Wall clock time and date at job start Mon Mar 30 2020 01:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47413 * 2 1 4 4 H 1.09005 * 109.47189 * 54.99719 * 3 2 1 5 5 C 1.50694 * 109.47453 * 175.00107 * 3 2 1 6 6 H 1.08001 * 120.00329 * 119.99598 * 5 3 2 7 7 C 1.37879 * 119.99654 * 300.00211 * 5 3 2 8 8 N 1.31508 * 120.00407 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99962 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.47299 * 89.99452 * 9 7 5 11 11 H 1.48495 * 109.47254 * 209.99850 * 9 7 5 12 12 H 1.48505 * 109.47246 * 330.00221 * 9 7 5 13 13 N 1.46506 * 109.47182 * 295.00131 * 3 2 1 14 14 C 1.34773 * 119.99969 * 84.72073 * 13 3 2 15 15 O 1.21281 * 120.00220 * 0.02562 * 14 13 3 16 16 C 1.50706 * 120.00080 * 180.02562 * 14 13 3 17 17 C 1.52999 * 109.54020 * 60.00193 * 16 14 13 18 18 O 1.42901 * 109.47198 * 300.00012 * 17 16 14 19 19 C 1.53182 * 109.54182 * 299.82945 * 16 14 13 20 20 C 1.53289 * 109.05841 * 297.02648 * 19 16 14 21 21 O 1.42899 * 109.45948 * 302.44456 * 20 19 16 22 22 C 1.42905 * 114.09884 * 61.16114 * 21 20 19 23 23 C 1.53089 * 109.41705 * 298.84039 * 22 21 20 24 24 H 1.08996 * 109.47406 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46810 * 300.00543 * 1 2 3 26 26 H 1.09007 * 109.47086 * 59.99509 * 1 2 3 27 27 H 1.08998 * 109.47116 * 239.99782 * 2 1 3 28 28 H 1.08996 * 109.46851 * 119.99791 * 2 1 3 29 29 H 0.97000 * 120.00744 * 180.02562 * 8 7 5 30 30 H 0.97005 * 119.99811 * 265.00126 * 13 3 2 31 31 H 1.08994 * 109.47168 * 60.00023 * 17 16 14 32 32 H 1.09003 * 109.47064 * 180.02562 * 17 16 14 33 33 H 0.96701 * 114.00001 * 179.97438 * 18 17 16 34 34 H 1.08997 * 109.52472 * 57.01208 * 19 16 14 35 35 H 1.08994 * 109.52066 * 177.20678 * 19 16 14 36 36 H 1.09003 * 109.45237 * 182.45011 * 20 19 16 37 37 H 1.08996 * 109.46905 * 62.45321 * 20 19 16 38 38 H 1.09002 * 109.48317 * 178.85289 * 22 21 20 39 39 H 1.09006 * 109.48628 * 58.82589 * 22 21 20 40 40 H 1.08999 * 109.52131 * 297.70609 * 23 22 21 41 41 H 1.08993 * 109.57408 * 177.54176 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8887 -0.6524 7 6 4.1432 0.8783 1.2279 8 7 3.4062 0.3373 2.1733 9 14 6.0050 0.8798 1.3812 10 1 6.4428 2.1128 2.0836 11 1 6.4390 -0.3112 2.1545 12 1 6.6132 0.8394 0.0270 13 7 1.6525 2.0975 -1.2518 14 6 0.4332 2.6595 -1.3689 15 8 -0.3431 2.6234 -0.4378 16 6 0.0342 3.3328 -2.6568 17 6 0.0838 2.3186 -3.8012 18 8 1.4113 1.8044 -3.9248 19 6 0.9983 4.4860 -2.9521 20 6 0.8821 5.5331 -1.8386 21 8 -0.4704 5.9855 -1.7497 22 6 -1.4098 4.9573 -1.4299 23 6 -1.3872 3.8884 -2.5257 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8292 -0.0605 2.9502 30 1 2.2720 2.1231 -1.9978 31 1 -0.6048 1.5002 -3.5914 32 1 -0.2045 2.8068 -4.7322 33 1 1.5168 1.1538 -4.6324 34 1 2.0191 4.1062 -2.9926 35 1 0.7397 4.9412 -3.9080 36 1 1.5337 6.3772 -2.0646 37 1 1.1798 5.0883 -0.8891 38 1 -2.4094 5.3865 -1.3614 39 1 -1.1424 4.5046 -0.4750 40 1 -1.6938 4.3316 -3.4731 41 1 -2.0709 3.0814 -2.2628 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001556106417.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:25 Heat of formation + Delta-G solvation = -145.738880 kcal Electronic energy + Delta-G solvation = -23129.222698 eV Core-core repulsion = 19815.743255 eV Total energy + Delta-G solvation = -3313.479443 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.49601 -37.78642 -36.76313 -35.03482 -33.53479 -32.29299 -31.06755 -30.45124 -27.51733 -26.74476 -23.60223 -23.35631 -22.67878 -21.64129 -19.53169 -18.86895 -17.35391 -16.75854 -16.09019 -15.73805 -15.65265 -15.21892 -14.88982 -14.47344 -14.36620 -13.73754 -13.62742 -13.22708 -12.89009 -12.64256 -12.17218 -12.13304 -12.00337 -11.41028 -11.32581 -11.18644 -11.09969 -10.91918 -10.82012 -10.55222 -10.33073 -10.17867 -10.09785 -9.99923 -9.59493 -9.33488 -8.99557 -8.66279 -8.44196 -7.65600 -6.08408 -4.16987 3.26292 3.33027 3.35036 3.42137 4.05013 4.15051 4.18169 4.40241 4.77943 4.88781 5.08518 5.22628 5.25156 5.34160 5.41377 5.49353 5.56281 5.77204 5.83893 5.90416 5.93448 6.05475 6.19479 6.22565 6.38545 6.41871 6.49378 6.70221 7.08485 7.23964 7.42274 7.42659 7.57253 7.61589 7.68824 7.82987 7.96982 8.23636 8.82109 8.85210 9.28689 9.51358 10.96902 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.021304 B = 0.006302 C = 0.006065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.986102 B = 4441.615639 C = 4615.866967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.125 4.125 3 C 0.269 3.731 4 H 0.046 0.954 5 C -0.530 4.530 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.883 5.883 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.690 5.690 14 C 0.512 3.488 15 O -0.555 6.555 16 C -0.085 4.085 17 C 0.093 3.907 18 O -0.564 6.564 19 C -0.135 4.135 20 C 0.057 3.943 21 O -0.389 6.389 22 C 0.051 3.949 23 C -0.124 4.124 24 H 0.020 0.980 25 H 0.049 0.951 26 H 0.038 0.962 27 H 0.030 0.970 28 H 0.097 0.903 29 H 0.263 0.737 30 H 0.397 0.603 31 H 0.049 0.951 32 H 0.051 0.949 33 H 0.381 0.619 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.093 0.907 37 H 0.057 0.943 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.069 0.931 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.195 4.745 -12.448 14.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.164 4.164 3 C 0.167 3.833 4 H 0.064 0.936 5 C -0.568 4.568 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.521 5.521 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.339 5.339 14 C 0.296 3.704 15 O -0.435 6.435 16 C -0.088 4.088 17 C 0.015 3.985 18 O -0.370 6.370 19 C -0.173 4.173 20 C -0.020 4.020 21 O -0.308 6.308 22 C -0.025 4.025 23 C -0.162 4.162 24 H 0.039 0.961 25 H 0.068 0.932 26 H 0.057 0.943 27 H 0.049 0.951 28 H 0.115 0.885 29 H 0.073 0.927 30 H 0.233 0.767 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.229 0.771 34 H 0.104 0.896 35 H 0.091 0.909 36 H 0.111 0.889 37 H 0.075 0.925 38 H 0.105 0.895 39 H 0.101 0.899 40 H 0.088 0.912 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.633 5.191 -11.113 13.944 hybrid contribution 1.231 -0.846 -0.781 1.686 sum -5.401 4.345 -11.894 13.766 Atomic orbital electron populations 1.21828 0.98497 0.97758 1.01151 1.21903 0.92473 0.99978 1.02080 1.18745 0.94049 0.89164 0.81301 0.93646 1.21243 0.90867 1.38675 1.06061 0.92185 1.24879 0.98459 0.94907 0.95458 1.69894 1.35025 1.37855 1.09325 0.86488 0.85103 0.77593 0.78153 1.20619 1.21129 1.19869 1.46537 1.14464 1.54605 1.18261 1.19922 0.83062 0.79394 0.87994 1.90600 1.51669 1.60659 1.40619 1.21012 0.97384 0.95607 0.94810 1.22059 0.84505 0.95496 0.96464 1.86401 1.28955 1.62659 1.58954 1.22169 1.00263 0.95116 0.99703 1.22626 0.83686 0.97573 0.98078 1.87839 1.16541 1.34775 1.91597 1.22805 0.92742 0.88296 0.98682 1.21899 0.94516 0.99624 1.00141 0.96124 0.93231 0.94334 0.95132 0.88495 0.92667 0.76697 0.93290 0.93113 0.77150 0.89572 0.90864 0.88928 0.92509 0.89462 0.89880 0.91235 0.90193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.03 8.51 37.16 0.32 -2.72 16 2 C -0.13 -3.09 5.45 -26.73 -0.15 -3.23 16 3 C 0.27 6.83 2.24 -69.08 -0.15 6.67 16 4 H 0.05 1.33 7.59 -51.93 -0.39 0.94 16 5 C -0.53 -14.15 8.73 -34.44 -0.30 -14.45 16 6 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.91 11.29 55.43 0.63 -24.28 16 9 Si 0.90 20.81 29.54 -169.99 -5.02 15.78 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 12 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 13 N -0.69 -14.53 4.55 -54.93 -0.25 -14.78 16 14 C 0.51 9.98 3.71 -10.98 -0.04 9.94 16 15 O -0.55 -12.39 10.95 5.56 0.06 -12.33 16 16 C -0.08 -1.25 0.53 -155.47 -0.08 -1.34 16 17 C 0.09 1.13 5.91 37.16 0.22 1.35 16 18 O -0.56 -6.96 10.57 -35.23 -0.37 -7.33 16 19 C -0.13 -1.86 4.68 -26.49 -0.12 -1.99 16 20 C 0.06 0.86 6.62 37.31 0.25 1.11 16 21 O -0.39 -6.17 10.77 -35.23 -0.38 -6.55 16 22 C 0.05 0.77 6.55 37.20 0.24 1.02 16 23 C -0.12 -1.69 4.56 -26.59 -0.12 -1.81 16 24 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.05 1.18 7.84 -51.93 -0.41 0.78 16 26 H 0.04 0.84 5.62 -51.92 -0.29 0.54 16 27 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 29 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 30 H 0.40 7.87 5.91 -40.82 -0.24 7.63 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.38 2.97 9.12 45.56 0.42 3.39 16 34 H 0.09 1.23 7.16 -51.93 -0.37 0.86 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.06 1.01 7.38 -51.93 -0.38 0.63 16 38 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 39 H 0.08 1.51 5.81 -51.93 -0.30 1.21 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.08 1.10 8.02 -51.93 -0.42 0.69 16 LS Contribution 313.36 15.07 4.72 4.72 Total: -1.00 -30.61 313.36 -6.27 -36.89 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: -5.62 Total: 11.63 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: -0.04 Total: -3.76 kcal Atomic # 7 Polarization: -39.44 SS G_CDS: 0.38 Total: -39.06 kcal Atomic # 8 Polarization: -25.52 SS G_CDS: -0.69 Total: -26.21 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.61 -6.27 -36.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001556106417.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.851 kcal (2) G-P(sol) polarization free energy of solvation -30.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds