Wall clock time and date at job start Mon Mar 30 2020 00:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00123 * 2 1 4 4 H 1.48499 * 109.47506 * 265.91406 * 3 2 1 5 5 H 1.48503 * 109.47196 * 25.91487 * 3 2 1 6 6 H 1.48508 * 109.47358 * 145.91270 * 3 2 1 7 7 C 1.37883 * 119.99831 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00138 * 354.29267 * 7 2 1 9 9 C 1.50699 * 119.99921 * 174.28615 * 7 2 1 10 10 O 1.42906 * 110.91777 * 325.06541 * 9 7 2 11 11 C 1.55147 * 111.00588 * 201.15994 * 9 7 2 12 12 C 1.54322 * 102.94317 * 206.42880 * 11 9 7 13 13 N 1.47016 * 107.27426 * 22.18862 * 12 11 9 14 14 C 1.34776 * 125.65396 * 181.09348 * 13 12 11 15 15 O 1.21277 * 120.00222 * 179.97438 * 14 13 12 16 16 C 1.50708 * 119.99620 * 359.96498 * 14 13 12 17 17 C 1.53001 * 109.47039 * 179.97438 * 16 14 13 18 18 C 1.53000 * 109.47221 * 179.97438 * 17 16 14 19 19 C 1.52993 * 109.47286 * 179.97438 * 18 17 16 20 20 C 1.52995 * 109.47110 * 179.97438 * 19 18 17 21 21 O 1.42901 * 109.47078 * 180.02562 * 20 19 18 22 22 C 1.47430 * 108.70225 * 1.06586 * 13 12 11 23 23 H 0.97000 * 119.99637 * 0.02562 * 1 2 3 24 24 H 0.96693 * 113.99409 * 297.87582 * 10 9 7 25 25 H 1.09008 * 110.72271 * 324.78987 * 11 9 7 26 26 H 1.09001 * 110.72287 * 88.06438 * 11 9 7 27 27 H 1.09006 * 109.88333 * 262.77431 * 12 11 9 28 28 H 1.09001 * 110.01321 * 141.68148 * 12 11 9 29 29 H 1.08997 * 109.47117 * 299.99651 * 16 14 13 30 30 H 1.09000 * 109.46840 * 59.99762 * 16 14 13 31 31 H 1.08997 * 109.47145 * 299.99958 * 17 16 14 32 32 H 1.09002 * 109.47248 * 59.99777 * 17 16 14 33 33 H 1.09003 * 109.46639 * 300.00071 * 18 17 16 34 34 H 1.09002 * 109.47171 * 59.99755 * 18 17 16 35 35 H 1.08997 * 109.47307 * 300.00121 * 19 18 17 36 36 H 1.09002 * 109.47022 * 59.99901 * 19 18 17 37 37 H 1.08997 * 109.47365 * 300.00368 * 20 19 18 38 38 H 1.09002 * 109.47028 * 60.00187 * 20 19 18 39 39 H 0.96706 * 114.00125 * 180.02562 * 21 20 19 40 40 H 1.08996 * 110.36335 * 217.03274 * 22 13 12 41 41 H 1.08997 * 110.45940 * 94.75562 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5831 1.9965 -1.3965 5 1 1.4061 2.6760 0.6119 6 1 3.5009 1.4666 0.7847 7 6 2.0045 -1.1941 0.0005 8 1 1.4686 -2.1270 0.0940 9 6 3.5059 -1.1974 -0.1294 10 8 3.9460 -0.1440 -0.9889 11 6 4.0178 -2.5739 -0.6297 12 6 5.4529 -2.6349 -0.0655 13 7 5.5132 -1.7094 1.0752 14 6 6.6035 -1.4591 1.8269 15 8 6.5377 -0.6723 2.7475 16 6 7.9043 -2.1570 1.5235 17 6 8.9733 -1.6977 2.5171 18 6 10.2938 -2.4068 2.2096 19 6 11.3629 -1.9470 3.2027 20 6 12.6831 -2.6565 2.8955 21 8 13.6816 -2.2275 3.8235 22 6 4.1836 -1.0999 1.2602 23 1 -0.4849 0.8401 -0.0004 24 1 3.6209 -0.2156 -1.8968 25 1 3.4093 -3.3824 -0.2242 26 1 4.0299 -2.6082 -1.7191 27 1 6.1655 -2.3270 -0.8308 28 1 5.6804 -3.6479 0.2666 29 1 7.7670 -3.2349 1.6096 30 1 8.2209 -1.9108 0.5100 31 1 9.1105 -0.6199 2.4307 32 1 8.6568 -1.9435 3.5308 33 1 10.1561 -3.4846 2.2963 34 1 10.6104 -2.1614 1.1958 35 1 11.5003 -0.8693 3.1155 36 1 11.0464 -2.1921 4.2165 37 1 12.5454 -3.7342 2.9830 38 1 12.9998 -2.4118 1.8816 39 1 14.5468 -2.6374 3.6877 40 1 4.2830 -0.0571 1.5615 41 1 3.6098 -1.6553 2.0020 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001452245733.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:11 Heat of formation + Delta-G solvation = -182.845619 kcal Electronic energy + Delta-G solvation = -21065.553980 eV Core-core repulsion = 17750.465467 eV Total energy + Delta-G solvation = -3315.088512 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.13695 -39.28867 -38.16498 -36.36317 -36.08431 -34.49389 -32.60550 -31.59503 -30.11553 -27.98040 -26.39517 -24.23479 -22.92157 -21.95424 -21.53536 -20.12608 -19.45060 -18.35623 -17.94201 -17.34128 -17.16444 -16.63369 -16.39655 -16.24708 -15.62052 -15.33424 -15.02501 -14.80769 -14.38108 -14.08059 -13.91750 -13.61953 -13.48604 -13.39023 -13.16865 -12.66309 -12.56289 -12.37459 -12.21504 -12.16570 -12.08368 -11.93254 -11.77421 -11.47487 -11.27176 -10.91490 -10.84905 -10.68337 -10.33869 -9.56784 -8.40331 -6.52168 1.39553 1.46437 1.64573 1.67773 2.09273 2.36697 2.93483 3.29839 3.41628 3.69116 3.85758 3.96920 4.07546 4.16139 4.20783 4.30851 4.33603 4.48232 4.52335 4.59774 4.65583 4.74673 4.77810 4.84558 4.88875 4.96827 4.99919 5.03792 5.18479 5.24447 5.26956 5.33858 5.38857 5.47396 5.54505 6.03378 6.56669 6.66740 6.92586 7.00091 7.19844 7.28256 8.72398 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.040214 B = 0.003382 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.116119 B = 8277.009026 C = 8586.171443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.032 3.968 3 Si 0.992 3.008 4 H -0.271 1.271 5 H -0.335 1.335 6 H -0.281 1.281 7 C -0.543 4.543 8 H 0.056 0.944 9 C 0.212 3.788 10 O -0.567 6.567 11 C -0.139 4.139 12 C 0.106 3.894 13 N -0.617 5.617 14 C 0.508 3.492 15 O -0.605 6.605 16 C -0.120 4.120 17 C -0.102 4.102 18 C -0.103 4.103 19 C -0.126 4.126 20 C 0.075 3.925 21 O -0.603 6.603 22 C 0.112 3.888 23 H 0.267 0.733 24 H 0.386 0.614 25 H 0.077 0.923 26 H 0.101 0.899 27 H 0.090 0.910 28 H 0.096 0.904 29 H 0.122 0.878 30 H 0.117 0.883 31 H 0.047 0.953 32 H 0.051 0.949 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.053 0.947 36 H 0.055 0.945 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.397 0.603 40 H 0.039 0.961 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.604 -10.349 -2.386 25.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.169 4.169 3 Si 0.827 3.173 4 H -0.197 1.197 5 H -0.267 1.267 6 H -0.208 1.208 7 C -0.581 4.581 8 H 0.074 0.926 9 C 0.172 3.828 10 O -0.376 6.376 11 C -0.177 4.177 12 C -0.016 4.016 13 N -0.350 5.350 14 C 0.299 3.701 15 O -0.487 6.487 16 C -0.159 4.159 17 C -0.140 4.140 18 C -0.141 4.141 19 C -0.164 4.164 20 C -0.003 4.003 21 O -0.412 6.412 22 C -0.011 4.011 23 H 0.076 0.924 24 H 0.235 0.765 25 H 0.095 0.905 26 H 0.119 0.881 27 H 0.108 0.892 28 H 0.115 0.885 29 H 0.140 0.860 30 H 0.135 0.865 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.103 0.897 34 H 0.100 0.900 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.247 0.753 40 H 0.058 0.942 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 23.287 -9.333 -1.132 25.114 hybrid contribution -0.485 0.754 -0.220 0.923 sum 22.803 -8.579 -1.352 24.401 Atomic orbital electron populations 1.70049 1.08082 1.28388 1.50235 1.25739 0.95233 1.03007 0.92918 0.85021 0.76154 0.77497 0.78641 1.19692 1.26737 1.20822 1.21477 0.90836 0.93817 1.51991 0.92611 1.20100 0.90742 0.85464 0.86512 1.86110 1.75886 1.50422 1.25206 1.23150 0.94741 0.97450 1.02361 1.22258 0.98226 0.93491 0.87585 1.48846 1.09710 1.43954 1.32478 1.21480 0.85952 0.81926 0.80730 1.90652 1.85836 1.39096 1.33110 1.21694 0.89217 1.02247 1.02763 1.21291 0.94246 1.00081 0.98428 1.21416 0.92057 1.01059 0.99520 1.21544 0.94279 1.00481 1.00051 1.22264 0.87741 0.98130 0.92124 1.86444 1.24481 1.71945 1.58325 1.22545 0.82885 0.97071 0.98641 0.92370 0.76452 0.90475 0.88063 0.89186 0.88546 0.85959 0.86507 0.93440 0.93026 0.89675 0.89957 0.92771 0.92589 0.92082 0.92209 0.75293 0.94244 0.91765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.11 13.96 21.45 0.30 -55.81 16 2 C 0.03 1.79 5.46 84.66 0.46 2.25 16 3 Si 0.99 49.83 24.85 68.60 1.70 51.53 16 4 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 5 H -0.34 -17.41 7.11 99.48 0.71 -16.70 16 6 H -0.28 -14.76 5.22 99.48 0.52 -14.24 16 7 C -0.54 -28.54 8.87 25.60 0.23 -28.32 16 8 H 0.06 3.18 7.98 -2.91 -0.02 3.16 16 9 C 0.21 9.00 0.69 -10.15 -0.01 8.99 16 10 O -0.57 -23.29 8.88 -148.98 -1.32 -24.61 16 11 C -0.14 -4.27 6.14 31.78 0.20 -4.08 16 12 C 0.11 2.65 6.49 86.73 0.56 3.22 16 13 N -0.62 -21.67 3.33 -811.78 -2.70 -24.37 16 14 C 0.51 17.56 7.85 87.66 0.69 18.25 16 15 O -0.60 -27.15 16.24 -3.02 -0.05 -27.20 16 16 C -0.12 -2.49 4.89 29.85 0.15 -2.35 16 17 C -0.10 -2.21 4.50 30.59 0.14 -2.07 16 18 C -0.10 -1.43 5.21 30.59 0.16 -1.27 16 19 C -0.13 -2.10 5.58 30.59 0.17 -1.93 16 20 C 0.07 0.95 7.05 71.98 0.51 1.46 16 21 O -0.60 -9.50 13.66 -148.98 -2.04 -11.54 16 22 C 0.11 4.99 5.79 86.86 0.50 5.49 16 23 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 24 H 0.39 13.20 9.02 -74.06 -0.67 12.53 16 25 H 0.08 2.42 7.97 -2.38 -0.02 2.40 16 26 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 27 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 28 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.05 1.23 8.10 -2.39 -0.02 1.21 16 32 H 0.05 1.30 8.10 -2.39 -0.02 1.28 16 33 H 0.08 0.87 8.14 -2.39 -0.02 0.86 16 34 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.40 2.29 9.12 -74.05 -0.68 1.61 16 40 H 0.04 2.04 6.10 -2.39 -0.01 2.02 16 41 H 0.06 2.96 8.03 -2.39 -0.02 2.94 16 Total: -1.00 -77.91 331.16 -0.86 -78.77 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -0.51 Total: 13.59 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: 3.75 Total: -0.36 kcal Atomic # 7 Polarization: -77.78 SS G_CDS: -2.40 Total: -80.18 kcal Atomic # 8 Polarization: -59.94 SS G_CDS: -3.41 Total: -63.35 kcal Atomic # 14 Polarization: 49.83 SS G_CDS: 1.70 Total: 51.53 kcal Total: -77.91 -0.86 -78.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001452245733.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.080 kcal (2) G-P(sol) polarization free energy of solvation -77.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds