Wall clock time and date at job start Mon Mar 30 2020 00:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 110.43625 * 2 1 4 4 C 1.54095 * 110.49079 * 122.54221 * 2 1 3 5 5 O 1.43741 * 107.29452 * 120.70527 * 4 2 1 6 6 C 1.44377 * 106.97593 * 333.49074 * 5 4 2 7 7 H 1.08997 * 110.61612 * 281.39788 * 6 5 4 8 8 C 1.52999 * 110.61940 * 158.55968 * 6 5 4 9 9 N 1.46503 * 109.47170 * 66.45586 * 8 6 5 10 10 C 1.36937 * 119.99885 * 273.79840 * 9 8 6 11 11 H 1.08002 * 120.00090 * 146.21431 * 10 9 8 12 12 C 1.38818 * 119.99958 * 326.22153 * 10 9 8 13 13 N 1.31621 * 119.99931 * 335.35424 * 12 10 9 14 14 Si 1.86800 * 119.99881 * 155.35576 * 12 10 9 15 15 H 1.48497 * 109.47194 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47280 * 120.00217 * 14 12 10 17 17 H 1.48509 * 109.46861 * 239.99765 * 14 12 10 18 18 C 1.46500 * 120.00394 * 93.80242 * 9 8 6 19 19 C 1.53006 * 109.46667 * 269.99968 * 18 9 8 20 20 C 1.50705 * 109.46771 * 179.97438 * 19 18 9 21 21 O 1.20833 * 120.00083 * 0.02562 * 20 19 18 22 22 O 1.34224 * 119.99655 * 180.02562 * 20 19 18 23 23 C 1.54813 * 110.48931 * 237.30984 * 2 1 3 24 24 H 1.09002 * 109.47098 * 298.90703 * 1 2 3 25 25 H 1.08998 * 109.47055 * 58.91087 * 1 2 3 26 26 H 1.09005 * 109.47228 * 178.91264 * 1 2 3 27 27 H 1.08998 * 109.46909 * 181.09591 * 3 2 1 28 28 H 1.09004 * 109.46689 * 301.08901 * 3 2 1 29 29 H 1.08995 * 109.47259 * 61.08882 * 3 2 1 30 30 H 1.09003 * 109.88059 * 1.28602 * 4 2 1 31 31 H 1.08997 * 109.88293 * 240.12960 * 4 2 1 32 32 H 1.08995 * 109.47091 * 306.45311 * 8 6 5 33 33 H 1.09006 * 109.47527 * 186.45007 * 8 6 5 34 34 H 0.96995 * 119.99568 * 180.02562 * 13 12 10 35 35 H 1.08994 * 109.47424 * 149.99886 * 18 9 8 36 36 H 1.09000 * 109.47104 * 29.99507 * 18 9 8 37 37 H 1.09000 * 109.46983 * 299.99614 * 19 18 9 38 38 H 1.08994 * 109.46954 * 60.00269 * 19 18 9 39 39 H 0.96704 * 117.00087 * 180.02562 * 22 20 19 40 40 H 1.09004 * 110.90876 * 144.00179 * 23 2 1 41 41 H 1.09004 * 110.90447 * 20.40503 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0642 1.4338 0.0000 4 6 2.0694 -0.7765 1.2168 5 8 2.8754 -1.8546 0.7127 6 6 2.3781 -2.1723 -0.6050 7 1 1.4715 -2.7736 -0.5383 8 6 3.4465 -2.9004 -1.4230 9 7 3.7072 -4.2132 -0.8275 10 6 4.6200 -4.3363 0.1859 11 1 4.4642 -5.0653 0.9674 12 6 5.7455 -3.5241 0.2087 13 7 6.2051 -3.0048 -0.9100 14 14 6.6077 -3.1681 1.8271 15 1 5.8983 -3.8652 2.9298 16 1 8.0104 -3.6507 1.7573 17 1 6.5997 -1.7049 2.0809 18 6 2.9915 -5.3945 -1.3160 19 6 1.6985 -5.5736 -0.5178 20 6 0.9619 -6.7883 -1.0207 21 8 1.4239 -7.4438 -1.9246 22 8 -0.2074 -7.1421 -0.4647 23 6 2.0719 -0.7832 -1.2205 24 1 -0.3633 0.4968 0.8996 25 1 -0.3633 0.5306 -0.8800 26 1 -0.3634 -1.0275 -0.0195 27 1 3.1539 1.4154 -0.0197 28 1 1.6938 1.9595 -0.8801 29 1 1.7256 1.9477 0.8995 30 1 1.2392 -1.1756 1.7996 31 1 2.6774 -0.1178 1.8370 32 1 4.3650 -2.3135 -1.4252 33 1 3.0952 -3.0292 -2.4468 34 1 6.9917 -2.4376 -0.8941 35 1 3.6196 -6.2766 -1.1930 36 1 2.7518 -5.2634 -2.3712 37 1 1.9382 -5.7047 0.5375 38 1 1.0703 -4.6914 -0.6409 39 1 -0.6427 -7.9288 -0.8206 40 1 2.9797 -0.3206 -1.6077 41 1 1.3140 -0.8617 -2.0000 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001593954108.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:18 Heat of formation + Delta-G solvation = -149.140936 kcal Electronic energy + Delta-G solvation = -22302.989558 eV Core-core repulsion = 18989.362590 eV Total energy + Delta-G solvation = -3313.626968 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.18428 -40.64617 -37.74082 -36.97702 -35.22762 -33.88903 -32.35579 -30.73184 -28.19868 -27.28390 -26.72712 -26.16681 -23.51355 -21.79623 -21.53376 -20.14803 -19.11912 -18.65112 -17.50961 -17.09140 -16.87103 -16.51079 -16.27262 -15.73769 -15.41039 -15.10402 -14.63712 -14.33718 -14.30489 -14.10907 -13.97657 -13.72572 -13.15581 -13.05070 -12.74557 -12.60705 -12.50282 -12.48301 -12.35192 -12.23241 -11.97352 -11.93288 -11.76989 -11.58423 -11.50113 -11.30504 -11.19208 -10.45241 -10.22804 -8.58427 -7.76192 -5.32072 1.26790 1.45567 1.50585 1.58632 2.19228 2.60113 3.23505 3.34464 3.63650 3.72552 3.93625 4.03264 4.11785 4.19913 4.39246 4.40754 4.45905 4.64742 4.75367 4.76970 4.81792 4.81908 4.85094 4.89609 5.00513 5.05696 5.08379 5.11327 5.18882 5.27746 5.33417 5.33982 5.51173 5.65788 5.73852 5.87058 6.36683 6.56971 7.07222 7.23051 7.91513 8.39254 9.20938 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.011556 B = 0.008346 C = 0.005524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2422.298245 B = 3354.105917 C = 5067.827792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.096 4.096 3 C -0.131 4.131 4 C 0.040 3.960 5 O -0.378 6.378 6 C 0.071 3.929 7 H 0.058 0.942 8 C 0.141 3.859 9 N -0.589 5.589 10 C -0.245 4.245 11 H 0.052 0.948 12 C -0.021 4.021 13 N -0.915 5.915 14 Si 0.946 3.054 15 H -0.273 1.273 16 H -0.296 1.296 17 H -0.295 1.295 18 C 0.160 3.840 19 C -0.122 4.122 20 C 0.493 3.507 21 O -0.552 6.552 22 O -0.512 6.512 23 C -0.137 4.137 24 H 0.067 0.933 25 H 0.071 0.929 26 H 0.053 0.947 27 H 0.038 0.962 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.049 0.951 34 H 0.248 0.752 35 H 0.037 0.963 36 H 0.046 0.954 37 H 0.099 0.901 38 H 0.109 0.891 39 H 0.425 0.575 40 H 0.060 0.940 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.087 4.597 1.031 15.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.096 4.096 3 C -0.189 4.189 4 C -0.037 4.037 5 O -0.298 6.298 6 C 0.011 3.989 7 H 0.076 0.924 8 C 0.015 3.985 9 N -0.308 5.308 10 C -0.375 4.375 11 H 0.069 0.931 12 C -0.218 4.218 13 N -0.560 5.560 14 Si 0.776 3.224 15 H -0.198 1.198 16 H -0.224 1.224 17 H -0.222 1.222 18 C 0.033 3.967 19 C -0.162 4.162 20 C 0.337 3.663 21 O -0.443 6.443 22 O -0.326 6.326 23 C -0.175 4.175 24 H 0.086 0.914 25 H 0.090 0.910 26 H 0.072 0.928 27 H 0.057 0.943 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.067 0.933 34 H 0.057 0.943 35 H 0.055 0.945 36 H 0.064 0.936 37 H 0.117 0.883 38 H 0.127 0.873 39 H 0.286 0.714 40 H 0.078 0.922 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -14.446 4.734 1.025 15.237 hybrid contribution 0.473 -0.288 0.496 0.743 sum -13.973 4.446 1.521 14.742 Atomic orbital electron populations 1.21801 0.91789 1.02078 1.02929 1.21931 0.97474 0.96253 0.93955 1.21796 1.00010 0.94201 1.02845 1.23460 0.94756 0.89172 0.96355 1.89141 1.56263 1.52176 1.32179 1.23859 0.96607 0.95139 0.83278 0.92445 1.21104 0.98065 0.86908 0.92409 1.43898 1.44105 1.01947 1.40863 1.19000 0.98878 1.19619 0.99978 0.93069 1.25403 0.96573 1.01749 0.98074 1.70098 1.23460 1.36531 1.25937 0.85557 0.77431 0.77275 0.82146 1.19755 1.22357 1.22165 1.20616 0.90788 0.90221 0.95056 1.22066 0.97560 0.93360 1.03188 1.23685 0.78597 0.85394 0.78642 1.90689 1.67983 1.54778 1.30876 1.84539 1.35074 1.50425 1.62553 1.23246 1.01203 0.95001 0.98039 0.91378 0.91046 0.92812 0.94256 0.91089 0.91292 0.92302 0.91323 0.90972 0.93318 0.94307 0.94463 0.93586 0.88296 0.87337 0.71400 0.92162 0.88840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.51 8.25 71.98 0.59 -1.91 16 2 C -0.10 -2.47 0.99 -51.19 -0.05 -2.52 16 3 C -0.13 -2.99 8.27 71.98 0.60 -2.40 16 4 C 0.04 1.28 7.04 72.35 0.51 1.78 16 5 O -0.38 -16.27 10.67 -148.98 -1.59 -17.86 16 6 C 0.07 2.66 3.59 31.27 0.11 2.78 16 7 H 0.06 2.02 6.49 -2.39 -0.02 2.00 16 8 C 0.14 6.42 5.16 86.38 0.45 6.87 16 9 N -0.59 -28.70 2.46 -701.99 -1.72 -30.42 16 10 C -0.24 -13.43 8.91 84.03 0.75 -12.68 16 11 H 0.05 2.84 7.94 -2.91 -0.02 2.82 16 12 C -0.02 -1.19 4.94 84.86 0.42 -0.77 16 13 N -0.92 -53.95 11.37 21.65 0.25 -53.71 16 14 Si 0.95 46.86 29.62 68.60 2.03 48.89 16 15 H -0.27 -13.13 7.11 99.48 0.71 -12.43 16 16 H -0.30 -14.53 7.11 99.48 0.71 -13.83 16 17 H -0.29 -14.74 7.11 99.48 0.71 -14.03 16 18 C 0.16 6.72 5.00 86.38 0.43 7.15 16 19 C -0.12 -4.07 6.14 29.85 0.18 -3.88 16 20 C 0.49 14.99 8.33 71.24 0.59 15.59 16 21 O -0.55 -20.20 16.74 21.94 0.37 -19.84 16 22 O -0.51 -11.50 13.42 -51.36 -0.69 -12.19 16 23 C -0.14 -4.12 5.70 31.89 0.18 -3.94 16 24 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.05 1.08 8.14 -2.38 -0.02 1.07 16 27 H 0.04 1.05 8.13 -2.39 -0.02 1.03 16 28 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 29 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.06 1.70 7.69 -2.39 -0.02 1.68 16 31 H 0.07 2.18 7.69 -2.39 -0.02 2.16 16 32 H 0.07 3.90 5.36 -2.39 -0.01 3.88 16 33 H 0.05 2.04 7.85 -2.38 -0.02 2.02 16 34 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 35 H 0.04 1.70 8.00 -2.39 -0.02 1.68 16 36 H 0.05 1.88 7.82 -2.39 -0.02 1.87 16 37 H 0.10 3.43 8.14 -2.39 -0.02 3.41 16 38 H 0.11 3.32 6.49 -2.39 -0.02 3.31 16 39 H 0.42 5.38 9.10 -74.05 -0.67 4.71 16 40 H 0.06 2.01 7.79 -2.38 -0.02 2.00 16 41 H 0.09 2.33 7.86 -2.38 -0.02 2.31 16 Total: -1.00 -68.77 333.29 3.75 -65.02 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: 0.34 Total: 14.04 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: 4.76 Total: 6.06 kcal Atomic # 7 Polarization: -82.65 SS G_CDS: -1.48 Total: -84.13 kcal Atomic # 8 Polarization: -47.97 SS G_CDS: -1.91 Total: -49.88 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.89 kcal Total: -68.77 3.75 -65.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593954108.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.120 kcal (2) G-P(sol) polarization free energy of solvation -68.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds