Wall clock time and date at job start Mon Mar 30 2020 00:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00123 * 2 1 4 4 H 1.48499 * 109.47506 * 265.91406 * 3 2 1 5 5 H 1.48503 * 109.47196 * 25.91487 * 3 2 1 6 6 H 1.48508 * 109.47358 * 145.91270 * 3 2 1 7 7 C 1.37883 * 119.99831 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00138 * 354.29267 * 7 2 1 9 9 C 1.50699 * 119.99921 * 174.28615 * 7 2 1 10 10 O 1.42906 * 110.91777 * 325.06541 * 9 7 2 11 11 C 1.55147 * 111.00588 * 201.15994 * 9 7 2 12 12 C 1.54322 * 102.94317 * 206.42880 * 11 9 7 13 13 N 1.47016 * 107.27426 * 22.18862 * 12 11 9 14 14 C 1.34776 * 125.65396 * 181.09348 * 13 12 11 15 15 O 1.21277 * 120.00222 * 179.97438 * 14 13 12 16 16 C 1.50708 * 119.99620 * 359.96498 * 14 13 12 17 17 C 1.53001 * 109.47039 * 179.97438 * 16 14 13 18 18 C 1.53000 * 109.47221 * 179.97438 * 17 16 14 19 19 C 1.52993 * 109.47286 * 179.97438 * 18 17 16 20 20 C 1.52995 * 109.47110 * 179.97438 * 19 18 17 21 21 O 1.42901 * 109.47078 * 180.02562 * 20 19 18 22 22 C 1.47430 * 108.70225 * 1.06586 * 13 12 11 23 23 H 0.97000 * 119.99637 * 0.02562 * 1 2 3 24 24 H 0.96693 * 113.99409 * 297.87582 * 10 9 7 25 25 H 1.09008 * 110.72271 * 324.78987 * 11 9 7 26 26 H 1.09001 * 110.72287 * 88.06438 * 11 9 7 27 27 H 1.09006 * 109.88333 * 262.77431 * 12 11 9 28 28 H 1.09001 * 110.01321 * 141.68148 * 12 11 9 29 29 H 1.08997 * 109.47117 * 299.99651 * 16 14 13 30 30 H 1.09000 * 109.46840 * 59.99762 * 16 14 13 31 31 H 1.08997 * 109.47145 * 299.99958 * 17 16 14 32 32 H 1.09002 * 109.47248 * 59.99777 * 17 16 14 33 33 H 1.09003 * 109.46639 * 300.00071 * 18 17 16 34 34 H 1.09002 * 109.47171 * 59.99755 * 18 17 16 35 35 H 1.08997 * 109.47307 * 300.00121 * 19 18 17 36 36 H 1.09002 * 109.47022 * 59.99901 * 19 18 17 37 37 H 1.08997 * 109.47365 * 300.00368 * 20 19 18 38 38 H 1.09002 * 109.47028 * 60.00187 * 20 19 18 39 39 H 0.96706 * 114.00125 * 180.02562 * 21 20 19 40 40 H 1.08996 * 110.36335 * 217.03274 * 22 13 12 41 41 H 1.08997 * 110.45940 * 94.75562 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5831 1.9965 -1.3965 5 1 1.4061 2.6760 0.6119 6 1 3.5009 1.4666 0.7847 7 6 2.0045 -1.1941 0.0005 8 1 1.4686 -2.1270 0.0940 9 6 3.5059 -1.1974 -0.1294 10 8 3.9460 -0.1440 -0.9889 11 6 4.0178 -2.5739 -0.6297 12 6 5.4529 -2.6349 -0.0655 13 7 5.5132 -1.7094 1.0752 14 6 6.6035 -1.4591 1.8269 15 8 6.5377 -0.6723 2.7475 16 6 7.9043 -2.1570 1.5235 17 6 8.9733 -1.6977 2.5171 18 6 10.2938 -2.4068 2.2096 19 6 11.3629 -1.9470 3.2027 20 6 12.6831 -2.6565 2.8955 21 8 13.6816 -2.2275 3.8235 22 6 4.1836 -1.0999 1.2602 23 1 -0.4849 0.8401 -0.0004 24 1 3.6209 -0.2156 -1.8968 25 1 3.4093 -3.3824 -0.2242 26 1 4.0299 -2.6082 -1.7191 27 1 6.1655 -2.3270 -0.8308 28 1 5.6804 -3.6479 0.2666 29 1 7.7670 -3.2349 1.6096 30 1 8.2209 -1.9108 0.5100 31 1 9.1105 -0.6199 2.4307 32 1 8.6568 -1.9435 3.5308 33 1 10.1561 -3.4846 2.2963 34 1 10.6104 -2.1614 1.1958 35 1 11.5003 -0.8693 3.1155 36 1 11.0464 -2.1921 4.2165 37 1 12.5454 -3.7342 2.9830 38 1 12.9998 -2.4118 1.8816 39 1 14.5468 -2.6374 3.6877 40 1 4.2830 -0.0571 1.5615 41 1 3.6098 -1.6553 2.0020 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001452245733.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:11 Heat of formation + Delta-G solvation = -154.407806 kcal Electronic energy + Delta-G solvation = -21064.320823 eV Core-core repulsion = 17750.465467 eV Total energy + Delta-G solvation = -3313.855356 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.68489 -37.83583 -37.44120 -35.29589 -34.71393 -32.40156 -31.57216 -30.20865 -28.57115 -26.80105 -24.82236 -22.92354 -21.98509 -21.20089 -19.84460 -18.75461 -17.65308 -17.52749 -16.65872 -16.39089 -15.63270 -15.32630 -14.87026 -14.68192 -14.48993 -14.26070 -13.86118 -13.31960 -12.92378 -12.70893 -12.55622 -12.38135 -12.02107 -11.91596 -11.71286 -11.55496 -11.35914 -11.29121 -11.08236 -10.88721 -10.68317 -10.59934 -10.32220 -10.30101 -10.21423 -9.46901 -9.22917 -8.62149 -8.56221 -8.08733 -6.23503 -4.36650 3.03039 3.41759 3.45342 3.54814 3.70429 3.88018 4.46904 4.64316 4.68005 4.86072 4.88232 4.98329 5.04142 5.07577 5.11719 5.23674 5.30885 5.41165 5.48471 5.54239 5.62958 5.68229 5.71739 5.79437 5.97021 6.04347 6.11649 6.15905 6.29356 6.50711 6.56228 6.67973 6.73754 6.99074 7.26850 7.42656 8.03774 8.09259 8.58171 8.62674 8.78728 9.38152 10.85160 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.040214 B = 0.003382 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.116119 B = 8277.009026 C = 8586.171443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.076 3.924 3 Si 0.940 3.060 4 H -0.289 1.289 5 H -0.322 1.322 6 H -0.266 1.266 7 C -0.554 4.554 8 H 0.082 0.918 9 C 0.218 3.782 10 O -0.562 6.562 11 C -0.148 4.148 12 C 0.105 3.895 13 N -0.614 5.614 14 C 0.519 3.481 15 O -0.552 6.552 16 C -0.135 4.135 17 C -0.103 4.103 18 C -0.116 4.116 19 C -0.122 4.122 20 C 0.075 3.925 21 O -0.577 6.577 22 C 0.111 3.889 23 H 0.268 0.732 24 H 0.371 0.629 25 H 0.079 0.921 26 H 0.074 0.926 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.045 0.955 38 H 0.045 0.955 39 H 0.378 0.622 40 H 0.077 0.923 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.646 -8.307 -0.430 22.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.129 4.129 3 Si 0.774 3.226 4 H -0.217 1.217 5 H -0.253 1.253 6 H -0.192 1.192 7 C -0.591 4.591 8 H 0.100 0.900 9 C 0.177 3.823 10 O -0.369 6.369 11 C -0.186 4.186 12 C -0.018 4.018 13 N -0.347 5.347 14 C 0.308 3.692 15 O -0.431 6.431 16 C -0.175 4.175 17 C -0.141 4.141 18 C -0.154 4.154 19 C -0.159 4.159 20 C -0.003 4.003 21 O -0.382 6.382 22 C -0.011 4.011 23 H 0.077 0.923 24 H 0.219 0.781 25 H 0.098 0.902 26 H 0.093 0.907 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.224 0.776 40 H 0.096 0.904 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 20.292 -7.252 0.875 21.566 hybrid contribution 0.432 0.161 -0.886 0.999 sum 20.723 -7.091 -0.011 21.903 Atomic orbital electron populations 1.69954 1.06789 1.27909 1.47339 1.25137 0.94904 1.00465 0.92428 0.85877 0.78204 0.80271 0.78237 1.21670 1.25266 1.19230 1.21166 0.88201 0.95364 1.54352 0.89995 1.20228 0.93471 0.82428 0.86153 1.86168 1.76260 1.50270 1.24214 1.23242 0.93485 1.01285 1.00606 1.22002 0.99304 0.92275 0.88260 1.48741 1.11104 1.43610 1.31222 1.20299 0.84540 0.82509 0.81862 1.90675 1.84921 1.36675 1.30804 1.21641 0.93101 1.01214 1.01501 1.21316 0.92449 1.01026 0.99324 1.21517 0.94459 1.00404 0.98986 1.21530 0.92760 1.01177 1.00471 1.22240 0.88820 0.97543 0.91698 1.86497 1.22980 1.71106 1.57629 1.22941 0.80279 0.99132 0.98734 0.92302 0.78095 0.90216 0.90721 0.92172 0.92405 0.89330 0.89296 0.91083 0.91089 0.91759 0.91759 0.91092 0.91103 0.93716 0.93707 0.77552 0.90422 0.90337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.04 13.96 55.43 0.77 -25.27 16 2 C 0.08 2.11 5.46 -17.82 -0.10 2.02 16 3 Si 0.94 23.68 24.85 -169.99 -4.22 19.45 16 4 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.32 -8.32 7.11 56.52 0.40 -7.92 16 6 H -0.27 -6.90 5.22 56.52 0.30 -6.61 16 7 C -0.55 -14.41 8.87 -34.44 -0.31 -14.72 16 8 H 0.08 2.29 7.98 -52.49 -0.42 1.87 16 9 C 0.22 4.73 0.69 -89.63 -0.06 4.67 16 10 O -0.56 -12.09 8.88 -35.23 -0.31 -12.40 16 11 C -0.15 -2.53 6.14 -24.90 -0.15 -2.68 16 12 C 0.10 1.57 6.49 -3.07 -0.02 1.55 16 13 N -0.61 -11.42 3.33 -170.52 -0.57 -11.99 16 14 C 0.52 9.39 7.85 -10.98 -0.09 9.30 16 15 O -0.55 -12.16 16.24 5.56 0.09 -12.07 16 16 C -0.13 -1.66 4.89 -27.88 -0.14 -1.80 16 17 C -0.10 -1.21 4.50 -26.73 -0.12 -1.33 16 18 C -0.12 -1.00 5.21 -26.73 -0.14 -1.14 16 19 C -0.12 -1.11 5.58 -26.74 -0.15 -1.26 16 20 C 0.07 0.57 7.05 37.16 0.26 0.84 16 21 O -0.58 -5.04 13.66 -35.23 -0.48 -5.52 16 22 C 0.11 2.45 5.79 -2.52 -0.01 2.44 16 23 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 24 H 0.37 6.86 9.02 45.56 0.41 7.27 16 25 H 0.08 1.36 7.97 -51.92 -0.41 0.95 16 26 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.07 0.93 8.10 -51.93 -0.42 0.51 16 32 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.38 1.46 9.12 45.56 0.42 1.88 16 40 H 0.08 1.94 6.10 -51.93 -0.32 1.63 16 41 H 0.08 1.75 8.03 -51.93 -0.42 1.34 16 LS Contribution 331.16 15.07 4.99 4.99 Total: -1.00 -33.97 331.16 -6.23 -40.20 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -5.47 Total: 4.71 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: -1.02 Total: -2.11 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: 0.21 Total: -37.26 kcal Atomic # 8 Polarization: -29.28 SS G_CDS: -0.70 Total: -29.99 kcal Atomic # 14 Polarization: 23.68 SS G_CDS: -4.22 Total: 19.45 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.97 -6.23 -40.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001452245733.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.210 kcal (2) G-P(sol) polarization free energy of solvation -33.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds