Wall clock time and date at job start Mon Mar 30 2020 01:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47656 * 2 1 4 4 C 1.50702 * 109.47228 * 239.99573 * 2 1 3 5 5 H 1.08003 * 120.00345 * 240.00038 * 4 2 1 6 6 C 1.37874 * 119.99554 * 60.00545 * 4 2 1 7 7 N 1.31510 * 120.00326 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 119.99929 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47169 * 59.99532 * 8 6 4 10 10 H 1.48497 * 109.47353 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.46661 * 299.99699 * 8 6 4 12 12 C 1.53005 * 109.47012 * 119.99821 * 2 1 3 13 13 N 1.46501 * 109.47290 * 299.99873 * 12 2 1 14 14 C 1.34770 * 120.00013 * 179.97438 * 13 12 2 15 15 O 1.21281 * 119.99965 * 0.02562 * 14 13 12 16 16 C 1.50697 * 120.00148 * 180.02562 * 14 13 12 17 17 C 1.52995 * 109.47391 * 180.02562 * 16 14 13 18 18 O 1.42967 * 109.47161 * 175.00116 * 17 16 14 19 19 C 1.43095 * 113.77014 * 178.79211 * 18 17 16 20 20 C 1.53261 * 108.94358 * 302.02838 * 19 18 17 21 21 C 1.53259 * 108.84186 * 54.52606 * 20 19 18 22 22 O 1.42968 * 109.47265 * 294.99606 * 17 16 14 23 23 H 1.08996 * 109.47111 * 300.00468 * 1 2 3 24 24 H 1.08999 * 109.47225 * 59.99842 * 1 2 3 25 25 H 1.08999 * 109.47635 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47418 * 179.97438 * 3 2 1 27 27 H 1.08999 * 109.46932 * 300.00337 * 3 2 1 28 28 H 1.09000 * 109.46558 * 59.99753 * 3 2 1 29 29 H 0.97002 * 120.00283 * 180.02562 * 7 6 4 30 30 H 1.09006 * 109.47165 * 179.97438 * 12 2 1 31 31 H 1.09008 * 109.47084 * 60.00145 * 12 2 1 32 32 H 0.96996 * 119.99559 * 0.02562 * 13 12 2 33 33 H 1.09006 * 109.47218 * 59.99878 * 16 14 13 34 34 H 1.09008 * 109.47128 * 300.00317 * 16 14 13 35 35 H 1.08998 * 109.47129 * 54.99933 * 17 16 14 36 36 H 1.08997 * 109.55621 * 61.86774 * 19 18 17 37 37 H 1.08999 * 109.55712 * 182.08124 * 19 18 17 38 38 H 1.08997 * 109.57207 * 174.33189 * 20 19 18 39 39 H 1.08998 * 109.57441 * 294.58821 * 20 19 18 40 40 H 1.08994 * 109.56239 * 65.31171 * 21 20 19 41 41 H 1.08999 * 109.55602 * 185.64189 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4826 7 7 0.9429 0.8296 -2.6034 8 14 2.3213 -1.1205 -4.0079 9 1 1.8258 -2.5203 -4.0077 10 1 1.8260 -0.4207 -5.2204 11 1 3.8064 -1.1211 -4.0080 12 6 2.0399 -0.7212 1.2493 13 7 1.5516 -0.0306 2.4455 14 6 1.8768 -0.4913 3.6695 15 8 2.5740 -1.4774 3.7808 16 6 1.3740 0.2187 4.9000 17 6 1.8841 -0.5024 6.1492 18 8 1.5054 0.2357 7.3136 19 6 1.9146 -0.3743 8.5416 20 6 1.3150 -1.7825 8.6216 21 6 1.7108 -2.5613 7.3624 22 8 1.3144 -1.8123 6.2093 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 3.1300 1.4424 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 0.7082 1.1608 -3.4844 30 1 3.1300 -0.7217 1.2491 31 1 1.6766 -1.7490 1.2493 32 1 0.9937 0.7578 2.3564 33 1 0.2839 0.2188 4.8996 34 1 1.7373 1.2465 4.9004 35 1 2.9704 -0.5802 6.1057 36 1 3.0022 -0.4385 8.5724 37 1 1.5604 0.2231 9.3816 38 1 1.7006 -2.2939 9.5036 39 1 0.2290 -1.7140 8.6847 40 1 2.7907 -2.7083 7.3485 41 1 1.2090 -3.5289 7.3590 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001460817277.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:56 Heat of formation + Delta-G solvation = -162.907253 kcal Electronic energy + Delta-G solvation = -21505.949394 eV Core-core repulsion = 18191.725474 eV Total energy + Delta-G solvation = -3314.223920 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.25246 -40.31318 -38.10287 -36.66570 -34.97046 -34.17910 -32.78454 -31.11068 -27.54407 -27.47849 -26.93653 -26.80793 -24.43033 -22.13035 -21.43004 -20.58207 -18.83758 -18.03706 -17.65927 -17.54913 -16.97508 -16.63061 -16.33355 -16.13825 -15.71226 -15.63884 -14.83763 -14.65529 -14.47614 -14.27995 -13.97431 -13.82618 -13.27368 -13.07098 -13.00216 -12.63723 -12.61799 -12.40817 -12.22854 -12.13240 -12.09582 -12.06730 -11.46718 -11.26574 -10.99553 -10.84938 -10.68518 -10.65169 -10.38727 -9.91121 -8.01503 -6.17452 1.44491 1.45515 1.52188 1.71402 2.06134 2.46603 2.67530 2.88960 3.21930 3.71650 3.79570 3.80100 3.87481 4.15393 4.25817 4.41775 4.45199 4.47724 4.50780 4.56582 4.72119 4.73908 4.83120 4.86288 5.01950 5.08139 5.12005 5.13636 5.21627 5.38907 5.61611 5.67885 5.69040 5.85295 6.17025 6.17521 6.23277 6.44639 6.68722 6.86784 7.34466 7.50245 8.97169 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.047264 B = 0.003442 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.278317 B = 8131.989884 C = 8407.047837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.051 3.949 3 C -0.121 4.121 4 C -0.532 4.532 5 H 0.044 0.956 6 C 0.029 3.971 7 N -0.899 5.899 8 Si 0.944 3.056 9 H -0.278 1.278 10 H -0.282 1.282 11 H -0.277 1.277 12 C 0.149 3.851 13 N -0.710 5.710 14 C 0.511 3.489 15 O -0.583 6.583 16 C -0.121 4.121 17 C 0.265 3.735 18 O -0.405 6.405 19 C 0.048 3.952 20 C -0.184 4.184 21 C 0.045 3.955 22 O -0.407 6.407 23 H 0.039 0.961 24 H 0.062 0.938 25 H 0.016 0.984 26 H 0.018 0.982 27 H 0.062 0.938 28 H 0.040 0.960 29 H 0.260 0.740 30 H 0.039 0.961 31 H 0.035 0.965 32 H 0.410 0.590 33 H 0.122 0.878 34 H 0.144 0.856 35 H 0.054 0.946 36 H 0.062 0.938 37 H 0.123 0.877 38 H 0.112 0.888 39 H 0.077 0.923 40 H 0.054 0.946 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.431 0.776 20.955 20.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.050 3.950 3 C -0.179 4.179 4 C -0.570 4.570 5 H 0.062 0.938 6 C -0.171 4.171 7 N -0.538 5.538 8 Si 0.771 3.229 9 H -0.203 1.203 10 H -0.208 1.208 11 H -0.202 1.202 12 C 0.025 3.975 13 N -0.362 5.362 14 C 0.298 3.702 15 O -0.463 6.463 16 C -0.160 4.160 17 C 0.170 3.830 18 O -0.326 6.326 19 C -0.028 4.028 20 C -0.222 4.222 21 C -0.031 4.031 22 O -0.328 6.328 23 H 0.057 0.943 24 H 0.081 0.919 25 H 0.035 0.965 26 H 0.037 0.963 27 H 0.081 0.919 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.248 0.752 33 H 0.140 0.860 34 H 0.161 0.839 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.141 0.859 38 H 0.130 0.870 39 H 0.096 0.904 40 H 0.072 0.928 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -0.245 0.304 20.716 20.719 hybrid contribution 0.448 -0.520 -1.036 1.243 sum 0.203 -0.216 19.679 19.681 Atomic orbital electron populations 1.21675 0.97151 0.98587 1.00490 1.18355 0.93230 0.93137 0.90229 1.21671 0.97938 0.97722 1.00535 1.21273 1.31834 1.12225 0.91705 0.93813 1.25445 0.95128 0.95591 1.00938 1.69897 1.36898 1.23287 1.23677 0.85829 0.78653 0.78803 0.79597 1.20333 1.20756 1.20211 1.21247 0.96985 0.94965 0.84278 1.46072 1.52951 1.32060 1.05116 1.20764 0.79906 0.84215 0.85311 1.90671 1.40186 1.28086 1.87400 1.21475 1.05089 1.01222 0.88219 1.22784 0.95122 0.79228 0.85882 1.88026 1.80667 1.48805 1.15119 1.22950 0.99314 0.94230 0.86297 1.22757 1.02945 0.97111 0.99356 1.22867 0.99960 0.95741 0.84556 1.88160 1.72148 1.27415 1.45090 0.94252 0.91881 0.96515 0.96278 0.91927 0.94145 0.92998 0.94295 0.94692 0.75228 0.85973 0.83869 0.92837 0.91977 0.85945 0.86977 0.90395 0.92785 0.87671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.43 8.08 71.98 0.58 -4.84 16 2 C 0.05 2.38 0.50 -52.93 -0.03 2.35 16 3 C -0.12 -5.34 8.08 71.98 0.58 -4.76 16 4 C -0.53 -28.43 8.01 25.60 0.21 -28.22 16 5 H 0.04 2.39 7.74 -2.91 -0.02 2.36 16 6 C 0.03 1.53 5.15 84.65 0.44 1.96 16 7 N -0.90 -48.15 9.35 21.45 0.20 -47.95 16 8 Si 0.94 42.85 29.54 68.60 2.03 44.87 16 9 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 10 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 11 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 12 C 0.15 6.43 4.50 86.38 0.39 6.82 16 13 N -0.71 -24.46 4.96 -463.04 -2.30 -26.76 16 14 C 0.51 17.36 7.71 87.66 0.68 18.04 16 15 O -0.58 -24.73 15.42 10.75 0.17 -24.56 16 16 C -0.12 -2.97 5.78 29.85 0.17 -2.79 16 17 C 0.27 6.98 2.80 71.98 0.20 7.18 16 18 O -0.40 -9.16 10.54 -126.22 -1.33 -10.49 16 19 C 0.05 0.74 6.96 72.07 0.50 1.24 16 20 C -0.18 -2.69 6.35 30.77 0.20 -2.50 16 21 C 0.04 0.94 6.96 72.07 0.50 1.44 16 22 O -0.41 -12.03 9.77 -120.75 -1.18 -13.21 16 23 H 0.04 1.46 6.86 -2.39 -0.02 1.44 16 24 H 0.06 3.13 6.07 -2.39 -0.01 3.12 16 25 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.02 0.82 8.14 -2.39 -0.02 0.81 16 27 H 0.06 3.08 6.07 -2.39 -0.01 3.07 16 28 H 0.04 1.47 6.86 -2.39 -0.02 1.45 16 29 H 0.26 13.46 8.31 -92.71 -0.77 12.69 16 30 H 0.04 1.78 8.14 -2.38 -0.02 1.76 16 31 H 0.03 1.63 8.14 -2.38 -0.02 1.61 16 32 H 0.41 12.05 6.16 -92.71 -0.57 11.47 16 33 H 0.12 2.69 8.14 -2.38 -0.02 2.67 16 34 H 0.14 2.63 8.14 -2.38 -0.02 2.62 16 35 H 0.05 1.49 7.96 -2.39 -0.02 1.48 16 36 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -65.43 325.52 2.44 -62.99 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: 0.44 Total: 19.20 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: 4.41 Total: -4.08 kcal Atomic # 7 Polarization: -72.61 SS G_CDS: -2.10 Total: -74.71 kcal Atomic # 8 Polarization: -45.92 SS G_CDS: -2.34 Total: -48.26 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.87 kcal Total: -65.43 2.44 -62.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460817277.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.922 kcal (2) G-P(sol) polarization free energy of solvation -65.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds