Wall clock time and date at job start Mon Mar 30 2020 01:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47292 * 2 1 4 4 C 1.50697 * 109.46901 * 239.99490 * 2 1 3 5 5 H 1.08002 * 120.00193 * 240.00367 * 4 2 1 6 6 C 1.37882 * 119.99634 * 60.00441 * 4 2 1 7 7 N 1.31509 * 120.00351 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 119.99749 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47411 * 59.99811 * 8 6 4 10 10 H 1.48497 * 109.46911 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46922 * 299.99849 * 8 6 4 12 12 C 1.53004 * 109.46910 * 119.99985 * 2 1 3 13 13 N 1.46503 * 109.47113 * 299.99659 * 12 2 1 14 14 C 1.34773 * 119.99885 * 180.02562 * 13 12 2 15 15 O 1.21517 * 120.00172 * 359.97438 * 14 13 12 16 16 O 1.34633 * 120.00010 * 180.02562 * 14 13 12 17 17 C 1.45206 * 117.00282 * 179.97438 * 16 14 13 18 18 C 1.53175 * 109.53928 * 90.44175 * 17 16 14 19 19 C 1.53092 * 109.16179 * 176.85166 * 18 17 16 20 20 O 1.42910 * 109.41107 * 302.39040 * 19 18 17 21 21 C 1.42900 * 114.09727 * 61.16189 * 20 19 18 22 22 C 1.53090 * 109.41229 * 298.83586 * 21 20 19 23 23 H 1.09003 * 109.46535 * 300.00492 * 1 2 3 24 24 H 1.08994 * 109.47087 * 59.99879 * 1 2 3 25 25 H 1.08994 * 109.47419 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47353 * 180.02562 * 3 2 1 27 27 H 1.09005 * 109.47377 * 299.99641 * 3 2 1 28 28 H 1.08998 * 109.47427 * 59.99876 * 3 2 1 29 29 H 0.96993 * 120.00325 * 179.97438 * 7 6 4 30 30 H 1.09004 * 109.47137 * 179.97438 * 12 2 1 31 31 H 1.09001 * 109.46843 * 59.99656 * 12 2 1 32 32 H 0.97002 * 119.99654 * 0.02562 * 13 12 2 33 33 H 1.08997 * 109.61085 * 330.22549 * 17 16 14 34 34 H 1.09006 * 109.52647 * 296.75467 * 18 17 16 35 35 H 1.08998 * 109.52537 * 56.94359 * 18 17 16 36 36 H 1.08998 * 109.48147 * 182.40843 * 19 18 17 37 37 H 1.08997 * 109.48550 * 62.37144 * 19 18 17 38 38 H 1.09003 * 109.47953 * 178.86010 * 21 20 19 39 39 H 1.08995 * 109.49265 * 58.82602 * 21 20 19 40 40 H 1.09001 * 109.52724 * 297.70937 * 22 21 20 41 41 H 1.09000 * 109.52338 * 177.51272 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5887 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3212 -1.1206 -4.0079 9 1 1.8256 -2.5204 -4.0077 10 1 1.8258 -0.4208 -5.2204 11 1 3.8062 -1.1213 -4.0082 12 6 2.0400 -0.7213 1.2493 13 7 1.5517 -0.0306 2.4455 14 6 1.8777 -0.4908 3.6695 15 8 2.5762 -1.4788 3.7811 16 8 1.4285 0.1437 4.7688 17 6 1.8187 -0.4081 6.0541 18 6 3.1289 0.2391 6.5130 19 6 3.4910 -0.2902 7.9031 20 8 2.4217 -0.0136 8.8100 21 6 1.1827 -0.6320 8.4571 22 6 0.7280 -0.1164 7.0893 23 1 -0.3632 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 3.1301 1.4424 -0.0005 27 1 1.6768 1.9563 -0.8900 28 1 1.6768 1.9563 0.8899 29 1 0.7088 1.1612 -3.4844 30 1 3.1300 -0.7217 1.2491 31 1 1.6766 -1.7489 1.2493 32 1 0.9938 0.7579 2.3564 33 1 1.9564 -1.4855 5.9631 34 1 3.9240 -0.0098 5.8100 35 1 3.0052 1.3212 6.5560 36 1 4.4000 0.1990 8.2529 37 1 3.6542 -1.3666 7.8511 38 1 0.4289 -0.3891 9.2061 39 1 1.3155 -1.7129 8.4124 40 1 0.5558 0.9585 7.1440 41 1 -0.1941 -0.6197 6.7984 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001561639477.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:09 Heat of formation + Delta-G solvation = -161.747042 kcal Electronic energy + Delta-G solvation = -21477.669899 eV Core-core repulsion = 18163.496290 eV Total energy + Delta-G solvation = -3314.173609 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.74163 -40.13532 -38.65569 -37.28567 -35.18425 -33.78945 -32.63461 -32.18809 -27.63130 -27.58116 -27.06571 -25.60153 -24.66431 -22.57740 -21.44086 -20.70899 -19.91567 -18.19675 -17.75713 -17.48003 -16.94583 -16.83275 -16.69316 -15.81153 -15.77716 -15.36027 -14.97258 -14.70250 -14.63385 -14.36036 -14.04943 -13.46055 -13.26540 -13.10097 -12.93610 -12.66373 -12.62797 -12.38303 -12.27557 -12.23688 -12.14674 -11.84500 -11.52319 -11.50081 -11.29666 -11.24485 -10.74980 -10.72795 -10.40905 -10.11999 -8.02427 -6.18759 1.14623 1.45866 1.47277 1.53780 1.72859 2.46210 2.86086 3.21428 3.21608 3.59853 3.62212 3.87899 3.94998 4.19923 4.24540 4.41003 4.44669 4.46138 4.60809 4.67410 4.69752 4.74801 4.88184 4.94865 4.99671 5.00779 5.04106 5.08215 5.17566 5.24024 5.43407 5.52236 5.65233 5.67083 6.12254 6.14779 6.18755 6.41048 6.46443 6.85150 7.30025 7.49172 8.96647 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.049031 B = 0.003382 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.930746 B = 8276.616015 C = 8439.337179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.052 3.948 3 C -0.123 4.123 4 C -0.530 4.530 5 H 0.049 0.951 6 C 0.029 3.971 7 N -0.900 5.900 8 Si 0.947 3.053 9 H -0.276 1.276 10 H -0.284 1.284 11 H -0.276 1.276 12 C 0.164 3.836 13 N -0.689 5.689 14 C 0.641 3.359 15 O -0.609 6.609 16 O -0.365 6.365 17 C 0.096 3.904 18 C -0.171 4.171 19 C 0.069 3.931 20 O -0.395 6.395 21 C 0.065 3.935 22 C -0.147 4.147 23 H 0.034 0.966 24 H 0.064 0.936 25 H 0.021 0.979 26 H 0.021 0.979 27 H 0.064 0.936 28 H 0.034 0.966 29 H 0.261 0.739 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.412 0.588 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.082 0.918 36 H 0.117 0.883 37 H 0.061 0.939 38 H 0.127 0.873 39 H 0.063 0.937 40 H 0.085 0.915 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.458 0.218 19.095 19.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.052 3.948 3 C -0.180 4.180 4 C -0.569 4.569 5 H 0.067 0.933 6 C -0.171 4.171 7 N -0.538 5.538 8 Si 0.774 3.226 9 H -0.202 1.202 10 H -0.210 1.210 11 H -0.202 1.202 12 C 0.041 3.959 13 N -0.348 5.348 14 C 0.394 3.606 15 O -0.502 6.502 16 O -0.279 6.279 17 C 0.040 3.960 18 C -0.209 4.209 19 C -0.007 4.007 20 O -0.313 6.313 21 C -0.012 4.012 22 C -0.185 4.185 23 H 0.053 0.947 24 H 0.083 0.917 25 H 0.040 0.960 26 H 0.040 0.960 27 H 0.083 0.917 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.250 0.750 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.100 0.900 36 H 0.135 0.865 37 H 0.079 0.921 38 H 0.145 0.855 39 H 0.082 0.918 40 H 0.104 0.896 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.186 -0.025 19.232 19.233 hybrid contribution 0.181 -0.365 -1.624 1.674 sum -0.005 -0.390 17.608 17.612 Atomic orbital electron populations 1.21694 0.97068 0.98883 1.00399 1.18378 0.93358 0.93086 0.90021 1.21693 0.98119 0.97844 1.00382 1.21218 1.31999 1.12372 0.91275 0.93257 1.25462 0.95066 0.95561 1.01031 1.69899 1.36845 1.23299 1.23759 0.85786 0.78647 0.78800 0.79394 1.20151 1.20968 1.20162 1.21419 0.97428 0.95043 0.81963 1.44962 1.54529 1.33117 1.02222 1.18309 0.78779 0.81193 0.82287 1.90920 1.43397 1.28979 1.86866 1.86323 1.71154 1.55815 1.14634 1.22936 0.96185 0.98548 0.78295 1.22642 0.96829 1.02361 0.99081 1.22616 0.90828 1.00567 0.86732 1.87927 1.19637 1.73983 1.49788 1.22764 0.86383 0.97214 0.94825 1.22374 0.97938 1.04307 0.93892 0.94711 0.91736 0.95967 0.96008 0.91743 0.94734 0.92971 0.93472 0.93430 0.75021 0.90582 0.91382 0.89966 0.86464 0.92103 0.85508 0.91841 0.89636 0.88859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.43 8.08 71.98 0.58 -4.85 16 2 C 0.05 2.39 0.50 -52.93 -0.03 2.37 16 3 C -0.12 -5.44 8.08 71.98 0.58 -4.86 16 4 C -0.53 -27.56 8.01 25.60 0.21 -27.36 16 5 H 0.05 2.58 7.74 -2.91 -0.02 2.56 16 6 C 0.03 1.50 5.15 84.66 0.44 1.93 16 7 N -0.90 -47.59 9.35 21.45 0.20 -47.39 16 8 Si 0.95 42.00 29.54 68.60 2.03 44.02 16 9 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 10 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 11 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 12 C 0.16 6.89 4.50 86.38 0.39 7.28 16 13 N -0.69 -25.02 4.96 -590.84 -2.93 -27.95 16 14 C 0.64 23.38 8.73 129.79 1.13 24.51 16 15 O -0.61 -25.48 15.60 19.79 0.31 -25.17 16 16 O -0.37 -11.12 9.94 -55.43 -0.55 -11.67 16 17 C 0.10 2.35 2.55 30.71 0.08 2.43 16 18 C -0.17 -3.76 5.78 30.68 0.18 -3.59 16 19 C 0.07 1.20 6.84 72.01 0.49 1.69 16 20 O -0.39 -7.30 10.77 -148.98 -1.60 -8.90 16 21 C 0.06 0.92 6.84 72.01 0.49 1.42 16 22 C -0.15 -2.60 5.80 30.68 0.18 -2.42 16 23 H 0.03 1.31 6.86 -2.39 -0.02 1.29 16 24 H 0.06 3.17 6.07 -2.39 -0.01 3.16 16 25 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.06 3.18 6.07 -2.38 -0.01 3.16 16 28 H 0.03 1.30 6.86 -2.39 -0.02 1.29 16 29 H 0.26 13.33 8.31 -92.71 -0.77 12.56 16 30 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 31 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.41 13.57 6.27 -92.71 -0.58 12.99 16 33 H 0.08 2.06 7.16 -2.39 -0.02 2.04 16 34 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 35 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.13 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -59.62 325.40 2.60 -57.02 By element: Atomic # 1 Polarization: 21.05 SS G_CDS: 0.43 Total: 21.48 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: 4.72 Total: -1.44 kcal Atomic # 7 Polarization: -72.61 SS G_CDS: -2.73 Total: -75.34 kcal Atomic # 8 Polarization: -43.89 SS G_CDS: -1.85 Total: -45.74 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.02 kcal Total: -59.62 2.60 -57.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001561639477.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.730 kcal (2) G-P(sol) polarization free energy of solvation -59.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds