Wall clock time and date at job start Mon Mar 30 2020 01:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47656 * 2 1 4 4 C 1.50702 * 109.47228 * 239.99573 * 2 1 3 5 5 H 1.08003 * 120.00345 * 240.00038 * 4 2 1 6 6 C 1.37874 * 119.99554 * 60.00545 * 4 2 1 7 7 N 1.31510 * 120.00326 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 119.99929 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47169 * 59.99532 * 8 6 4 10 10 H 1.48497 * 109.47353 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.46661 * 299.99699 * 8 6 4 12 12 C 1.53005 * 109.47012 * 119.99821 * 2 1 3 13 13 N 1.46501 * 109.47290 * 299.99873 * 12 2 1 14 14 C 1.34770 * 120.00013 * 179.97438 * 13 12 2 15 15 O 1.21281 * 119.99965 * 0.02562 * 14 13 12 16 16 C 1.50697 * 120.00148 * 180.02562 * 14 13 12 17 17 C 1.52995 * 109.47391 * 180.02562 * 16 14 13 18 18 O 1.42967 * 109.47161 * 175.00116 * 17 16 14 19 19 C 1.43095 * 113.77014 * 178.79211 * 18 17 16 20 20 C 1.53261 * 108.94358 * 302.02838 * 19 18 17 21 21 C 1.53259 * 108.84186 * 54.52606 * 20 19 18 22 22 O 1.42968 * 109.47265 * 294.99606 * 17 16 14 23 23 H 1.08996 * 109.47111 * 300.00468 * 1 2 3 24 24 H 1.08999 * 109.47225 * 59.99842 * 1 2 3 25 25 H 1.08999 * 109.47635 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47418 * 179.97438 * 3 2 1 27 27 H 1.08999 * 109.46932 * 300.00337 * 3 2 1 28 28 H 1.09000 * 109.46558 * 59.99753 * 3 2 1 29 29 H 0.97002 * 120.00283 * 180.02562 * 7 6 4 30 30 H 1.09006 * 109.47165 * 179.97438 * 12 2 1 31 31 H 1.09008 * 109.47084 * 60.00145 * 12 2 1 32 32 H 0.96996 * 119.99559 * 0.02562 * 13 12 2 33 33 H 1.09006 * 109.47218 * 59.99878 * 16 14 13 34 34 H 1.09008 * 109.47128 * 300.00317 * 16 14 13 35 35 H 1.08998 * 109.47129 * 54.99933 * 17 16 14 36 36 H 1.08997 * 109.55621 * 61.86774 * 19 18 17 37 37 H 1.08999 * 109.55712 * 182.08124 * 19 18 17 38 38 H 1.08997 * 109.57207 * 174.33189 * 20 19 18 39 39 H 1.08998 * 109.57441 * 294.58821 * 20 19 18 40 40 H 1.08994 * 109.56239 * 65.31171 * 21 20 19 41 41 H 1.08999 * 109.55602 * 185.64189 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4826 7 7 0.9429 0.8296 -2.6034 8 14 2.3213 -1.1205 -4.0079 9 1 1.8258 -2.5203 -4.0077 10 1 1.8260 -0.4207 -5.2204 11 1 3.8064 -1.1211 -4.0080 12 6 2.0399 -0.7212 1.2493 13 7 1.5516 -0.0306 2.4455 14 6 1.8768 -0.4913 3.6695 15 8 2.5740 -1.4774 3.7808 16 6 1.3740 0.2187 4.9000 17 6 1.8841 -0.5024 6.1492 18 8 1.5054 0.2357 7.3136 19 6 1.9146 -0.3743 8.5416 20 6 1.3150 -1.7825 8.6216 21 6 1.7108 -2.5613 7.3624 22 8 1.3144 -1.8123 6.2093 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 3.1300 1.4424 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 0.7082 1.1608 -3.4844 30 1 3.1300 -0.7217 1.2491 31 1 1.6766 -1.7490 1.2493 32 1 0.9937 0.7578 2.3564 33 1 0.2839 0.2188 4.8996 34 1 1.7373 1.2465 4.9004 35 1 2.9704 -0.5802 6.1057 36 1 3.0022 -0.4385 8.5724 37 1 1.5604 0.2231 9.3816 38 1 1.7006 -2.2939 9.5036 39 1 0.2290 -1.7140 8.6847 40 1 2.7907 -2.7083 7.3485 41 1 1.2090 -3.5289 7.3590 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001460817277.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:57 Heat of formation + Delta-G solvation = -143.571690 kcal Electronic energy + Delta-G solvation = -21505.110941 eV Core-core repulsion = 18191.725474 eV Total energy + Delta-G solvation = -3313.385467 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.19126 -38.97685 -36.34946 -35.72216 -33.28800 -33.22757 -31.04592 -29.95064 -26.13594 -25.70493 -25.69678 -25.04133 -23.23696 -21.31663 -20.00535 -18.76020 -17.71832 -16.79063 -16.59449 -16.02295 -15.59797 -15.33675 -14.89341 -14.76632 -14.68475 -14.38854 -13.42913 -13.16426 -13.09584 -12.88763 -12.77944 -12.15818 -11.95150 -11.71283 -11.33776 -11.25521 -11.21112 -11.15828 -10.82378 -10.71649 -10.35997 -10.19039 -10.15064 -9.76102 -9.61028 -9.52757 -9.21027 -8.77466 -8.42617 -8.27719 -6.00443 -4.10606 3.09122 3.17655 3.31320 3.35518 3.39377 3.59778 4.05241 4.42194 4.49734 4.51149 4.75555 4.87076 4.95352 5.12673 5.19703 5.26177 5.31565 5.41962 5.54177 5.63081 5.68827 5.81886 6.26343 6.35964 6.53535 6.71250 6.80950 6.85148 6.96142 7.04405 7.06770 7.09814 7.37877 7.57898 7.70986 8.03205 8.07930 8.17767 8.40489 8.73822 8.90120 9.55126 11.00923 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.047264 B = 0.003442 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.278317 B = 8131.989884 C = 8407.047837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.056 3.944 3 C -0.131 4.131 4 C -0.507 4.507 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.133 3.867 13 N -0.716 5.716 14 C 0.511 3.489 15 O -0.544 6.544 16 C -0.130 4.130 17 C 0.266 3.734 18 O -0.397 6.397 19 C 0.059 3.941 20 C -0.193 4.193 21 C 0.058 3.942 22 O -0.375 6.375 23 H 0.007 0.993 24 H 0.085 0.915 25 H 0.026 0.974 26 H 0.026 0.974 27 H 0.085 0.915 28 H 0.007 0.993 29 H 0.260 0.740 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.398 0.602 33 H 0.107 0.893 34 H 0.113 0.887 35 H 0.065 0.935 36 H 0.053 0.947 37 H 0.098 0.902 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.054 0.946 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.058 0.024 19.267 19.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.055 3.945 3 C -0.188 4.188 4 C -0.545 4.545 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.010 3.990 13 N -0.368 5.368 14 C 0.296 3.704 15 O -0.422 6.422 16 C -0.170 4.170 17 C 0.170 3.830 18 O -0.318 6.318 19 C -0.017 4.017 20 C -0.231 4.231 21 C -0.019 4.019 22 O -0.295 6.295 23 H 0.026 0.974 24 H 0.104 0.896 25 H 0.046 0.954 26 H 0.045 0.955 27 H 0.104 0.896 28 H 0.026 0.974 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.233 0.767 33 H 0.125 0.875 34 H 0.131 0.869 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.116 0.884 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.072 0.928 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.142 -0.471 19.006 19.012 hybrid contribution 0.317 -0.250 -0.584 0.710 sum 0.459 -0.720 18.421 18.441 Atomic orbital electron populations 1.21827 0.97732 0.99208 1.00096 1.18354 0.92827 0.92753 0.90554 1.21830 0.98551 0.98360 1.00107 1.20962 1.31531 1.12111 0.89943 0.92499 1.24875 0.94859 0.94920 0.98826 1.69792 1.36619 1.22771 1.23315 0.86634 0.79222 0.79813 0.82187 1.20280 1.21338 1.20288 1.21710 0.98058 0.95830 0.83357 1.46257 1.52768 1.31869 1.05863 1.20066 0.80998 0.84788 0.84568 1.90686 1.38453 1.26200 1.86847 1.21489 1.04351 1.00455 0.90716 1.22892 0.95728 0.79280 0.85076 1.88059 1.80491 1.48647 1.14563 1.22614 0.98490 0.93615 0.87016 1.22812 1.03134 0.97513 0.99678 1.22599 0.99718 0.95226 0.84359 1.88208 1.71611 1.26581 1.43088 0.97427 0.89623 0.95440 0.95470 0.89609 0.97442 0.92956 0.92778 0.92726 0.76665 0.87482 0.86914 0.91768 0.92846 0.88382 0.89876 0.90042 0.92814 0.88432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.97 8.08 37.15 0.30 -2.67 16 2 C 0.06 1.30 0.50 -155.66 -0.08 1.22 16 3 C -0.13 -2.94 8.08 37.16 0.30 -2.64 16 4 C -0.51 -13.38 8.01 -34.44 -0.28 -13.65 16 5 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 6 C 0.07 1.76 5.15 -17.82 -0.09 1.66 16 7 N -0.89 -23.72 9.35 55.43 0.52 -23.20 16 8 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 9 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 C 0.13 2.86 4.50 -4.04 -0.02 2.84 16 13 N -0.72 -12.83 4.96 -60.29 -0.30 -13.13 16 14 C 0.51 8.96 7.71 -10.99 -0.08 8.87 16 15 O -0.54 -11.49 15.42 -8.85 -0.14 -11.63 16 16 C -0.13 -1.74 5.78 -27.89 -0.16 -1.90 16 17 C 0.27 3.68 2.80 37.16 0.10 3.78 16 18 O -0.40 -4.93 10.54 -59.03 -0.62 -5.55 16 19 C 0.06 0.54 6.96 37.29 0.26 0.80 16 20 C -0.19 -1.64 6.35 -26.46 -0.17 -1.81 16 21 C 0.06 0.63 6.96 37.29 0.26 0.89 16 22 O -0.37 -5.67 9.77 -64.76 -0.63 -6.31 16 23 H 0.01 0.14 6.86 -51.93 -0.36 -0.22 16 24 H 0.09 2.14 6.07 -51.93 -0.32 1.83 16 25 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.09 2.14 6.07 -51.93 -0.32 1.82 16 28 H 0.01 0.13 6.86 -51.93 -0.36 -0.23 16 29 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 30 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 31 H 0.05 1.25 8.14 -51.92 -0.42 0.82 16 32 H 0.40 6.37 6.16 -40.82 -0.25 6.12 16 33 H 0.11 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.11 1.23 8.14 -51.92 -0.42 0.81 16 35 H 0.06 0.91 7.96 -51.93 -0.41 0.50 16 36 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 325.52 15.07 4.91 4.91 Total: -1.00 -30.20 325.52 -7.56 -37.76 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -6.62 Total: 3.97 kcal Atomic # 6 Polarization: -2.96 SS G_CDS: 0.34 Total: -2.62 kcal Atomic # 7 Polarization: -36.55 SS G_CDS: 0.22 Total: -36.33 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: -1.39 Total: -23.49 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.20 -7.56 -37.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460817277.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.810 kcal (2) G-P(sol) polarization free energy of solvation -30.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds