 -2.6363 -0.0577 12 6 5.4848 -2.3668 -0.6180 13 7 5.3189 -1.2208 -1.5304 14 6 6.1273 -0.9170 -2.5652 15 8 5.8940 0.0549 -3.2521 16 6 7.3211 -1.7851 -2.8687 17 6 8.0649 -1.2235 -4.0821 18 6 9.2766 -2.1052 -4.3906 19 6 10.0206 -1.5431 -5.6036 20 6 11.2320 -2.4252 -5.9125 21 8 11.9266 -1.9007 -7.0458 22 6 4.1290 -0.4605 -1.1208 23 1 -0.4850 0.8400 -0.0004 24 1 3.6447 -1.0757 2.1037 25 1 3.4710 -3.2162 -0.7631 26 1 4.1164 -3.1350 0.9103 27 1 5.8486 -3.2370 -1.1643 28 1 6.1699 -2.1118 0.1906 29 1 6.9869 -2.7999 -3.0847 30 1 7.9892 -1.7982 -2.0076 31 1 8.3991 -0.2088 -3.8656 32 1 7.3970 -1.2100 -4.9433 33 1 8.9420 -3.1197 -4.6071 34 1 9.9446 -2.1189 -3.5293 35 1 10.3553 -0.5287 -5.3867 36 1 9.3528 -1.5291 -6.4649 37 1 10.8970 -3.4395 -6.1296 38 1 11.9000 -2.4397 -5.0512 39 1 12.7076 -2.4113 -7.2994 40 1 4.4161 0.5512 -0.8341 41 1 3.4109 -0.4261 -1.9401 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001452245721.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:09 Heat of formation + Delta-G solvation = -148.075968 kcal Electronic energy + Delta-G solvation = -21087.410635 eV Core-core repulsion = 17773.829848 eV Total energy + Delta-G solvation = -3313.580787 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.71764 -37.81913 -37.43123 -35.29399 -34.54999 -32.44808 -31.56692 -30.11033 -28.68813 -26.80624 -24.74709 -22.95196 -22.08373 -21.21571 -19.79280 -18.88936 -17.65121 -17.25382 -16.67189 -16.41090 -15.81555 -15.34750 -14.78678 -14.61769 -14.49392 -14.22510 -13.76779 -13.14421 -12.93588 -12.75280 -12.72666 -12.35949 -11.93925 -11.92641 -11.72655 -11.50109 -11.35059 -11.27115 -11.08891 -10.93872 -10.69288 -10.64576 -10.30647 -10.29970 -10.16245 -9.47480 -9.07901 -8.74975 -8.48769 -8.12701 -6.24069 -4.36737 2.99812 3.30020 3.40316 3.49944 3.62420 3.87621 4.41969 4.64262 4.66553 4.85377 4.88357 4.97825 5.06542 5.07295 5.17105 5.21410 5.31373 5.40700 5.48354 5.55564 5.63290 5.68154 5.69852 5.78935 5.95867 5.98904 6.07822 6.15232 6.28801 6.46335 6.52673 6.61731 6.74829 7.03165 7.27087 7.46524 7.99006 8.17108 8.55439 8.70554 8.87131 9.39222 10.85986 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.036982 B = 0.003473 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.942197 B = 8061.264930 C = 8438.124388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.090 3.910 3 Si 0.864 3.136 4 H -0.278 1.278 5 H -0.295 1.295 6 H -0.228 1.228 7 C -0.552 4.552 8 H 0.081 0.919 9 C 0.214 3.786 10 O -0.574 6.574 11 C -0.146 4.146 12 C 0.101 3.899 13 N -0.613 5.613 14 C 0.518 3.482 15 O -0.550 6.550 16 C -0.134 4.134 17 C -0.104 4.104 18 C -0.116 4.116 19 C -0.122 4.122 20 C 0.075 3.925 21 O -0.577 6.577 22 C 0.111 3.889 23 H 0.268 0.732 24 H 0.365 0.635 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.045 0.955 38 H 0.045 0.955 39 H 0.378 0.622 40 H 0.060 0.940 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.725 -8.538 -5.134 22.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.116 4.116 3 Si 0.691 3.309 4 H -0.205 1.205 5 H -0.222 1.222 6 H -0.151 1.151 7 C -0.589 4.589 8 H 0.099 0.901 9 C 0.174 3.826 10 O -0.380 6.380 11 C -0.184 4.184 12 C -0.022 4.022 13 N -0.346 5.346 14 C 0.307 3.693 15 O -0.429 6.429 16 C -0.174 4.174 17 C -0.142 4.142 18 C -0.154 4.154 19 C -0.159 4.159 20 C -0.003 4.003 21 O -0.382 6.382 22 C -0.010 4.010 23 H 0.077 0.923 24 H 0.212 0.788 25 H 0.098 0.902 26 H 0.094 0.906 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.225 0.775 40 H 0.078 0.922 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 19.283 -7.028 -5.937 21.365 hybrid contribution 0.382 -0.034 0.397 0.552 sum 19.665 -7.063 -5.539 21.616 Atomic orbital electron populations 1.69915 1.06607 1.27725 1.47807 1.24975 0.94632 0.99651 0.92314 0.87217 0.81819 0.82426 0.79435 1.20459 1.22234 1.15128 1.21195 0.88174 0.95123 1.54429 0.90134 1.19983 0.93504 0.87168 0.81903 1.86518 1.78556 1.57034 1.15901 1.23328 0.93968 0.99921 1.01212 1.22339 0.99148 0.88053 0.92619 1.48720 1.27867 1.28651 1.29385 1.20342 0.83716 0.85821 0.79436 1.90686 1.73558 1.29321 1.49301 1.21639 0.95619 0.99891 1.00242 1.21322 0.95958 0.99476 0.97406 1.21514 0.96952 0.99519 0.97370 1.21533 0.95818 0.99851 0.98747 1.22241 0.93826 0.96534 0.87696 1.86494 1.45108 1.56973 1.49639 1.22582 0.85520 0.95237 0.97704 0.92255 0.78763 0.90217 0.90563 0.91527 0.91630 0.89151 0.89252 0.91088 0.91007 0.91711 0.91763 0.91108 0.91077 0.93697 0.93720 0.77550 0.92223 0.89930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.37 13.96 55.43 0.77 -25.59 16 2 C 0.09 2.54 5.47 -17.82 -0.10 2.44 16 3 Si 0.86 22.07 23.99 -169.99 -4.08 17.99 16 4 H -0.28 -7.28 7.11 56.52 0.40 -6.88 16 5 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 6 H -0.23 -5.72 5.40 56.52 0.30 -5.41 16 7 C -0.55 -14.64 8.72 -34.44 -0.30 -14.94 16 8 H 0.08 2.28 8.03 -52.49 -0.42 1.86 16 9 C 0.21 4.75 0.68 -89.93 -0.06 4.69 16 10 O -0.57 -12.31 10.47 -35.23 -0.37 -12.68 16 11 C -0.15 -2.54 6.22 -24.58 -0.15 -2.69 16 12 C 0.10 1.54 6.68 -2.53 -0.02 1.52 16 13 N -0.61 -11.66 3.33 -170.51 -0.57 -12.23 16 14 C 0.52 9.44 7.85 -10.99 -0.09 9.35 16 15 O -0.55 -12.24 16.31 5.56 0.09 -12.14 16 16 C -0.13 -1.64 4.71 -27.88 -0.13 -1.77 16 17 C -0.10 -1.21 4.50 -26.73 -0.12 -1.33 16 18 C -0.12 -0.99 5.21 -26.73 -0.14 -1.13 16 19 C -0.12 -1.11 5.58 -26.73 -0.15 -1.26 16 20 C 0.07 0.57 7.05 37.16 0.26 0.83 16 21 O -0.58 -5.04 13.66 -35.23 -0.48 -5.52 16 22 C 0.11 2.56 4.39 -3.06 -0.01 2.55 16 23 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 24 H 0.37 6.56 9.10 45.56 0.41 6.97 16 25 H 0.08 1.42 8.04 -51.93 -0.42 1.00 16 26 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.07 0.79 7.48 -51.93 -0.39 0.40 16 28 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.09 0.93 7.85 -51.93 -0.41 0.52 16 30 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 32 H 0.07 0.93 8.10 -51.93 -0.42 0.50 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.38 1.46 9.12 45.56 0.42 1.88 16 40 H 0.06 1.48 5.70 -51.93 -0.30 1.18 16 41 H 0.08 2.07 7.62 -51.93 -0.40 1.68 16 LS Contribution 329.10 15.07 4.96 4.96 Total: -1.00 -34.45 329.10 -6.05 -40.50 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -5.37 Total: 6.44 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: -1.01 Total: -1.73 kcal Atomic # 7 Polarization: -38.03 SS G_CDS: 0.21 Total: -37.82 kcal Atomic # 8 Polarization: -29.58 SS G_CDS: -0.76 Total: -30.34 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.08 Total: 17.99 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -34.45 -6.05 -40.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001452245721.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.575 kcal (2) G-P(sol) polarization free energy of solvation -34.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds