Wall clock time and date at job start Mon Mar 30 2020 01:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47413 * 2 1 4 4 H 1.09005 * 109.47189 * 54.99719 * 3 2 1 5 5 C 1.50694 * 109.47453 * 175.00107 * 3 2 1 6 6 H 1.08001 * 120.00329 * 119.99598 * 5 3 2 7 7 C 1.37879 * 119.99654 * 300.00211 * 5 3 2 8 8 N 1.31508 * 120.00407 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99962 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.47299 * 89.99452 * 9 7 5 11 11 H 1.48495 * 109.47254 * 209.99850 * 9 7 5 12 12 H 1.48505 * 109.47246 * 330.00221 * 9 7 5 13 13 N 1.46506 * 109.47182 * 295.00131 * 3 2 1 14 14 C 1.34773 * 119.99969 * 84.72073 * 13 3 2 15 15 O 1.21281 * 120.00220 * 0.02562 * 14 13 3 16 16 C 1.50706 * 120.00080 * 180.02562 * 14 13 3 17 17 C 1.52999 * 109.54020 * 60.00193 * 16 14 13 18 18 O 1.42901 * 109.47198 * 300.00012 * 17 16 14 19 19 C 1.53182 * 109.54182 * 299.82945 * 16 14 13 20 20 C 1.53289 * 109.05841 * 297.02648 * 19 16 14 21 21 O 1.42899 * 109.45948 * 302.44456 * 20 19 16 22 22 C 1.42905 * 114.09884 * 61.16114 * 21 20 19 23 23 C 1.53089 * 109.41705 * 298.84039 * 22 21 20 24 24 H 1.08996 * 109.47406 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46810 * 300.00543 * 1 2 3 26 26 H 1.09007 * 109.47086 * 59.99509 * 1 2 3 27 27 H 1.08998 * 109.47116 * 239.99782 * 2 1 3 28 28 H 1.08996 * 109.46851 * 119.99791 * 2 1 3 29 29 H 0.97000 * 120.00744 * 180.02562 * 8 7 5 30 30 H 0.97005 * 119.99811 * 265.00126 * 13 3 2 31 31 H 1.08994 * 109.47168 * 60.00023 * 17 16 14 32 32 H 1.09003 * 109.47064 * 180.02562 * 17 16 14 33 33 H 0.96701 * 114.00001 * 179.97438 * 18 17 16 34 34 H 1.08997 * 109.52472 * 57.01208 * 19 16 14 35 35 H 1.08994 * 109.52066 * 177.20678 * 19 16 14 36 36 H 1.09003 * 109.45237 * 182.45011 * 20 19 16 37 37 H 1.08996 * 109.46905 * 62.45321 * 20 19 16 38 38 H 1.09002 * 109.48317 * 178.85289 * 22 21 20 39 39 H 1.09006 * 109.48628 * 58.82589 * 22 21 20 40 40 H 1.08999 * 109.52131 * 297.70609 * 23 22 21 41 41 H 1.08993 * 109.57408 * 177.54176 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8887 -0.6524 7 6 4.1432 0.8783 1.2279 8 7 3.4062 0.3373 2.1733 9 14 6.0050 0.8798 1.3812 10 1 6.4428 2.1128 2.0836 11 1 6.4390 -0.3112 2.1545 12 1 6.6132 0.8394 0.0270 13 7 1.6525 2.0975 -1.2518 14 6 0.4332 2.6595 -1.3689 15 8 -0.3431 2.6234 -0.4378 16 6 0.0342 3.3328 -2.6568 17 6 0.0838 2.3186 -3.8012 18 8 1.4113 1.8044 -3.9248 19 6 0.9983 4.4860 -2.9521 20 6 0.8821 5.5331 -1.8386 21 8 -0.4704 5.9855 -1.7497 22 6 -1.4098 4.9573 -1.4299 23 6 -1.3872 3.8884 -2.5257 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8292 -0.0605 2.9502 30 1 2.2720 2.1231 -1.9978 31 1 -0.6048 1.5002 -3.5914 32 1 -0.2045 2.8068 -4.7322 33 1 1.5168 1.1538 -4.6324 34 1 2.0191 4.1062 -2.9926 35 1 0.7397 4.9412 -3.9080 36 1 1.5337 6.3772 -2.0646 37 1 1.1798 5.0883 -0.8891 38 1 -2.4094 5.3865 -1.3614 39 1 -1.1424 4.5046 -0.4750 40 1 -1.6938 4.3316 -3.4731 41 1 -2.0709 3.0814 -2.2628 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001556106417.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:24 Heat of formation + Delta-G solvation = -169.420065 kcal Electronic energy + Delta-G solvation = -23130.249591 eV Core-core repulsion = 19815.743255 eV Total energy + Delta-G solvation = -3314.506337 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.83961 -39.25476 -37.78527 -36.87441 -34.73429 -34.21458 -32.71286 -31.85965 -29.09388 -28.23698 -25.29127 -24.57847 -24.11242 -23.05035 -21.39526 -20.46225 -18.52396 -18.25820 -17.46630 -17.21009 -16.96575 -16.87308 -16.27036 -16.14263 -15.61943 -15.17546 -15.07923 -14.64622 -14.32455 -14.06693 -13.76710 -13.50000 -13.27332 -13.26554 -13.07671 -12.83701 -12.70191 -12.48183 -12.23486 -12.15741 -12.02495 -11.67967 -11.56949 -11.41529 -11.04386 -10.93457 -10.61164 -10.51077 -10.14912 -9.45626 -8.15752 -6.32689 1.42959 1.43199 1.54117 1.92595 2.36822 2.71037 2.93628 3.12957 3.19819 3.66437 3.72514 3.98509 4.15213 4.22956 4.29140 4.47095 4.49751 4.51546 4.57197 4.67459 4.69425 4.74615 4.79033 4.82794 4.92999 5.05714 5.08105 5.10077 5.21362 5.26463 5.45531 5.57411 5.70419 5.82932 6.00860 6.19955 6.21549 6.76217 6.95756 7.15269 7.35416 7.73439 8.89411 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.021304 B = 0.006302 C = 0.006065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.986102 B = 4441.615639 C = 4615.866967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.117 4.117 3 C 0.279 3.721 4 H -0.008 1.008 5 C -0.545 4.545 6 H 0.066 0.934 7 C 0.015 3.985 8 N -0.915 5.915 9 Si 0.968 3.032 10 H -0.279 1.279 11 H -0.282 1.282 12 H -0.261 1.261 13 N -0.690 5.690 14 C 0.507 3.493 15 O -0.589 6.589 16 C -0.082 4.082 17 C 0.097 3.903 18 O -0.584 6.584 19 C -0.127 4.127 20 C 0.054 3.946 21 O -0.393 6.393 22 C 0.048 3.952 23 C -0.119 4.119 24 H 0.043 0.957 25 H 0.023 0.977 26 H 0.044 0.956 27 H 0.038 0.962 28 H 0.069 0.931 29 H 0.264 0.736 30 H 0.405 0.595 31 H 0.046 0.954 32 H 0.091 0.909 33 H 0.401 0.599 34 H 0.081 0.919 35 H 0.106 0.894 36 H 0.116 0.884 37 H 0.015 0.985 38 H 0.111 0.889 39 H 0.042 0.958 40 H 0.106 0.894 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.957 5.169 -15.448 17.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.157 4.157 3 C 0.175 3.825 4 H 0.010 0.990 5 C -0.584 4.584 6 H 0.084 0.916 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.792 3.208 10 H -0.205 1.205 11 H -0.208 1.208 12 H -0.185 1.185 13 N -0.339 5.339 14 C 0.293 3.707 15 O -0.471 6.471 16 C -0.086 4.086 17 C 0.019 3.981 18 O -0.393 6.393 19 C -0.165 4.165 20 C -0.023 4.023 21 O -0.312 6.312 22 C -0.029 4.029 23 C -0.157 4.157 24 H 0.062 0.938 25 H 0.043 0.957 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.087 0.913 29 H 0.073 0.927 30 H 0.242 0.758 31 H 0.064 0.936 32 H 0.109 0.891 33 H 0.252 0.748 34 H 0.099 0.901 35 H 0.125 0.875 36 H 0.134 0.866 37 H 0.034 0.966 38 H 0.129 0.871 39 H 0.060 0.940 40 H 0.124 0.876 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.399 5.615 -14.160 16.522 hybrid contribution 1.111 -0.937 0.200 1.467 sum -5.288 4.679 -13.961 15.644 Atomic orbital electron populations 1.21648 0.96921 0.98907 1.00200 1.21736 0.93780 0.99226 1.00911 1.18299 0.93375 0.89163 0.81662 0.99046 1.21561 0.91662 1.38701 1.06446 0.91603 1.25756 1.03228 0.94425 0.95041 1.70047 1.36981 1.38500 1.09815 0.85415 0.79305 0.77462 0.78585 1.20473 1.20801 1.18502 1.46325 1.15555 1.55094 1.16944 1.20864 0.81846 0.78441 0.89523 1.90594 1.52464 1.61548 1.42490 1.21082 0.98240 0.96424 0.92820 1.22053 0.84485 0.94918 0.96626 1.86336 1.29024 1.63575 1.60345 1.22150 0.99766 0.94178 1.00390 1.22696 0.83851 0.98879 0.96841 1.87832 1.16746 1.35156 1.91470 1.22823 0.93600 0.88873 0.97574 1.21908 0.93653 0.99005 1.01089 0.93767 0.95734 0.93656 0.94369 0.91310 0.92665 0.75753 0.93608 0.89135 0.74772 0.90082 0.87520 0.86589 0.96612 0.87096 0.93966 0.87561 0.90527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.47 8.51 71.98 0.61 -4.86 16 2 C -0.12 -5.94 5.45 30.59 0.17 -5.77 16 3 C 0.28 14.71 2.24 44.24 0.10 14.81 16 4 H -0.01 -0.52 7.59 -2.38 -0.02 -0.54 16 5 C -0.55 -29.74 8.73 25.60 0.22 -29.52 16 6 H 0.07 3.42 7.74 -2.91 -0.02 3.40 16 7 C 0.02 0.85 5.29 84.66 0.45 1.29 16 8 N -0.91 -53.28 11.29 21.45 0.24 -53.04 16 9 Si 0.97 42.91 29.54 68.60 2.03 44.93 16 10 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 11 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 12 H -0.26 -10.95 7.11 99.48 0.71 -10.25 16 13 N -0.69 -29.52 4.55 -446.09 -2.03 -31.55 16 14 C 0.51 19.98 3.71 87.66 0.33 20.30 16 15 O -0.59 -27.45 10.95 -3.03 -0.03 -27.48 16 16 C -0.08 -2.28 0.53 -52.81 -0.03 -2.30 16 17 C 0.10 2.02 5.91 71.98 0.43 2.44 16 18 O -0.58 -12.67 10.57 -148.98 -1.57 -14.24 16 19 C -0.13 -3.20 4.68 30.75 0.14 -3.06 16 20 C 0.05 1.59 6.62 72.08 0.48 2.07 16 21 O -0.39 -11.99 10.77 -148.98 -1.60 -13.59 16 22 C 0.05 1.41 6.55 72.01 0.47 1.88 16 23 C -0.12 -2.96 4.56 30.68 0.14 -2.82 16 24 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.02 1.20 7.84 -2.39 -0.02 1.18 16 26 H 0.04 1.98 5.62 -2.38 -0.01 1.97 16 27 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.07 3.88 5.95 -2.39 -0.01 3.87 16 29 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 30 H 0.41 15.94 5.91 -92.70 -0.55 15.39 16 31 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.40 4.92 9.12 -74.06 -0.68 4.24 16 34 H 0.08 2.15 7.16 -2.39 -0.02 2.13 16 35 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.12 2.80 8.14 -2.39 -0.02 2.78 16 37 H 0.02 0.58 7.38 -2.39 -0.02 0.56 16 38 H 0.11 2.68 8.14 -2.39 -0.02 2.66 16 39 H 0.04 1.60 5.81 -2.38 -0.01 1.59 16 40 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.08 1.97 8.02 -2.39 -0.02 1.96 16 Total: -1.00 -69.58 313.36 0.35 -69.23 By element: Atomic # 1 Polarization: 31.46 SS G_CDS: -0.18 Total: 31.28 kcal Atomic # 6 Polarization: -9.03 SS G_CDS: 3.51 Total: -5.53 kcal Atomic # 7 Polarization: -82.81 SS G_CDS: -1.79 Total: -84.60 kcal Atomic # 8 Polarization: -52.10 SS G_CDS: -3.21 Total: -55.32 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.93 kcal Total: -69.58 0.35 -69.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001556106417.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.193 kcal (2) G-P(sol) polarization free energy of solvation -69.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds