Wall clock time and date at job start Mon Mar 30 2020 01:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47385 * 2 1 4 4 C 1.50705 * 109.46884 * 240.00354 * 2 1 3 5 5 H 1.08007 * 119.99923 * 237.01204 * 4 2 1 6 6 C 1.37873 * 120.00314 * 57.00828 * 4 2 1 7 7 N 1.31516 * 119.99842 * 5.54263 * 6 4 2 8 8 Si 1.86801 * 120.00085 * 185.54425 * 6 4 2 9 9 H 1.48493 * 109.47304 * 84.99960 * 8 6 4 10 10 H 1.48497 * 109.47147 * 205.00111 * 8 6 4 11 11 H 1.48498 * 109.47049 * 324.99736 * 8 6 4 12 12 C 1.53002 * 109.47160 * 120.00647 * 2 1 3 13 13 N 1.46505 * 109.46528 * 299.99637 * 12 2 1 14 14 C 1.34778 * 119.99495 * 179.97438 * 13 12 2 15 15 O 1.21283 * 120.00169 * 0.02562 * 14 13 12 16 16 C 1.50699 * 119.99633 * 180.02562 * 14 13 12 17 17 O 1.42906 * 109.47072 * 179.97438 * 16 14 13 18 18 C 1.42894 * 114.00180 * 179.97438 * 17 16 14 19 19 H 1.09008 * 110.43923 * 328.91380 * 18 17 16 20 20 C 1.54807 * 110.49096 * 206.22412 * 18 17 16 21 21 C 1.54990 * 102.09358 * 220.44688 * 20 18 17 22 22 O 1.44383 * 103.49295 * 37.02004 * 21 20 18 23 23 C 1.43736 * 106.97397 * 319.94209 * 22 21 20 24 24 H 1.08997 * 109.47050 * 293.93791 * 1 2 3 25 25 H 1.09009 * 109.46566 * 53.92824 * 1 2 3 26 26 H 1.08990 * 109.47470 * 173.92856 * 1 2 3 27 27 H 1.09005 * 109.47270 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47789 * 299.99999 * 3 2 1 29 29 H 1.09004 * 109.47094 * 60.00572 * 3 2 1 30 30 H 0.97000 * 120.00005 * 180.02562 * 7 6 4 31 31 H 1.08989 * 109.47052 * 179.97438 * 12 2 1 32 32 H 1.09000 * 109.47208 * 59.99235 * 12 2 1 33 33 H 0.96996 * 120.00240 * 359.97438 * 13 12 2 34 34 H 1.09003 * 109.47298 * 60.00541 * 16 14 13 35 35 H 1.09000 * 109.46970 * 299.99789 * 16 14 13 36 36 H 1.09003 * 110.90598 * 338.64384 * 20 18 17 37 37 H 1.08997 * 110.91016 * 102.24307 * 20 18 17 38 38 H 1.09004 * 110.61742 * 278.51913 * 21 20 18 39 39 H 1.08999 * 110.62025 * 155.52409 * 21 20 18 40 40 H 1.09001 * 109.87894 * 267.08590 * 23 22 21 41 41 H 1.08997 * 110.00355 * 146.00596 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6925 -1.5595 -1.1323 6 6 1.6491 -0.2764 -2.4818 7 7 0.9351 0.8210 -2.6071 8 14 2.1440 -1.2470 -3.9992 9 1 1.1618 -2.3359 -4.2324 10 1 2.1708 -0.3438 -5.1776 11 1 3.4931 -1.8327 -3.7939 12 6 2.0400 -0.7214 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8769 -0.4916 3.6694 15 8 2.5741 -1.4778 3.7807 16 6 1.3741 0.2184 4.8999 17 8 1.8495 -0.4559 6.0667 18 6 1.4279 0.1403 7.2950 19 1 1.3129 1.2177 7.1754 20 6 2.4361 -0.1777 8.4259 21 6 1.4984 -0.4559 9.6281 22 8 0.3783 -1.1429 9.0298 23 6 0.1080 -0.4928 7.7767 24 1 -0.3633 0.4170 0.9392 25 1 -0.3633 0.6052 -0.8307 26 1 -0.3634 -1.0218 -0.1087 27 1 3.1301 1.4424 0.0005 28 1 1.6768 1.9564 -0.8899 29 1 1.6768 1.9563 0.8901 30 1 0.6652 1.1262 -3.4874 31 1 3.1299 -0.7218 1.2489 32 1 1.6766 -1.7490 1.2491 33 1 0.9944 0.7581 2.3564 34 1 0.2841 0.2184 4.8996 35 1 1.7375 1.2461 4.9003 36 1 3.0284 -1.0597 8.1823 37 1 3.0802 0.6788 8.6250 38 1 1.1750 0.4784 10.0870 39 1 1.9927 -1.0936 10.3610 40 1 -0.6456 0.2823 7.9162 41 1 -0.2415 -1.2221 7.0460 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001583480621.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:07 Heat of formation + Delta-G solvation = -153.637163 kcal Electronic energy + Delta-G solvation = -21060.171406 eV Core-core repulsion = 17746.349467 eV Total energy + Delta-G solvation = -3313.821939 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.01199 -40.35923 -38.37445 -37.67977 -35.01921 -32.88577 -32.37956 -29.98375 -29.00222 -27.55582 -27.36526 -26.13751 -23.69050 -22.30196 -21.72386 -20.62045 -18.59674 -18.34460 -17.74393 -17.39548 -17.02348 -16.70929 -16.51165 -16.26421 -15.69902 -15.36967 -15.01708 -14.75525 -14.34586 -14.02937 -13.86040 -13.53474 -13.24541 -13.14648 -13.05869 -12.76403 -12.64616 -12.61119 -12.37408 -12.23432 -12.14466 -11.70182 -11.48030 -11.28062 -10.95000 -10.83699 -10.68442 -10.46313 -10.39348 -9.97116 -8.03871 -6.18021 1.42261 1.45099 1.52340 1.62794 1.87848 2.45637 2.92218 3.04263 3.20323 3.51018 3.79847 3.89163 4.04434 4.19399 4.22657 4.30387 4.39087 4.42969 4.51172 4.58067 4.72271 4.75105 4.81481 4.91524 4.99750 5.05964 5.06267 5.10943 5.19715 5.35168 5.57388 5.67605 5.68529 5.82886 6.10738 6.15102 6.21612 6.43033 6.66523 6.85806 7.30482 7.49360 8.95565 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.052133 B = 0.003044 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.954550 B = 9195.281546 C = 9309.950959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.052 3.948 3 C -0.121 4.121 4 C -0.533 4.533 5 H 0.042 0.958 6 C 0.031 3.969 7 N -0.897 5.897 8 Si 0.943 3.057 9 H -0.279 1.279 10 H -0.282 1.282 11 H -0.277 1.277 12 C 0.148 3.852 13 N -0.706 5.706 14 C 0.500 3.500 15 O -0.585 6.585 16 C 0.048 3.952 17 O -0.383 6.383 18 C 0.048 3.952 19 H 0.114 0.886 20 C -0.154 4.154 21 C 0.045 3.955 22 O -0.405 6.405 23 C 0.020 3.980 24 H 0.042 0.958 25 H 0.060 0.940 26 H 0.016 0.984 27 H 0.017 0.983 28 H 0.062 0.938 29 H 0.041 0.959 30 H 0.261 0.739 31 H 0.037 0.963 32 H 0.036 0.964 33 H 0.413 0.587 34 H 0.110 0.890 35 H 0.117 0.883 36 H 0.067 0.933 37 H 0.112 0.888 38 H 0.088 0.912 39 H 0.104 0.896 40 H 0.091 0.909 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.592 6.123 20.199 21.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.051 3.949 3 C -0.179 4.179 4 C -0.571 4.571 5 H 0.061 0.939 6 C -0.169 4.169 7 N -0.536 5.536 8 Si 0.770 3.230 9 H -0.205 1.205 10 H -0.208 1.208 11 H -0.202 1.202 12 C 0.025 3.975 13 N -0.359 5.359 14 C 0.287 3.713 15 O -0.465 6.465 16 C -0.031 4.031 17 O -0.302 6.302 18 C -0.010 4.010 19 H 0.132 0.868 20 C -0.191 4.191 21 C -0.030 4.030 22 O -0.325 6.325 23 C -0.057 4.057 24 H 0.061 0.939 25 H 0.079 0.921 26 H 0.035 0.965 27 H 0.036 0.964 28 H 0.081 0.919 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.250 0.750 34 H 0.128 0.872 35 H 0.134 0.866 36 H 0.086 0.914 37 H 0.130 0.870 38 H 0.106 0.894 39 H 0.123 0.877 40 H 0.109 0.891 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.183 5.203 20.204 20.977 hybrid contribution 0.123 -0.203 -1.460 1.479 sum -2.060 5.000 18.745 19.509 Atomic orbital electron populations 1.21660 0.96893 0.99213 0.99975 1.18355 0.93359 0.93111 0.90053 1.21695 0.97929 0.97667 1.00592 1.21278 1.29614 1.14459 0.91780 0.93947 1.25417 0.95174 0.95544 1.00804 1.69915 1.38104 1.21870 1.23693 0.85813 0.78490 0.78873 0.79869 1.20470 1.20762 1.20248 1.21259 0.96976 0.95100 0.84202 1.45994 1.52996 1.32120 1.04812 1.21073 0.80172 0.84498 0.85578 1.90686 1.39884 1.28558 1.87420 1.22408 1.01072 0.96707 0.82944 1.88097 1.74432 1.54378 1.13248 1.23886 0.93996 0.98845 0.84236 0.86845 1.23265 0.98411 1.04043 0.93426 1.23756 0.85446 0.98495 0.95342 1.88867 1.52066 1.57281 1.34251 1.23859 0.97479 0.98092 0.86249 0.93872 0.92077 0.96451 0.96405 0.91868 0.93997 0.92991 0.94493 0.94525 0.74953 0.87200 0.86563 0.91402 0.86957 0.89411 0.87750 0.89109 0.90598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.15 8.03 71.98 0.58 -4.57 16 2 C 0.05 2.35 0.50 -52.93 -0.03 2.32 16 3 C -0.12 -5.19 8.11 71.98 0.58 -4.61 16 4 C -0.53 -28.15 8.01 25.60 0.20 -27.94 16 5 H 0.04 2.31 7.75 -2.91 -0.02 2.28 16 6 C 0.03 1.61 5.13 84.65 0.43 2.05 16 7 N -0.90 -47.31 9.45 21.45 0.20 -47.11 16 8 Si 0.94 42.55 29.54 68.60 2.03 44.58 16 9 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 10 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 11 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 12 C 0.15 6.27 4.50 86.38 0.39 6.66 16 13 N -0.71 -23.13 4.90 -463.05 -2.27 -25.40 16 14 C 0.50 16.65 7.91 87.66 0.69 17.34 16 15 O -0.59 -26.05 16.50 16.00 0.26 -25.78 16 16 C 0.05 1.02 6.28 71.24 0.45 1.47 16 17 O -0.38 -9.90 9.49 -129.94 -1.23 -11.13 16 18 C 0.05 0.81 3.51 31.58 0.11 0.92 16 19 H 0.11 1.11 7.86 -2.38 -0.02 1.09 16 20 C -0.15 -2.37 6.90 31.89 0.22 -2.15 16 21 C 0.05 0.63 7.72 72.66 0.56 1.19 16 22 O -0.40 -8.71 11.52 -148.98 -1.72 -10.43 16 23 C 0.02 0.36 7.52 72.36 0.54 0.90 16 24 H 0.04 1.49 6.71 -2.39 -0.02 1.48 16 25 H 0.06 2.91 6.25 -2.38 -0.01 2.89 16 26 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 28 H 0.06 3.04 6.10 -2.39 -0.01 3.02 16 29 H 0.04 1.45 6.86 -2.38 -0.02 1.43 16 30 H 0.26 13.24 8.31 -92.71 -0.77 12.47 16 31 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.41 10.95 6.16 -92.71 -0.57 10.38 16 34 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.12 1.65 8.10 -2.39 -0.02 1.63 16 36 H 0.07 1.40 8.09 -2.39 -0.02 1.38 16 37 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 39 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.08 1.60 7.97 -2.39 -0.02 1.58 16 Total: -1.00 -69.26 330.28 2.46 -66.80 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: 0.44 Total: 14.90 kcal Atomic # 6 Polarization: -11.16 SS G_CDS: 4.74 Total: -6.42 kcal Atomic # 7 Polarization: -70.44 SS G_CDS: -2.07 Total: -72.51 kcal Atomic # 8 Polarization: -44.66 SS G_CDS: -2.69 Total: -47.35 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -69.26 2.46 -66.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001583480621.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.832 kcal (2) G-P(sol) polarization free energy of solvation -69.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds